genome.fa.s645.2.7.7.80.10.50.1000.70.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  70  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13706752--13706859	52	2.1	52	83	10	132	32	9	15	42	1.79
13706895--13706966	35	2.1	35	91	0	117	31	12	20	34	1.90
13710099--13710170	28	2.6	28	78	8	83	45	29	6	18	1.75
13711057--13711376	128	2.5	127	87	3	430	39	11	15	34	1.83
13711031--13711400	62	5.9	59	69	13	193	40	11	14	33	1.82
13712328--13712360	17	1.9	17	88	11	50	30	36	0	33	1.58
13719273--13720119	288	2.9	291	91	2	1312	38	10	9	41	1.72
13725416--13725470	23	2.4	23	87	0	74	23	30	27	18	1.97
13725583--13725684	44	2.3	45	84	1	125	28	18	28	24	1.98
13730562--13730589	14	2.0	14	100	0	56	28	28	28	14	1.95
13766196--13766237	20	2.1	20	95	0	75	61	11	9	16	1.55
13766736--13766772	19	1.9	19	88	0	56	48	10	16	24	1.77
13767034--13767074	10	3.8	11	78	15	50	46	24	9	19	1.80
13774737--13774761	12	2.1	12	100	0	50	20	8	16	56	1.65
13775006--13775046	18	2.3	19	87	8	59	12	12	0	75	1.05
13791403--13791442	21	1.9	21	94	0	71	57	10	10	22	1.61
13798431--13798866	222	2.0	213	91	4	712	27	12	19	39	1.89
13799037--13799062	2	13.0	2	100	0	52	50	0	0	50	1.00
13804679--13804758	39	2.1	39	85	0	106	25	3	38	32	1.73
13805190--13805477	146	2.0	145	88	3	436	29	15	17	36	1.92
13806836--13807037	63	3.2	63	73	8	196	33	16	17	32	1.93
13806715--13807037	125	2.6	122	81	7	346	32	15	17	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13810558--13810599	5	8.6	5	82	12	52	80	0	16	2	0.81
13814917--13814947	2	15.5	2	100	0	62	51	0	0	48	1.00
13817555--13817620	30	2.2	30	84	7	82	53	0	3	43	1.16
13818124--13818182	29	2.0	29	100	0	118	23	16	16	42	1.89
13819129--13819480	65	5.5	65	75	12	266	39	8	6	44	1.62
13819125--13819461	64	5.2	65	78	11	245	38	8	6	45	1.61
13819261--13819479	63	3.4	62	74	9	167	39	9	6	44	1.63
13819237--13819479	127	1.9	130	80	11	295	39	9	6	45	1.62
13840787--13840915	60	2.2	60	87	2	179	25	16	13	44	1.83
13844117--13844243	55	2.3	55	82	2	148	27	11	12	48	1.74
13847446--13847476	15	2.1	15	93	0	53	29	16	6	48	1.70
13851810--13852073	125	2.1	126	80	4	293	35	14	13	36	1.86
13852041--13852141	47	2.1	47	81	3	114	33	15	12	37	1.86
13852140--13852211	23	3.4	23	61	21	57	25	8	20	45	1.79
13852131--13852216	40	2.1	41	95	2	156	27	6	19	45	1.76
13856341--13856811	64	7.4	64	74	9	259	33	13	13	39	1.83
13856352--13856709	128	2.8	125	79	9	330	35	13	12	38	1.82
13856411--13856748	64	5.3	61	76	10	261	34	12	13	39	1.83
13856507--13856748	127	1.9	128	83	9	316	35	13	11	39	1.81
13856401--13856897	64	7.9	62	74	12	219	33	14	12	39	1.84
13858333--13858358	12	2.2	12	100	0	52	34	42	0	23	1.54
13860802--13860844	22	2.0	22	86	9	61	13	4	11	69	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13863951--13864007	25	2.3	25	90	0	87	38	3	1	56	1.27
13873922--13873961	21	1.9	21	89	0	62	25	7	25	42	1.80
13873921--13873967	21	2.2	21	80	0	58	25	8	23	42	1.82
13879290--13879328	20	1.9	20	89	5	60	30	0	5	64	1.15
13880839--13880891	24	2.2	24	83	10	63	28	3	1	66	1.20
13881285--13881340	8	6.8	8	80	15	51	14	1	1	82	0.84
13881284--13881341	9	6.8	9	79	15	61	13	1	1	82	0.82
13881296--13881356	15	3.9	15	76	18	54	9	3	3	83	0.87
13881426--13881504	34	2.4	31	83	10	95	31	15	18	34	1.92
13881670--13881804	22	6.1	22	74	3	110	23	17	24	34	1.95
13887279--13887431	76	2.0	76	98	0	297	22	21	15	39	1.91
13888658--13888949	146	2.0	146	95	0	523	56	14	7	22	1.62
13890641--13890676	13	2.8	13	91	0	54	13	11	25	50	1.75
13892555--13892579	10	2.5	10	100	0	50	8	8	0	84	0.79
13892606--13892634	11	2.7	11	94	5	51	24	0	0	75	0.80
