genome.fa.s645.2.7.7.80.10.50.1000.33.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  33  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7501664--7501751	33	2.6	34	85	5	115	52	2	2	43	1.26
7501657--7501754	51	1.9	51	85	4	135	54	2	2	41	1.23
7501652--7501763	51	2.2	50	78	7	127	57	1	2	38	1.24
7501807--7501883	16	4.9	16	70	12	52	46	0	2	50	1.15
7501825--7501888	16	3.9	17	78	10	62	45	0	1	53	1.10
7504082--7504141	26	2.3	26	80	8	68	18	0	33	48	1.48
7504078--7504127	20	2.5	21	78	18	54	18	0	32	50	1.47
7508990--7509042	22	2.5	20	82	14	63	60	0	5	33	1.20
7508993--7509042	21	2.3	21	82	6	64	64	0	6	30	1.18
7510482--7510566	8	11.6	7	78	15	66	78	2	2	16	0.95
7510902--7510940	19	2.0	20	95	5	71	43	20	5	30	1.73
7511994--7512157	66	2.5	66	87	0	229	48	12	20	18	1.80
7512890--7513048	82	1.9	82	81	0	192	40	13	14	32	1.84
7518572--7518649	15	5.3	15	72	18	56	74	1	2	21	1.01
7518588--7518659	21	3.2	23	78	9	76	76	1	2	19	0.99
7518572--7518658	44	1.9	46	84	9	117	74	1	3	20	1.03
7518586--7518661	31	2.4	32	78	21	81	77	1	2	18	0.95
7519484--7519564	5	15.8	5	73	15	51	55	3	3	37	1.35
7524430--7524576	16	8.9	16	68	21	83	27	1	3	67	1.15
7524427--7524502	30	2.5	30	78	15	86	25	1	2	71	1.07
7524430--7524617	4	45.5	4	66	18	66	25	2	3	68	1.17
7524521--7524563	17	2.3	19	84	11	54	32	2	2	62	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7525178--7525219	20	2.1	20	86	0	57	42	28	16	11	1.84
7525554--7525627	23	3.1	23	74	14	62	14	2	5	77	1.07
7525636--7525711	11	7.7	10	78	15	52	14	5	1	78	0.98
7525635--7525716	6	13.7	6	74	13	62	14	4	1	79	0.96
7525592--7525716	28	4.5	27	75	16	80	17	4	2	76	1.06
7525592--7525721	17	8.2	16	69	19	62	17	4	2	75	1.08
7525726--7526134	118	3.5	117	88	5	587	45	9	11	33	1.72
7525726--7526134	58	6.9	60	84	8	513	45	9	11	33	1.72
7530004--7530039	16	2.4	15	86	13	56	77	0	13	8	0.98
7530014--7530048	19	1.9	18	88	11	54	77	0	14	8	0.99
7531324--7531659	41	8.1	41	89	4	475	23	16	22	37	1.94
7531324--7531659	124	2.7	123	90	2	514	23	16	22	37	1.94
7531324--7531659	165	2.0	165	91	3	543	23	16	22	37	1.94
7531666--7531741	1	76.0	1	76	0	71	88	10	0	1	0.58
7531666--7531741	19	4.2	18	83	8	91	88	10	0	1	0.58
7531666--7531741	27	2.9	27	88	5	111	88	10	0	1	0.58
7531666--7531741	9	8.4	9	85	5	100	88	10	0	1	0.58
7531913--7531944	17	1.9	16	93	6	55	0	18	0	81	0.70
7531913--7531954	17	2.5	17	85	11	52	2	14	2	80	0.90
7531901--7531956	22	2.6	21	77	5	67	8	10	3	76	1.12
7531966--7532085	21	5.5	21	68	25	63	29	1	3	65	1.18
7532036--7532078	17	2.3	19	84	11	54	32	2	2	62	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7533024--7533049	5	5.2	5	100	0	52	19	38	42	0	1.51
7533069--7533224	11	13.4	11	69	12	80	17	3	2	76	1.04
7533147--7533219	6	12.3	6	76	13	71	16	2	1	79	0.92
7533133--7533219	17	5.4	16	77	11	79	18	3	1	77	0.98
7533095--7533223	17	7.2	17	68	24	63	19	2	3	75	1.05
7533155--7533225	14	5.3	13	76	20	67	18	1	1	78	0.89
7533237--7533648	58	7.0	58	84	6	519	46	8	11	34	1.69
7533239--7533648	115	3.5	117	87	6	550	46	8	11	34	1.69
7536830--7536871	22	1.9	22	90	0	66	28	19	16	35	1.93
7536878--7536927	22	2.2	22	85	3	64	40	22	8	30	1.82
7536890--7536950	22	2.8	22	85	9	72	39	19	9	31	1.84
7538968--7539023	12	4.6	12	72	10	51	1	16	0	82	0.76
7538963--7539013	26	2.0	26	84	7	68	1	21	0	76	0.88
7539319--7539373	25	2.3	23	75	12	56	14	16	1	67	1.32
7541688--7541717	2	15.0	2	100	0	60	50	0	0	50	1.00
7541997--7542117	62	2.0	62	80	6	138	38	9	8	43	1.68
