genome.fa.s645.2.7.7.80.10.50.1000.83.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  83  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16317593--16317642	17	2.9	17	80	14	57	0	20	4	76	0.95
16318051--16318098	25	2.0	24	87	4	69	8	6	16	68	1.35
16319798--16319856	20	2.9	20	82	7	57	28	13	16	40	1.87
16333121--16333476	182	2.0	181	93	0	604	30	20	15	33	1.93
16337800--16337841	22	2.0	21	90	4	66	35	7	0	57	1.26
16337800--16337841	11	3.9	11	84	3	59	35	7	0	57	1.26
16343318--16343375	28	2.1	28	100	0	116	46	17	3	32	1.65
16343318--16343389	28	2.6	27	91	6	101	43	20	4	31	1.71
16345783--16346094	158	2.0	158	97	0	588	34	16	9	39	1.81
16351116--16351151	18	2.0	18	94	0	63	36	11	16	36	1.84
16362349--16362376	10	2.8	10	100	0	56	10	10	39	39	1.75
16363000--16363156	79	2.0	79	89	2	244	22	14	21	42	1.88
16372292--16372437	43	3.4	43	72	4	134	43	10	9	35	1.73
16377328--16377618	44	6.7	44	80	6	247	47	15	12	24	1.80
16377317--16377618	85	3.5	85	76	10	265	46	15	13	24	1.81
16377310--16377611	90	3.4	87	75	8	281	46	15	12	25	1.81
16377339--16377618	134	2.2	126	80	5	299	47	15	12	24	1.80
16387624--16387663	20	2.0	21	85	5	55	42	5	2	50	1.37
16387678--16387742	26	2.7	24	83	11	71	44	9	4	41	1.57
16387703--16387746	24	1.9	24	90	9	74	43	9	4	43	1.56
16389099--16389134	15	2.3	16	90	4	56	27	16	0	55	1.42
16391793--16391833	3	13.7	3	100	0	82	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16391837--16391862	3	8.7	3	100	0	52	30	0	0	69	0.89
16396973--16397021	21	2.3	21	96	0	89	44	16	4	34	1.66
16402180--16402237	23	2.5	23	80	11	64	8	15	5	70	1.30
16402866--16402912	24	1.9	25	83	12	62	53	4	10	31	1.55
16402562--16402973	144	2.9	145	82	2	499	40	11	14	33	1.82
16403636--16403725	37	2.5	35	78	7	90	33	18	17	30	1.95
16404053--16404164	41	2.8	40	84	9	138	37	8	18	34	1.82
16406751--16406797	19	2.4	19	82	3	58	27	8	12	51	1.69
16406751--16406791	20	2.1	20	86	4	57	29	9	9	51	1.67
16411667--16411713	20	2.4	20	79	10	53	68	2	10	19	1.30
16412155--16412221	27	2.5	27	90	0	107	49	8	0	41	1.34
16423320--16423351	2	16.5	2	93	6	57	46	0	0	53	1.00
16424245--16424279	10	3.5	10	84	0	52	0	5	5	88	0.63
16424474--16424506	13	2.3	15	90	10	52	0	6	9	84	0.76
16424892--16424924	14	2.3	15	89	5	50	15	0	9	75	1.03
16424890--16424925	15	2.4	14	86	13	54	13	0	8	77	0.98
16425294--16425335	20	2.0	21	86	4	59	45	0	2	52	1.13
16433102--16433235	66	2.0	68	83	12	172	52	4	7	35	1.50
16433169--16433355	63	3.1	59	82	10	211	51	4	8	35	1.54
16437791--16437831	10	4.4	9	82	17	57	87	2	9	0	0.62
16437790--16437833	14	3.1	15	80	9	56	86	2	11	0	0.66
16437792--16437833	8	5.1	8	83	13	50	85	2	11	0	0.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16437792--16437831	18	2.2	18	95	0	71	87	2	10	0	0.63
16438674--16438960	141	2.0	140	97	0	538	35	13	16	34	1.88
16439788--16439847	22	2.7	23	81	2	77	26	20	20	33	1.97
16442363--16442497	68	2.0	66	83	9	166	54	4	8	33	1.50
16460209--16460255	24	1.9	25	91	4	78	40	14	12	31	1.84
16462894--16462953	30	2.0	30	90	0	93	38	18	10	33	1.84
16470260--16470302	12	3.3	13	87	9	61	69	0	4	25	1.07
16478159--16478202	17	2.5	17	82	10	54	38	0	4	56	1.20
16483381--16483409	3	9.7	3	100	0	58	31	0	0	68	0.89
16485911--16485948	16	2.4	16	90	0	58	39	2	10	47	1.52
16487550--16487941	195	2.0	194	98	0	757	24	22	9	43	1.83
16497670--16497704	18	2.0	18	88	5	54	48	0	11	40	1.39
16498246--16498284	19	2.1	18	85	4	51	69	10	0	20	1.17
16500181--16500222	22	1.9	22	90	0	66	28	4	23	42	1.74
16503092--16503157	34	1.9	34	84	6	89	39	6	16	37	1.74
16504223--16504251	14	2.0	15	93	6	51	24	0	0	75	0.80
