genome.fa.s645.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  112  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21812454--21812623	91	1.9	92	94	1	306	30	20	19	30	1.97
21821052--21821088	2	18.5	2	94	0	65	51	0	0	48	1.00
21822526--21822609	40	2.1	40	97	0	159	41	17	14	26	1.88
21825770--21826206	202	2.2	202	80	8	480	41	15	16	26	1.88
21826111--21826532	212	2.0	209	87	4	607	34	13	18	33	1.89
21840998--21841038	2	20.5	2	94	0	73	51	0	2	46	1.14
21844523--21844685	36	4.4	36	70	9	119	39	9	10	40	1.73
21844535--21844685	78	1.9	77	83	1	194	37	9	10	42	1.72
21850305--21850337	15	2.1	16	88	5	50	51	0	3	45	1.16
21853147--21853212	30	2.2	30	81	5	80	34	19	4	40	1.72
21854753--21854784	14	2.3	14	100	0	64	59	0	0	40	0.97
21864952--21864976	13	1.9	13	100	0	50	44	16	8	32	1.76
21865440--21865475	18	2.0	18	89	10	56	69	0	0	30	0.89
21874345--21874391	16	2.9	16	74	22	53	34	0	0	65	0.93
21874638--21874675	18	2.1	18	95	0	67	55	5	2	36	1.37
21887882--21888043	86	1.9	85	80	3	191	27	19	17	36	1.94
21893975--21894077	32	3.0	32	76	9	80	51	2	1	43	1.27
21899794--21899854	32	1.9	32	100	0	122	42	3	18	36	1.66
21900849--21900892	22	2.0	22	90	4	70	56	0	0	43	0.99
21901849--21902041	54	3.6	54	77	0	188	23	25	29	21	1.99
21902023--21902269	51	4.8	51	86	2	289	33	16	34	15	1.91
21906594--21906633	21	1.9	22	85	10	57	32	10	12	45	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21909835--21909875	20	2.0	20	86	9	57	65	0	0	34	0.93
21910665--21910692	3	9.3	3	100	0	56	67	0	0	32	0.91
21933178--21933212	10	3.4	10	92	4	52	22	2	0	74	0.95
21933198--21933236	18	2.2	18	90	0	60	23	7	0	69	1.14
21934631--21934695	24	2.8	21	72	20	58	60	0	6	33	1.22
21937632--21937908	152	1.8	153	84	7	388	43	3	3	49	1.36
21938921--21938973	4	13.5	4	76	4	54	26	0	5	67	1.12
21939035--21939069	15	2.2	16	90	5	54	57	0	2	40	1.14
21939114--21939200	40	2.1	42	81	12	101	40	0	4	55	1.21
21939689--21939727	11	3.4	11	89	7	51	48	0	0	51	1.00
21939870--21939915	23	2.0	23	83	12	58	47	0	2	50	1.13
21944499--21944524	2	13.0	2	100	0	52	50	0	0	50	1.00
21948612--21948670	22	2.7	21	76	10	57	52	3	0	44	1.17
21950246--21950340	42	2.3	42	85	3	120	36	11	10	41	1.76
21950691--21950739	18	2.6	19	77	3	55	44	0	4	51	1.20
21952043--21952094	20	2.5	20	87	3	77	53	0	0	46	1.00
21954045--21954107	14	4.4	14	75	18	58	47	0	0	52	1.00
21954045--21954108	30	2.2	28	86	5	83	46	0	0	53	1.00
21962591--21962624	13	2.5	13	85	4	50	38	0	11	50	1.39
21962694--21962736	3	14.7	3	95	4	79	65	0	0	34	0.93
21971639--21971670	13	2.5	13	95	5	57	37	0	0	62	0.95
21971629--21971678	22	2.3	22	78	21	61	34	0	4	62	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21971686--21971734	25	1.9	26	84	12	66	18	6	6	69	1.31
21972210--21972256	19	2.5	19	86	6	60	21	8	21	48	1.76
21972806--21972864	25	2.4	23	78	21	59	40	0	6	52	1.28
21973263--21973297	14	2.5	14	90	0	52	74	8	0	17	1.06
21985177--21985263	33	2.6	33	83	5	104	36	6	2	54	1.40
21986442--21986491	21	2.4	21	83	12	75	52	6	6	36	1.51
