genome.fa.s645.2.7.7.80.10.50.1000.80.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  80  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15819889--15819950	30	2.1	30	90	0	97	40	19	12	27	1.88
15821217--15821257	19	2.2	19	95	0	73	24	4	17	53	1.63
15820969--15821491	278	1.9	277	87	0	776	31	6	18	42	1.77
15821323--15821684	158	2.3	158	84	1	451	32	6	19	41	1.77
15821714--15822000	157	1.8	159	81	4	364	34	7	16	41	1.76
15822324--15822382	24	2.5	24	85	0	73	28	6	37	27	1.82
15822322--15822389	12	5.7	12	70	6	57	30	5	35	27	1.81
15822846--15822935	29	3.2	29	79	13	98	35	16	11	36	1.84
15824062--15824091	2	15.0	2	100	0	60	50	0	0	50	1.00
15826079--15826104	12	2.2	12	100	0	52	50	0	0	50	1.00
15826606--15826649	19	2.3	18	81	11	52	65	0	2	31	1.05
15832191--15832231	16	2.4	18	80	12	50	36	7	0	56	1.27
15831897--15832269	207	1.8	207	86	2	545	44	4	9	41	1.57
15832753--15832790	18	2.2	17	86	9	51	52	2	0	44	1.14
15833429--15833627	100	2.0	103	90	4	323	41	6	13	38	1.71
15834347--15834421	35	2.1	34	81	13	82	41	5	2	50	1.39
15843087--15843137	21	2.5	20	84	12	59	27	21	33	17	1.96
15844718--15844744	13	2.1	13	100	0	54	22	0	0	77	0.76
15845343--15845379	16	2.3	16	90	0	56	29	8	5	56	1.51
15845402--15845456	20	2.8	20	72	5	58	36	7	7	49	1.58
15845475--15845640	56	3.0	55	82	6	185	30	5	7	57	1.48
15845475--15845606	53	2.4	53	87	3	174	31	5	6	56	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15845479--15845715	56	4.4	53	72	12	178	28	5	10	56	1.53
15845644--15845800	20	7.7	20	71	11	120	29	5	12	53	1.59
15845644--15845798	41	3.8	41	85	0	193	29	5	12	53	1.59
15845873--15845934	24	2.6	24	82	7	72	35	0	8	56	1.29
15846023--15846063	20	2.0	20	90	0	64	26	7	12	53	1.64
15846018--15846061	20	2.3	18	78	14	52	27	6	11	54	1.61
15847171--15847210	21	2.0	20	90	5	62	22	17	12	47	1.81
15847172--15847215	21	2.2	21	84	8	56	22	20	11	45	1.83
15852623--15852833	116	1.8	116	81	2	262	29	18	19	32	1.96
15853362--15853477	36	3.2	35	84	8	144	46	22	3	27	1.68
15862865--15862932	15	4.6	15	82	8	70	86	8	0	4	0.69
15862858--15862932	31	2.5	31	81	14	86	84	10	1	4	0.82
15862865--15862924	10	5.9	10	84	11	77	86	10	0	3	0.67
15862864--15862932	1	69.0	1	73	0	57	86	8	0	4	0.68
15862864--15862932	18	3.9	18	78	12	72	86	8	0	4	0.68
15864203--15864227	13	1.9	13	100	0	50	32	16	12	40	1.84
15864400--15864832	43	10.1	43	80	4	448	28	12	19	39	1.87
15865765--15865805	16	2.6	16	84	0	55	34	9	2	53	1.47
15865807--15865899	20	4.6	20	83	1	96	30	6	9	53	1.58
15865909--15866106	20	9.6	20	71	13	143	30	7	11	51	1.64
15865909--15866104	41	4.8	41	85	3	241	30	7	11	51	1.64
15866281--15866337	16	3.6	16	73	13	55	28	7	14	50	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15867111--15867143	14	2.3	15	89	5	50	51	0	0	48	1.00
15867277--15867303	10	2.7	10	100	0	54	18	11	48	22	1.79
15867369--15867415	21	2.4	19	82	7	58	29	6	8	55	1.55
15877666--15877715	23	2.1	25	85	7	68	42	2	10	46	1.49
15886652--15886726	36	2.0	39	84	10	102	74	1	12	12	1.13
15886659--15886701	13	3.1	14	80	6	52	76	0	11	11	1.02
15886677--15886720	22	2.0	21	86	4	61	77	2	11	9	1.08
15886669--15886727	28	2.2	26	82	14	68	79	1	10	8	1.00
15886670--15886727	13	4.5	13	71	28	52	79	1	10	8	1.01
15886704--15886742	19	2.0	20	85	5	53	74	2	17	5	1.12
15886669--15886784	26	4.5	25	71	17	67	75	1	14	8	1.12
15886748--15886790	19	2.3	19	88	8	61	76	4	9	9	1.14
15887578--15887686	28	3.9	28	80	4	130	34	20	7	37	1.80
15887578--15887652	15	5.3	14	71	12	64	34	18	9	37	1.83
15888583--15888666	18	4.8	17	80	8	78	29	14	11	44	1.81