16504519--16504561	20	2.2	20	83	4	52	46	4	0	48	1.22
16506401--16506547	55	2.7	53	82	3	177	34	13	8	44	1.74
16510377--16510548	33	5.0	33	73	12	150	47	18	5	27	1.71
16510320--16510541	106	2.1	106	94	0	390	47	18	6	27	1.73
16514687--16514724	17	2.2	18	86	9	53	34	5	2	57	1.35
16517615--16517647	15	2.3	15	89	5	50	60	15	9	15	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16532743--16533137	33	12.4	32	72	10	190	31	20	17	30	1.95
16532875--16532952	28	2.8	28	92	3	122	33	19	12	34	1.90
16532928--16533114	65	2.9	65	75	3	178	34	17	16	31	1.92
16533279--16533345	6	11.3	6	79	6	57	2	19	0	77	0.89
16534070--16534114	23	2.0	23	82	8	56	15	17	6	60	1.56
16535960--16536009	6	8.7	6	78	8	50	0	20	0	80	0.72
16542177--16542215	19	2.1	19	85	0	51	17	5	2	74	1.12
16542532--16542597	15	4.4	15	75	11	64	22	6	1	69	1.19
16547158--16547231	3	24.7	3	94	0	130	64	1	1	32	1.10
16547558--16547591	14	2.3	15	90	5	52	73	2	0	23	0.97
16556714--16557153	70	6.3	69	74	13	271	23	21	10	44	1.84
16556710--16557240	105	5.1	105	75	10	367	22	21	11	43	1.85
16556714--16557331	35	17.7	35	68	14	217	23	22	11	43	1.85
16557733--16557764	11	2.9	11	100	0	64	28	28	15	28	1.96
16558150--16558176	12	2.2	12	100	0	54	22	7	22	48	1.75
16560268--16560299	3	10.7	3	100	0	64	34	0	31	34	1.58
16567396--16567525	41	3.1	41	94	1	224	38	17	3	40	1.68
16567396--16567497	18	4.8	23	68	23	89	39	18	3	38	1.69
16567404--16567510	18	5.2	21	69	20	82	42	16	4	36	1.70
16568751--16568783	12	2.6	13	85	9	50	69	6	0	24	1.10
16569569--16569743	87	2.0	87	96	0	323	38	9	20	31	1.84
16570061--16570103	14	3.1	13	80	12	50	11	9	9	69	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16572468--16572532	34	2.0	33	93	6	114	38	15	16	29	1.90
16589086--16589145	20	3.1	20	72	11	54	35	11	5	48	1.61
16595698--16596613	309	3.0	310	95	0	1638	39	15	13	30	1.86
16598604--16598839	117	2.0	117	100	0	472	43	17	10	28	1.82
16610753--16610798	18	2.6	18	96	0	83	19	10	6	63	1.48
16615584--16615828	59	4.1	59	84	5	316	37	7	5	49	1.54
16615584--16615828	121	2.1	117	89	4	366	37	7	5	49	1.54
16616416--16616614	42	4.8	42	94	0	328	45	19	12	23	1.84
16616892--16616930	20	2.0	20	89	0	60	25	20	15	38	1.92
16616953--16616992	21	1.9	21	94	0	71	32	20	10	37	1.85
16616902--16617201	137	2.2	137	83	3	379	31	18	11	39	1.86
16616975--16617105	58	2.3	58	86	7	196	30	18	10	40	1.84
16617042--16617208	79	2.1	79	89	2	255	31	17	11	38	1.87
16617174--16617225	22	2.4	22	83	3	70	34	19	9	36	1.84
16618380--16618413	11	3.2	11	83	8	52	0	14	0	85	0.60
16618373--16618409	12	3.2	11	88	11	56	2	10	0	86	0.67
16622290--16622539	121	2.1	121	88	3	371	36	9	6	48	1.61
16622290--16622538	61	4.1	60	89	4	367	36	9	6	48	1.61
16623386--16623428	18	2.4	18	84	0	50	11	9	0	79	0.95
16625230--16625285	29	1.9	29	85	7	78	57	10	14	17	1.65
16625480--16625506	13	2.1	13	100	0	54	37	14	22	25	1.93
16629009--16629045	17	2.2	17	90	0	56	10	13	8	67	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16630927--16630972	18	2.6	18	96	0	83	17	8	6	67	1.39
16641015--16641122	54	2.0	54	100	0	216	42	12	18	25	1.86
16644940--16645015	39	2.0	38	86	2	107	50	5	19	25	1.69
16650772--16650807	18	2.1	17	89	5	54	77	2	13	5	1.05
16652548--16652592	22	2.0	22	82	0	54	26	13	17	42	1.86
16652866--16652969	24	4.5	21	77	14	91	30	6	13	49	1.68
16652869--16653204	22	14.8	22	68	13	162	34	8	15	41	1.76
16653261--16653318	21	2.8	21	81	5	64	27	1	22	48	1.60
16653468--16653548	22	3.8	22	80	9	96	33	12	13	40	1.82
16657218--16657272	19	2.8	19	78	8	58	29	3	1	65	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133