genome.fa.s645.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  2  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
182771--182827	25	2.2	25	81	9	62	24	5	5	64	1.35
182841--182871	15	2.1	15	94	5	55	12	6	3	77	1.08
183229--183304	38	2.0	38	81	0	89	27	25	17	30	1.97
183258--183304	19	2.5	19	89	0	67	25	29	17	27	1.97
183807--183886	11	7.4	11	77	14	60	12	5	2	80	0.98
183807--183876	17	4.2	17	76	12	74	12	5	1	80	0.96
183793--183863	32	2.2	32	82	5	81	15	4	1	78	0.97
183807--183886	33	2.4	34	85	8	103	12	5	2	80	0.98
183814--183890	22	3.6	22	81	10	97	11	5	2	80	0.97
183911--184001	27	3.2	27	65	22	69	40	5	15	38	1.70
196728--196760	16	2.1	16	94	5	59	0	12	0	87	0.53
198971--199009	21	1.9	20	84	5	51	56	2	5	35	1.35
199121--199150	14	2.1	15	93	6	53	46	0	0	53	1.00
200567--200635	36	1.9	36	85	5	95	36	15	2	44	1.62
201595--201624	2	15.0	2	100	0	60	50	0	0	50	1.00
204848--204893	2	24.0	2	86	8	69	52	0	0	47	1.00
205096--205126	2	16.0	2	93	6	55	48	0	0	51	1.00
207534--207583	2	25.0	2	87	0	73	44	0	0	56	0.99
219419--219464	23	2.0	23	95	0	83	28	17	21	32	1.96
219981--220009	4	7.2	4	100	0	58	24	0	0	75	0.80
220488--220522	3	11.7	3	93	0	61	0	0	28	71	0.86
225469--225504	6	5.8	6	93	3	54	52	0	47	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
226403--226437	2	17.5	2	93	0	61	0	48	0	51	1.00
235213--235271	30	1.9	30	82	3	73	32	10	5	52	1.57
235324--235365	18	2.4	18	82	17	54	52	2	7	38	1.42
236630--236683	23	2.3	22	77	20	56	59	0	1	38	1.08
236708--236736	12	2.5	12	94	5	51	48	0	0	51	1.00
243158--243246	32	2.9	30	81	8	83	42	7	1	48	1.39
243663--243694	16	1.9	17	93	6	57	34	0	0	65	0.93
251342--251374	2	16.5	2	100	0	66	51	0	0	48	1.00
259619--259661	23	2.0	21	86	9	59	51	2	0	46	1.13
262563--262587	2	12.5	2	100	0	50	52	0	48	0	1.00
264182--264208	1	27.0	1	100	0	54	100	0	0	0	0.00
267110--267233	54	2.3	54	83	2	151	25	29	14	31	1.95
267110--267250	54	2.6	53	81	2	138	24	29	14	31	1.94
267886--267931	24	1.9	24	86	0	65	13	39	15	32	1.85
272413--272465	18	2.9	18	91	2	79	58	24	15	1	1.47
273100--273131	12	2.7	12	95	0	55	46	0	0	53	1.00
273672--273705	3	11.3	3	100	0	68	0	0	32	67	0.91
277328--277376	16	2.7	19	76	23	61	55	2	0	42	1.11
279866--279906	10	4.3	10	80	20	52	65	2	0	31	1.05
290684--290739	26	2.2	25	83	6	67	37	0	8	53	1.32
290697--290763	26	2.6	27	79	9	68	38	2	11	46	1.56
292658--292703	6	7.7	6	100	0	92	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
297081--297143	28	2.2	28	75	5	65	57	3	12	26	1.51
303542--303720	97	1.8	97	79	4	209	50	7	23	18	1.71
303921--303945	13	1.9	13	100	0	50	24	4	0	72	1.02
307699--307773	17	4.4	17	71	8	53	50	1	1	46	1.18
307909--307962	23	2.4	23	82	14	60	35	1	1	61	1.18
309809--309844	2	18.5	2	94	5	65	50	0	0	50	1.00
314202--314234	2	16.5	2	100	0	66	48	0	0	51	1.00
320239--320283	15	3.1	15	80	6	56	55	4	0	40	1.20
320239--320277	14	2.7	15	84	8	53	53	2	0	43	1.14
320370--320422	27	1.9	28	82	17	67	43	5	0	50	1.25
325194--325222	2	15.0	2	92	7	51	51	0	48	0	1.00
327679--327722	19	2.2	20	88	4	63	6	27	6	59	1.49
334629--334662	18	1.9	17	88	5	50	52	11	17	17	1.73
339058--339218	81	2.0	82	88	3	245	32	16	12	37	1.86
342356--342380	12	2.1	12	100	0	50	40	0	0	60	0.97
346629--346676	18	2.6	18	83	3	60	27	8	14	50	1.71
