genome.fa.s645.2.7.7.80.10.50.1000.30.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  30  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6962005--6962063	24	2.4	25	86	5	77	16	37	10	35	1.83
6962059--6962170	31	3.6	31	95	0	188	26	25	19	28	1.99
6962654--6962755	52	2.0	52	84	7	136	25	25	8	40	1.84
6962784--6962814	11	2.8	11	100	0	62	51	29	0	19	1.47
6970364--6970407	23	1.9	23	81	9	54	22	2	2	72	1.07
6983287--6983371	2	42.5	2	80	0	71	44	7	5	42	1.55
6986908--6986951	20	2.2	20	85	14	65	52	0	0	47	1.00
6986896--6986951	21	2.8	20	83	10	69	51	0	0	48	1.00
6992210--6992238	15	1.9	15	100	0	58	55	0	13	31	1.39
6994248--6994272	4	6.2	4	100	0	50	24	52	24	0	1.48
6994747--6994777	2	15.5	2	100	0	62	51	0	0	48	1.00
6999548--6999584	14	2.8	13	88	8	56	37	0	0	62	0.96
7000035--7000068	4	8.5	4	93	0	59	47	0	2	50	1.16
7000190--7000222	2	17.0	2	93	6	59	48	0	0	51	1.00
7001893--7001922	12	2.6	11	90	10	51	73	0	0	26	0.84
7002157--7002244	41	2.1	41	78	14	92	44	3	1	51	1.25
7006624--7006666	16	2.6	16	85	7	50	41	0	2	55	1.12
7007382--7007459	29	2.7	27	76	18	70	44	3	2	48	1.34
7007750--7007780	11	2.8	11	90	0	53	0	6	3	90	0.55
7007789--7007818	12	2.5	12	88	0	51	6	3	6	83	0.90
7008116--7008316	59	3.4	55	80	14	224	37	13	6	41	1.72
7008125--7008315	63	3.1	63	85	10	236	36	14	6	41	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7008189--7008394	59	3.5	57	81	9	229	36	13	6	43	1.70
7008114--7008394	120	2.3	120	82	7	322	37	13	6	42	1.69
7008412--7008537	12	11.9	10	73	19	80	73	1	3	21	1.05
7008489--7008537	16	3.1	16	80	16	57	77	0	0	22	0.77
7009324--7009356	12	2.7	12	95	4	57	84	6	0	9	0.76
7009422--7009470	14	3.6	14	74	25	52	59	2	6	32	1.34
7009407--7009452	14	2.9	17	75	21	55	63	2	6	28	1.31
7009425--7009482	26	2.4	23	78	18	64	62	1	3	32	1.22
7009425--7009485	25	2.5	25	89	7	90	62	1	3	32	1.21
7009407--7009471	16	4.6	15	71	25	52	61	3	6	29	1.35
7009525--7009630	21	5.1	20	74	12	72	69	2	1	25	1.12
7009564--7009631	21	3.2	21	80	14	77	75	1	0	23	0.89
7009571--7009615	16	2.8	17	80	13	58	73	0	0	26	0.84
7009537--7009630	28	3.4	27	82	7	100	72	3	2	22	1.10
7009564--7009630	7	9.6	7	80	15	68	74	1	0	23	0.90
7009537--7009630	27	3.4	27	80	10	75	72	3	2	22	1.10
7009904--7009942	19	2.1	19	85	4	53	7	5	5	82	0.96
7012060--7012220	60	2.7	60	87	4	213	35	11	7	45	1.68
7012240--7012312	12	6.5	11	86	10	103	79	0	2	17	0.85
7012240--7012312	6	12.8	6	79	15	84	79	0	2	17	0.85
7012256--7012308	27	1.9	27	92	3	88	81	0	3	15	0.83
7013245--7013358	14	7.8	15	76	15	89	63	2	2	31	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7013268--7013475	22	9.8	22	73	14	145	62	1	3	31	1.23
7013261--7013473	56	3.7	56	75	17	156	63	1	3	30	1.23
7013264--7013540	64	4.9	58	71	20	130	65	2	3	28	1.21
7013487--7013533	14	3.4	14	88	8	69	74	2	2	21	1.03
7013484--7013531	20	2.5	19	80	12	53	75	2	2	20	1.02
7013460--7013542	15	5.6	14	75	11	67	73	2	2	21	1.06
7013689--7013713	13	1.9	13	100	0	50	24	0	0	76	0.80
7013792--7013840	9	5.6	9	79	11	57	10	14	0	75	1.04
7015114--7015157	23	1.9	23	86	9	63	75	4	2	18	1.09
7016511--7016553	17	2.4	18	81	14	54	16	0	6	76	0.99
7017578--7017642	28	2.4	26	80	12	76	16	3	4	75	1.10
7017609--7017661	23	2.3	23	86	3	70	18	1	3	75	1.05
7017597--7017640	17	2.6	17	82	10	63	15	2	4	77	1.04
7017781--7017817	15	2.4	16	86	13	51	37	5	0	56	1.22
7017784--7017939	41	3.9	41	89	1	217	33	2	8	55	1.43
7017838--7017940	12	7.8	13	69	23	65	33	0	9	55	1.39