7542077--7542315	127	1.9	127	85	5	331	35	7	12	44	1.71
7543530--7543606	20	3.8	21	74	17	72	55	11	1	31	1.44
7543532--7543625	41	2.3	41	89	3	138	54	11	2	31	1.48
7543552--7543667	19	5.9	19	76	7	99	54	10	3	31	1.51
7544860--7544915	16	3.5	16	73	14	53	21	8	14	55	1.66
7546093--7546138	13	3.7	13	85	5	60	43	0	6	50	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7546305--7546330	13	2.0	13	100	0	52	61	7	0	30	1.24
7554035--7554079	22	2.0	22	95	0	81	11	26	35	26	1.90
7554660--7554809	77	2.0	76	87	1	219	34	22	8	36	1.83
7558575--7558699	62	2.0	62	98	0	241	17	15	16	50	1.78
7565664--7565696	16	2.1	16	100	0	66	42	18	0	39	1.50
7574153--7574590	224	2.0	224	91	0	707	26	18	27	26	1.98
7581963--7582054	31	3.0	31	87	6	116	42	0	1	56	1.06
7582094--7582142	16	3.0	16	84	3	53	46	0	0	53	1.00
7582511--7582554	21	2.1	21	87	8	63	45	4	0	50	1.22
7582706--7582758	20	2.9	19	74	25	60	11	13	5	69	1.34
7584253--7584288	18	1.9	19	88	5	56	11	11	0	77	0.99
7585626--7585705	39	2.1	39	85	0	106	46	13	13	26	1.81
7588343--7588376	17	1.9	18	88	5	52	11	5	0	82	0.83
7592610--7592645	12	3.1	12	92	4	56	63	0	0	36	0.94
7592977--7593015	21	1.9	20	89	5	60	56	2	0	41	1.13
7592976--7593015	10	3.8	11	83	9	57	55	2	0	42	1.13
7609664--7609709	21	2.2	21	84	7	58	36	23	17	21	1.94
7612527--7612580	24	2.2	24	90	6	81	20	14	7	57	1.61
7612727--7612862	2	69.0	2	77	8	118	4	4	44	46	1.43
7612727--7612862	53	2.6	53	100	0	272	4	4	44	46	1.43
7625371--7625607	122	1.9	122	82	5	291	33	15	15	35	1.89
7625642--7625795	63	2.4	63	81	4	168	32	16	11	39	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7625674--7625795	63	1.9	63	86	1	172	33	13	12	40	1.83
7627503--7627769	55	4.7	56	77	9	231	37	9	8	44	1.67
7627503--7627758	114	2.3	112	79	5	284	36	9	8	44	1.69
7629182--7629330	40	3.7	40	77	2	154	43	17	13	25	1.85
7639158--7639203	23	2.0	23	86	0	65	21	26	23	28	1.99
7640421--7640551	55	2.3	56	80	8	149	34	7	7	50	1.59
7641767--7641800	18	1.9	17	88	5	50	73	0	8	17	1.08
7643413--7643462	21	2.4	22	83	6	68	52	10	4	34	1.54
7646303--7646343	20	2.0	21	86	13	59	60	2	2	34	1.23
7646312--7646373	19	3.2	20	77	11	58	64	3	0	32	1.09
7653541--7653588	24	2.0	24	88	8	71	20	0	6	72	1.05
7653549--7653587	20	2.0	20	90	10	62	23	0	5	71	1.05
7654719--7654753	2	17.5	2	93	0	61	48	0	0	51	1.00
7661229--7661258	15	2.0	15	93	0	51	43	0	0	56	0.99
7662329--7662385	19	2.9	20	92	5	98	50	7	0	42	1.29
7662559--7662601	21	2.0	21	82	8	52	51	4	0	44	1.22
7667277--7667457	89	2.0	89	97	0	344	17	31	11	40	1.84
7667809--7667856	25	1.9	26	91	8	82	52	2	2	43	1.24
7667949--7667999	6	8.3	6	76	20	52	50	3	0	45	1.20
7667947--7667995	25	2.0	25	92	8	82	48	6	0	44	1.27
7667952--7667996	14	3.7	12	86	13	65	46	4	0	48	1.22
7670410--7670448	15	2.5	16	83	4	53	20	2	10	66	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7671207--7671238	12	2.8	12	95	4	57	78	0	0	21	0.76
7675241--7675339	7	14.3	7	71	12	71	76	2	6	15	1.06
7675241--7675348	22	5.2	21	77	12	82	75	1	6	15	1.08
7675283--7675324	17	2.6	16	78	14	50	80	0	7	11	0.88
7675283--7675359	21	3.8	19	75	13	66	79	0	7	12	0.94
7676797--7677029	43	5.4	43	80	5	236	24	13	15	45	1.82
7676797--7677029	87	2.7	86	82	3	297	24	13	15	45	1.82
7676921--7677147	118	1.9	118	83	1	294	24	10	17	48	1.78
7677043--7677197	43	3.6	41	74	11	125	28	9	14	47	1.76
7678260--7678325	26	2.5	26	80	9	73	43	6	9	40	1.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133