13899601--13900403	161	5.0	161	78	7	727	39	15	12	31	1.85
13899594--13900381	321	2.4	322	79	7	857	39	15	12	32	1.85
13900943--13900992	19	2.6	19	96	3	91	50	26	14	10	1.73
13909337--13909378	20	2.0	21	95	4	77	16	0	19	64	1.30
13914750--13914871	61	2.0	63	88	3	185	31	8	21	39	1.82
13918850--13918878	10	2.9	10	100	0	58	27	10	41	20	1.85
13920232--13920280	24	1.9	27	88	12	77	18	4	6	71	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13923633--13923669	17	2.2	17	90	4	58	83	0	10	5	0.79
13923677--13923706	11	2.8	11	95	5	53	80	0	20	0	0.72
13923681--13923759	41	1.9	42	84	7	108	72	1	22	3	1.08
13923724--13923762	13	2.9	13	85	14	53	76	2	20	0	0.90
13932541--13932573	17	2.0	17	94	5	59	75	0	18	6	1.00
13934385--13934414	12	2.5	12	100	0	60	73	0	20	6	1.05
13942403--13942484	37	2.2	37	100	0	164	45	43	2	8	1.47
13942414--13942474	18	3.3	18	81	4	86	47	42	3	6	1.45
13942566--13942610	19	2.4	19	85	3	65	40	44	0	15	1.47
13942751--13942797	22	2.1	22	85	14	62	27	17	10	44	1.81
13943603--13943636	14	2.5	13	86	9	50	29	5	0	64	1.17
13944248--13944312	29	2.3	29	91	2	105	27	3	7	61	1.38
13944395--13944469	7	11.0	7	76	18	70	81	0	14	4	0.83
13944395--13944469	33	2.2	33	88	4	105	81	0	14	4	0.83
13944422--13944467	11	4.2	11	78	10	58	86	0	13	0	0.56
13944395--13944467	26	2.7	26	85	12	87	82	0	13	4	0.81
13945750--13945834	38	2.2	39	83	4	111	37	17	18	25	1.93
13957217--13957368	50	3.0	50	83	5	209	31	11	17	40	1.84
13958852--13958957	18	5.6	18	70	20	72	45	38	2	13	1.58
13958888--13958940	12	3.9	12	74	25	52	47	37	1	13	1.54
13958868--13958969	30	3.5	30	93	2	163	45	38	2	13	1.59
13958928--13958969	18	2.4	18	88	4	59	47	35	2	14	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13959060--13959119	30	2.0	30	93	0	102	46	36	0	16	1.47
13959179--13959235	29	2.0	29	82	6	71	45	36	3	14	1.61
13963944--13964041	42	2.4	39	73	18	92	35	6	1	57	1.31
13965675--13965771	10	10.2	10	75	18	84	28	2	0	69	1.00
13965661--13965750	16	5.4	16	72	20	53	27	3	1	67	1.13
13965675--13965747	3	24.7	3	80	13	80	30	2	0	67	1.05
13965685--13965767	14	5.9	14	78	14	82	30	1	0	68	0.97
13965679--13965767	11	7.6	11	80	12	72	29	2	0	68	1.02
13982213--13982255	19	2.3	19	84	8	52	34	9	11	44	1.73
13982459--13982504	22	2.1	21	96	4	83	21	6	8	63	1.46
13985980--13986009	14	2.1	14	93	0	51	33	6	3	56	1.42
13994623--13994663	18	2.3	18	95	4	75	31	9	17	41	1.82
13996151--13996179	15	1.9	15	100	0	58	27	10	0	62	1.28
13997562--13997622	30	2.0	30	100	0	122	32	13	16	37	1.87
13998582--13998644	31	2.0	31	93	0	108	38	9	14	38	1.78
14008559--14008613	21	2.6	21	97	0	101	34	18	16	30	1.93
14009556--14009612	17	3.2	17	78	14	62	78	1	7	12	1.01
14009860--14009889	10	2.9	10	95	5	51	90	6	3	0	0.56
14014226--14014257	16	1.9	17	93	6	57	62	21	9	6	1.47
14016477--14016539	29	2.1	29	83	13	76	36	4	6	52	1.48
14017890--14018001	55	2.0	55	87	0	161	54	4	9	31	1.53
14019190--14019242	20	2.5	21	81	9	63	60	3	7	28	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14024998--14025132	72	1.9	72	83	6	177	41	9	4	44	1.57
14025047--14025253	111	1.9	112	80	6	251	34	10	7	47	1.67
14025484--14025859	72	5.2	72	75	5	283	40	11	5	42	1.66
14025578--14025851	146	1.9	147	82	3	347	41	11	4	41	1.62
14030689--14030728	18	2.3	18	91	4	64	42	10	10	37	1.72
14034060--14034122	19	3.3	19	84	0	81	19	3	38	39	1.67
14034041--14034124	38	2.2	39	77	10	93	15	2	44	38	1.60
14034112--14034151	21	1.9	21	84	0	53	17	0	35	47	1.48
14034228--14034300	22	3.1	22	67	24	58	50	12	13	23	1.75
14034194--14034325	49	2.7	49	90	0	219	46	9	15	27	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133