genome.fa.s645.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  5  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1055662--1055704	13	2.9	16	76	20	56	62	0	2	34	1.08
1055668--1055716	16	3.3	15	81	18	50	59	0	0	40	0.98
1056844--1056979	71	1.9	71	87	0	200	20	33	13	32	1.92
1057361--1057387	5	5.4	5	100	0	54	18	0	0	81	0.69
1074998--1075042	22	2.0	22	100	0	90	13	11	40	35	1.80
1075141--1075184	21	2.1	21	100	0	88	29	34	9	27	1.87
1079493--1079526	3	11.3	3	100	0	68	67	0	0	32	0.91
1079967--1079997	2	15.5	2	93	0	53	51	0	0	48	1.00
1083166--1083191	12	2.2	12	100	0	52	42	15	26	15	1.87
1087105--1087170	30	2.2	29	86	2	87	62	4	1	31	1.25
1091042--1091126	28	3.0	29	75	13	95	42	0	0	57	0.98
1091020--1091119	28	3.6	25	68	22	67	41	1	1	57	1.12
1093780--1093817	20	1.9	20	88	0	58	26	2	0	71	1.00
1096034--1096097	27	2.4	27	83	0	74	42	4	42	10	1.61
1096085--1096134	15	3.3	15	85	0	64	42	4	40	14	1.64
1097190--1097326	62	2.2	64	82	12	169	43	5	3	47	1.43
1098416--1098446	2	15.5	2	100	0	62	48	0	51	0	1.00
1101979--1102044	24	2.7	24	75	11	64	39	0	0	60	0.97
1101997--1102068	37	1.9	38	83	8	94	41	0	0	58	0.98
1102045--1102105	18	3.7	16	71	14	52	50	0	3	45	1.17
1102108--1102157	19	2.6	19	83	3	55	48	6	0	46	1.27
1102621--1102677	27	2.1	27	87	6	80	31	3	0	64	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1102966--1103001	18	2.1	17	89	5	54	30	0	2	66	1.06
1103146--1103255	27	4.0	27	72	18	84	50	0	0	49	1.07
1103197--1103256	20	3.2	19	79	11	70	53	0	0	46	1.00
1103230--1103274	23	2.0	23	86	0	63	60	0	2	37	1.09
1106292--1106321	3	10.0	3	100	0	60	66	0	0	33	0.92
1109558--1109616	24	2.5	24	97	0	109	25	18	32	23	1.97
1114240--1114285	13	3.8	13	75	13	53	30	4	0	65	1.12
1124505--1124699	54	3.6	54	79	2	185	18	34	21	25	1.96
1124468--1124734	27	9.9	27	70	1	158	17	33	20	27	1.96
1125940--1126007	14	5.1	14	68	8	52	19	4	4	72	1.19
1136974--1137000	2	13.5	2	100	0	54	0	48	0	51	1.00
1138357--1138437	42	2.0	42	95	2	146	25	18	9	45	1.80
1154844--1154881	18	2.2	17	86	9	51	65	2	0	31	1.06
1158668--1158704	12	2.9	12	92	8	56	75	0	24	0	0.80
1163700--1163736	17	2.1	17	90	5	56	10	10	8	70	1.35
1168462--1168496	2	18.0	2	88	5	54	48	0	0	51	1.00
1176262--1176303	2	21.0	2	90	0	66	54	0	0	45	0.99
1201454--1201491	14	2.6	14	91	8	58	73	0	0	26	0.83
1217226--1217279	23	2.3	23	78	12	56	37	3	5	53	1.42
1222459--1222654	100	2.0	101	83	9	249	30	10	6	53	1.60
1222681--1223152	171	2.8	172	95	0	838	37	13	9	40	1.76
1223024--1223366	182	1.9	182	84	8	466	35	9	8	46	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1223402--1223467	24	2.8	23	81	16	75	74	4	1	19	1.07
1223404--1223466	23	2.7	23	85	7	83	74	4	1	19	1.08
1223404--1223445	11	3.3	13	80	16	52	73	4	2	19	1.12
1223417--1223467	26	2.0	25	81	11	59	74	3	0	21	0.98
1225446--1225498	14	3.7	14	77	5	61	50	32	1	15	1.54
1225492--1225535	22	2.0	22	86	8	63	50	29	0	20	1.49
1226138--1226163	11	2.4	11	100	0	52	80	0	0	19	0.71
1228086--1228139	19	2.8	19	91	2	72	25	9	14	50	1.73
1230464--1230544	19	4.2	19	75	10	74	16	8	1	74	1.13
1231405--1231446	13	3.1	14	82	6	50	80	2	9	7	0.97
1231416--1231446	13	2.4	13	94	0	53	83	0	6	9	0.79
1231439--1231552	3	38.3	3	84	5	151	64	0	5	30	1.16
1232025--1232630	89	6.8	90	78	3	523	46	14	20	18	1.84
1232025--1232619	266	2.2	266	79	3	631	46	14	20	18	1.84
1242664--1242741	8	9.2	8	74	13	50	6	10	2	80	0.98
1245831--1245869	16	2.4	16	86	0	60	56	5	0	38	1.22