346801--346829	4	7.2	4	100	0	58	0	24	0	75	0.80
349366--349449	28	2.9	29	82	7	98	48	0	2	48	1.14
350557--350646	31	2.9	30	80	11	94	47	2	1	48	1.21
352175--352216	13	3.3	12	87	9	57	76	0	23	0	0.79
352174--352215	21	2.2	18	87	12	57	78	0	21	0	0.75
352799--352834	18	1.9	18	88	5	54	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
353017--353053	12	3.2	12	88	11	51	54	16	0	29	1.43
359697--359729	3	11.0	3	100	0	66	33	33	0	33	1.58
371915--371990	12	6.4	12	70	22	54	34	0	0	65	0.93
371909--371993	35	2.2	38	74	23	88	38	0	0	61	0.96
371930--371991	25	2.4	25	80	17	74	35	0	0	64	0.94
371921--371988	35	1.9	37	88	8	106	32	0	0	67	0.91
371918--372023	41	2.6	39	73	14	97	37	0	0	62	0.96
371966--372039	33	2.1	35	87	7	107	43	0	0	56	0.99
377238--377276	15	2.4	16	87	8	53	58	0	0	41	0.98
391126--391154	2	14.5	2	100	0	58	48	0	0	51	1.00
397042--397207	81	2.0	82	90	2	262	21	24	8	45	1.80
400831--400926	21	4.5	21	82	7	95	35	14	18	31	1.91
410804--410833	2	15.0	2	100	0	60	50	0	0	50	1.00
419522--419546	2	12.5	2	100	0	50	52	0	0	48	1.00
421334--421420	43	2.0	43	95	0	156	26	16	21	35	1.94
425082--425110	6	5.0	6	95	4	51	68	17	13	0	1.20
426059--426086	8	3.5	8	100	0	56	64	0	0	35	0.94
437332--437368	3	12.3	3	100	0	74	32	0	0	67	0.91
438078--438148	30	2.4	29	76	4	79	50	2	5	40	1.40
459738--459777	19	2.0	20	85	4	55	52	10	5	32	1.56
460160--460214	19	2.8	19	78	8	58	45	0	1	52	1.11
465192--465226	6	5.8	6	100	0	70	48	17	0	34	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
466966--467046	24	3.4	24	73	23	73	44	24	19	11	1.83
470975--471040	34	1.9	34	85	11	91	46	10	15	27	1.78
471345--471544	62	3.2	61	69	11	147	35	13	13	38	1.84
471303--471537	122	1.9	122	85	3	321	34	12	14	37	1.85
471304--471566	122	2.2	122	81	4	316	34	12	14	38	1.83
473286--473368	28	3.0	28	80	1	87	24	28	20	26	1.99
473320--473371	27	1.9	27	84	7	70	30	28	17	23	1.97
474813--474853	12	3.3	12	89	3	64	48	2	0	48	1.14
474984--475035	14	3.7	14	86	0	68	55	25	0	19	1.43
474941--475095	28	5.4	28	74	3	121	49	32	1	17	1.55
474941--475174	29	8.3	29	69	13	123	48	30	2	18	1.60
475071--475119	21	2.3	20	96	0	71	51	28	0	20	1.48
474980--475097	59	2.0	58	90	1	182	47	34	1	16	1.56
475004--475250	80	3.2	79	80	9	301	46	32	2	17	1.62
475154--475188	14	2.5	14	90	0	52	54	25	0	20	1.45
475165--475399	30	8.0	29	74	7	170	47	32	2	17	1.60
475091--475247	73	2.2	72	83	5	199	47	31	3	18	1.64
475209--475263	16	3.7	15	78	14	60	47	34	0	18	1.49
475165--475405	59	4.1	58	75	9	191	47	32	2	17	1.61
475163--475405	89	2.7	88	78	7	215	47	32	2	18	1.62
475372--475430	21	2.8	19	76	16	55	52	33	1	11	1.48
475411--475441	15	2.1	15	93	0	53	51	38	0	9	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
476866--476921	29	1.9	29	85	7	78	53	5	10	30	1.58
489901--489943	20	2.2	19	84	12	52	62	2	0	34	1.08
494088--494175	46	1.9	46	83	4	115	59	4	7	28	1.46
498400--498427	7	4.0	7	100	0	56	28	0	0	71	0.86
509768--509809	10	4.2	10	87	6	50	64	16	0	19	1.30
510517--510545	2	14.5	2	100	0	58	51	0	48	0	1.00
513142--513221	42	1.9	42	89	0	124	33	15	12	38	1.84
518107--518147	20	2.0	22	85	9	59	36	4	0	58	1.20
520874--520917	23	1.9	23	85	0	61	63	4	4	27	1.33
524940--524981	15	2.7	15	88	3	57	45	0	0	54	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133