15888640--15888677	17	2.2	18	90	4	60	26	5	13	55	1.59
15888708--15888741	18	1.9	18	88	5	52	38	11	8	41	1.73
15888865--15888931	21	3.2	20	72	19	57	34	10	14	40	1.81
15888871--15888935	22	3.1	21	75	16	64	33	10	15	40	1.82
15889461--15889498	12	3.1	12	85	14	51	81	5	5	7	0.98
15890068--15890190	51	2.5	48	80	7	122	40	14	10	34	1.81
15891083--15891121	20	1.9	20	89	5	60	38	5	2	53	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15892191--15892295	39	2.6	40	75	13	99	38	2	1	57	1.25
15893006--15893083	24	3.1	24	75	12	68	53	5	3	37	1.41
15893058--15893158	41	2.5	40	81	12	107	55	1	4	37	1.33
15893129--15893184	24	2.3	23	80	14	69	55	1	1	41	1.21
15894906--15895061	30	5.3	27	73	15	123	58	3	2	34	1.30
15894943--15895061	9	12.4	9	74	11	85	62	3	0	33	1.18
15894931--15895061	49	2.7	48	77	13	142	62	3	0	32	1.18
15894904--15895053	10	15.0	10	70	12	87	59	3	2	34	1.28
15894944--15895061	40	3.1	37	74	12	107	61	3	0	33	1.18
15898277--15898308	3	10.7	3	100	0	64	34	31	0	34	1.58
15900529--15900565	15	2.4	16	83	16	51	62	0	0	37	0.96
15901047--15901169	56	2.2	57	85	4	169	48	2	6	42	1.42
15906200--15906229	15	1.9	16	93	6	53	43	3	0	53	1.17
15906238--15906264	10	2.7	10	100	0	54	74	0	0	25	0.83
15908311--15908358	17	2.7	19	78	12	57	56	2	4	37	1.30
15909314--15909340	2	13.5	2	100	0	54	48	0	0	51	1.00
15911114--15911148	2	17.5	2	93	0	61	45	0	0	54	0.99
15918893--15919051	65	2.5	66	79	7	166	35	11	3	49	1.57
15920039--15920072	3	11.3	3	93	0	59	29	0	0	70	0.87
15920071--15920102	11	2.9	11	95	0	55	71	3	0	25	1.00
15933144--15933183	21	1.9	21	89	0	62	77	2	15	5	1.04
15933828--15933904	38	2.0	38	92	0	127	23	6	19	50	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15940887--15941015	59	2.2	59	80	12	167	31	7	10	50	1.66
15941126--15941161	17	2.1	17	94	0	63	38	0	13	47	1.44
15942478--15942651	61	3.0	57	77	14	201	32	5	9	52	1.57
15943746--15943811	32	2.1	32	83	11	82	71	4	7	16	1.26
15943767--15943882	12	9.5	12	66	19	53	68	3	6	21	1.26
15943864--15943910	19	2.5	19	82	6	60	70	8	2	19	1.24
15953233--15953280	25	1.9	25	95	0	87	39	22	8	29	1.83
15960885--15960909	1	25.0	1	100	0	50	100	0	0	0	0.00
15961317--15961362	19	2.4	18	82	10	56	54	4	2	39	1.32
15961377--15961418	19	2.2	19	87	8	59	61	9	0	28	1.27
15961377--15961419	20	2.2	19	87	4	59	62	9	0	27	1.25
15961426--15961469	23	1.9	23	86	9	63	54	6	2	36	1.40
15961505--15961546	11	4.0	11	80	20	54	45	2	0	52	1.13
15961499--15961541	20	2.1	21	86	4	61	55	2	0	41	1.12
15961505--15961548	21	2.2	20	91	4	70	47	2	0	50	1.13
15961507--15961546	10	3.9	10	80	6	53	45	2	0	52	1.14
15961709--15961742	18	1.9	17	94	5	59	41	0	2	55	1.15
15961679--15961735	30	1.9	30	82	7	71	43	0	1	54	1.10
15961727--15961772	20	2.3	20	77	11	58	52	4	0	43	1.21
15961733--15961770	20	2.0	20	89	5	60	52	5	0	42	1.24
15961850--15961897	13	3.4	13	78	18	51	60	2	2	35	1.20
15961843--15961929	21	4.2	20	72	21	63	57	2	2	37	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15961945--15962115	9	18.0	9	72	16	55	39	2	4	54	1.32
15961945--15962115	10	17.9	10	73	13	73	39	2	4	54	1.32
15962058--15962091	15	2.2	16	94	5	61	23	0	2	73	0.97
15962176--15962220	10	4.4	10	80	5	54	31	0	2	66	1.04
15962176--15962230	21	2.7	20	82	5	56	29	0	3	67	1.08
15962616--15962748	70	1.9	69	81	4	160	40	9	7	42	1.66
15962845--15964303	521	2.9	499	84	4	1790	41	10	8	38	1.70
15962698--15964303	253	6.3	253	82	6	1748	41	10	8	39	1.70
15972217--15972291	30	2.5	30	86	2	105	13	2	20	64	1.40
15975629--15975663	18	1.9	18	88	0	52	37	17	20	25	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133