1249006--1249070	23	2.8	24	75	15	66	50	3	1	44	1.26
1249273--1249345	2	37.5	2	72	20	57	43	0	4	52	1.20
1249602--1249639	17	2.3	17	86	4	51	60	2	7	28	1.38
1252200--1252232	16	2.0	17	88	5	50	42	0	0	57	0.98
1252824--1252874	24	2.1	24	85	7	68	60	0	1	37	1.08
1252916--1253007	31	3.1	31	82	14	97	51	1	0	47	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1252945--1253025	39	2.2	38	84	10	105	54	1	0	44	1.08
1262161--1262209	21	2.3	20	83	16	55	22	0	4	73	1.00
1262386--1262439	3	18.0	3	96	0	99	66	1	0	31	1.02
1262481--1262532	21	2.3	21	83	9	59	71	5	1	21	1.17
1262492--1262544	11	4.5	11	79	9	52	73	0	3	22	0.99
1262492--1262541	21	2.3	20	86	10	64	74	0	4	22	0.99
1262492--1262545	23	2.4	21	84	9	63	72	0	3	24	1.01
1265246--1265276	15	2.1	15	94	5	55	41	3	0	54	1.16
1272838--1272874	19	1.9	19	94	0	65	62	0	2	35	1.10
1274959--1275007	13	3.8	13	83	0	53	36	0	0	63	0.95
1274973--1275044	24	3.0	23	79	6	72	44	0	1	54	1.08
1275036--1275078	18	2.4	18	92	0	68	69	0	0	30	0.88
1275930--1275998	35	2.0	35	94	0	120	52	2	5	39	1.41
1277441--1277471	16	1.9	16	93	0	53	58	0	6	35	1.24
1278618--1278648	13	2.4	13	94	0	53	32	19	19	29	1.96
1278942--1278971	2	15.0	2	92	0	51	50	3	0	46	1.18
1280431--1280521	4	22.8	4	72	18	57	19	4	1	74	1.05
1280431--1280521	11	8.3	11	69	23	50	19	4	1	74	1.05
1280458--1280521	17	3.8	16	73	22	60	20	3	1	75	1.03
1280453--1280531	38	2.1	38	81	9	90	20	6	2	70	1.20
1280548--1280574	13	2.1	13	100	0	54	77	0	0	22	0.76
1281428--1281722	61	4.9	60	87	2	407	50	4	8	37	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1285610--1285726	7	14.6	8	84	12	93	76	0	13	10	1.03
1285655--1285706	7	7.4	7	100	0	104	73	0	13	13	1.11
1285644--1285748	7	14.3	7	83	12	70	77	0	14	8	0.99
1285697--1285748	17	3.0	17	83	10	61	82	0	13	3	0.80
1285593--1285746	18	8.3	17	67	21	69	76	0	13	9	1.01
1285704--1285748	13	3.4	13	84	6	63	84	0	13	2	0.72
1285697--1285748	27	1.9	27	96	0	95	82	0	13	3	0.80
1286351--1286520	70	2.4	71	80	2	182	30	10	30	28	1.90
1286869--1287052	79	2.3	79	87	3	289	35	12	17	34	1.87
1286976--1287179	58	3.5	57	90	1	291	36	13	18	31	1.89
1287730--1287758	10	2.7	11	94	5	51	89	0	10	0	0.48
1287946--1288037	4	22.5	4	73	24	52	19	2	5	72	1.14
1287951--1288029	29	2.6	30	80	9	72	17	2	5	74	1.11
1288884--1288931	3	16.0	3	100	0	96	33	0	0	66	0.92
1288985--1289483	60	8.1	59	79	10	484	50	4	8	36	1.54
1289243--1289280	16	2.3	17	90	4	60	60	2	15	21	1.47
1289073--1289494	185	2.3	183	79	9	457	50	4	9	35	1.55
1289428--1289465	16	2.3	17	81	9	51	57	0	5	36	1.21
1290604--1290636	13	2.6	13	90	4	50	39	3	0	57	1.14
1290612--1290638	13	2.1	13	100	0	54	40	0	0	59	0.98
1290663--1290705	19	2.3	19	88	8	61	62	0	0	37	0.95
1297103--1297141	15	2.7	15	88	4	53	58	2	0	38	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1298265--1298335	28	2.6	28	73	13	67	56	1	4	38	1.28
1298432--1298467	12	3.0	12	91	0	54	44	0	0	55	0.99
1298594--1298633	20	2.0	20	85	4	55	25	0	17	57	1.40
1302654--1302683	6	5.0	6	100	0	60	50	0	50	0	1.00
1304889--1304913	5	5.0	5	100	0	50	40	0	0	60	0.97
1305607--1305647	22	1.9	21	85	14	57	51	4	0	43	1.23
1316856--1316912	30	1.9	30	96	0	105	40	15	12	31	1.85
1318319--1318364	22	2.1	22	95	0	83	8	19	19	52	1.72
1319865--1319929	34	1.9	34	96	0	121	24	16	24	33	1.96
1323679--1323709	15	2.1	15	93	0	53	48	0	0	51	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133