7018006--7018089	16	5.2	16	72	11	64	28	8	15	47	1.74
7018033--7018107	34	2.2	35	88	7	109	33	6	12	48	1.66
7021082--7021126	18	2.6	17	83	16	65	24	0	15	60	1.36
7023199--7023251	25	2.2	24	96	3	97	37	15	9	37	1.79
7032326--7032417	35	2.6	35	92	0	157	50	18	16	15	1.79
7032285--7032492	105	2.0	107	79	1	231	48	15	18	17	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7032315--7032468	35	4.4	35	82	0	146	46	15	20	17	1.84
7032285--7032468	70	2.6	69	78	1	188	47	14	19	18	1.82
7032534--7032733	35	5.6	35	71	2	103	48	13	20	18	1.80
7032534--7032674	70	2.0	70	80	0	156	45	11	22	20	1.83
7032876--7033050	34	5.2	34	75	1	154	28	15	19	36	1.92
7032870--7032997	68	1.9	68	85	3	177	26	14	20	39	1.90
7033407--7033616	106	2.0	106	99	0	411	36	15	15	32	1.89
7033800--7033979	34	5.3	35	70	9	104	32	16	14	37	1.88
7033785--7034011	102	2.2	102	83	4	280	31	17	14	36	1.90
7033824--7034007	33	5.4	34	69	13	94	32	15	15	36	1.89
7034112--7034148	17	2.2	17	90	9	58	0	13	0	86	0.57
7034182--7034222	12	3.5	12	80	12	50	0	19	2	78	0.87
7034374--7034437	24	2.6	24	87	2	92	43	9	15	31	1.78
7035785--7035850	5	13.6	5	77	13	50	6	15	0	78	0.93
7035803--7035850	21	2.4	19	78	18	53	8	16	0	75	1.04
7039587--7039628	21	2.0	21	86	4	59	59	4	9	26	1.48
7048576--7048679	43	2.4	44	79	4	122	29	25	16	28	1.97
7048626--7048711	22	4.0	21	74	15	59	33	24	13	27	1.94
7049195--7049265	21	3.3	21	69	11	54	33	12	12	40	1.81
7049779--7049863	44	1.9	44	80	4	100	32	11	15	40	1.83
7049829--7049909	22	3.5	23	72	11	67	40	7	11	40	1.69
7049899--7050015	19	6.1	19	82	5	119	28	11	11	49	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7049902--7049977	39	1.9	39	94	0	134	26	13	11	48	1.76
7049903--7049986	39	2.2	39	88	0	123	27	13	10	48	1.75
7052854--7052901	17	2.8	17	83	0	69	45	2	0	52	1.12
7054083--7054115	17	1.9	17	93	0	57	66	6	0	27	1.15
7054273--7054310	20	1.9	20	84	10	51	52	0	2	44	1.14
7054770--7054798	13	2.1	14	93	6	51	48	0	3	48	1.18
7057235--7057363	65	2.0	65	86	3	179	41	10	10	36	1.75
7070362--7070610	80	3.2	79	78	7	274	41	25	10	23	1.85
7080245--7080332	34	2.7	32	73	5	79	38	23	12	25	1.90
7080257--7080637	134	2.8	133	79	6	412	39	19	12	28	1.88
7080474--7080552	33	2.4	33	80	4	88	43	20	8	27	1.81
7083450--7083501	20	2.6	19	82	8	59	63	1	3	30	1.23
7088283--7088324	21	2.0	21	90	0	66	21	11	28	38	1.89
7094628--7094783	84	1.9	85	89	2	244	44	19	7	28	1.78
7096818--7096869	20	2.6	19	82	14	61	63	1	1	32	1.16
7100144--7100180	14	2.6	14	91	0	56	59	0	0	40	0.97
7101721--7101789	30	2.3	30	82	7	77	49	31	0	18	1.48
7101828--7101890	14	4.4	14	80	9	74	50	28	0	20	1.48
7101823--7101900	21	3.7	20	70	11	57	50	30	0	19	1.48
7101828--7101891	28	2.2	29	83	8	87	51	28	0	20	1.47
7105829--7105865	19	1.9	19	94	0	65	24	8	5	62	1.44
7111773--7111811	2	19.5	2	89	0	51	41	2	0	56	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7111777--7111814	12	3.2	12	84	0	58	39	5	0	55	1.23
7111779--7111828	24	2.0	25	88	3	75	40	4	2	54	1.31
7112147--7112180	16	2.1	16	94	0	59	58	2	0	38	1.13
7117713--7117887	18	10.2	17	67	22	82	41	0	2	56	1.16
7117713--7117869	22	6.9	22	72	17	83	41	0	1	56	1.15
7118391--7118457	35	1.9	35	85	11	93	47	0	1	50	1.10
7120795--7120834	21	2.0	20	85	5	53	35	2	12	50	1.54
7121197--7121260	33	1.9	33	90	0	101	40	3	14	42	1.61
7130668--7130735	23	3.0	23	77	14	68	60	1	0	38	1.06
7132755--7132795	20	2.1	19	86	4	55	12	7	0	80	0.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133