21991345--21991406	22	2.8	21	79	15	70	56	0	3	40	1.15
21991355--21991409	24	2.4	22	93	6	92	56	0	1	41	1.10
21998546--21998586	21	1.9	22	85	5	57	65	2	0	31	1.05
22000178--22000265	44	2.0	44	97	0	167	36	23	4	35	1.76
22004941--22004987	22	2.1	22	96	0	85	65	10	0	23	1.23
22005677--22005716	20	2.0	20	90	0	62	52	12	12	22	1.72
22009071--22009098	13	2.2	13	100	0	56	21	0	0	78	0.75
22011735--22011813	40	2.0	40	82	7	99	34	10	18	36	1.85
22023934--22024000	24	2.8	25	76	15	77	44	7	5	41	1.57
22030719--22030745	2	13.5	2	100	0	54	48	0	51	0	1.00
22035913--22035962	25	2.1	24	82	17	61	40	14	14	32	1.85
22035882--22036298	208	2.0	208	92	0	701	36	12	13	37	1.83
22036938--22036995	12	4.8	12	80	6	64	72	8	1	17	1.18
22036938--22036977	4	10.0	4	83	0	53	72	7	0	20	1.08
22038740--22038774	17	2.1	17	88	0	52	42	14	8	34	1.76
22047898--22047932	18	1.9	18	88	11	54	5	8	2	82	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22048303--22048352	19	2.6	19	75	12	66	56	10	2	32	1.44
22048378--22048426	19	2.6	19	80	0	62	46	6	10	36	1.63
22048416--22048473	29	2.0	29	86	6	82	46	1	1	50	1.22
22053410--22053465	25	2.2	25	78	12	62	44	5	0	50	1.25
22053956--22053987	16	2.0	16	93	0	55	37	21	12	28	1.90
22054320--22054361	21	2.0	21	90	4	68	40	7	9	42	1.65
22060365--22060412	15	3.5	13	75	13	51	64	0	4	31	1.12
22060495--22060541	23	2.0	23	91	0	76	36	19	25	19	1.95
22061281--22061330	24	2.1	24	92	0	82	64	6	14	16	1.48
22062165--22062218	24	2.2	24	86	0	72	31	0	18	50	1.48
22062345--22062404	11	5.2	11	75	16	50	61	0	3	35	1.12
22062354--22062408	15	3.5	15	76	16	58	61	0	1	36	1.06
22062348--22062400	26	2.0	27	96	3	99	62	0	3	33	1.13
22062952--22063009	16	3.7	16	74	14	50	63	1	0	34	1.04
22062929--22063000	30	2.4	30	76	2	74	58	1	0	40	1.07
22062981--22063022	21	1.9	23	85	9	61	69	0	0	30	0.89
22063253--22063292	20	2.0	21	90	5	64	50	0	0	50	1.00
22071572--22071606	17	2.1	17	94	0	61	48	17	8	25	1.75
22087524--22087576	26	2.0	26	88	0	79	22	16	18	41	1.90
22087608--22087686	31	2.5	31	78	17	83	53	5	26	15	1.62
22088962--22089037	20	3.8	20	68	22	61	11	1	64	22	1.34
22089526--22089574	25	1.9	26	91	4	82	46	2	10	40	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22096489--22096519	1	31.0	1	100	0	62	0	0	0	100	0.00
22099117--22099625	253	2.0	253	94	0	885	38	15	17	28	1.90
22099977--22100087	55	2.0	55	100	0	222	44	18	10	27	1.82
22105233--22105326	21	4.5	21	82	5	93	48	7	3	40	1.47
22105254--22105326	11	7.0	11	69	20	50	49	6	2	41	1.44
22106388--22106433	19	2.6	17	83	12	58	30	4	4	60	1.35
22107247--22107313	32	2.1	31	83	2	80	49	0	1	49	1.10
22107278--22107325	12	4.0	13	79	17	50	50	0	0	50	1.00
22107270--22107381	30	3.7	32	74	15	87	46	0	1	51	1.11
22107342--22107390	21	2.3	22	89	3	73	40	0	0	59	0.98
22108246--22108292	6	7.5	6	77	17	51	31	2	2	63	1.18
22108246--22108283	13	2.8	13	92	4	58	31	2	0	65	1.06
22110562--22110656	50	1.9	50	91	0	154	34	14	23	27	1.94
22115138--22115303	41	3.8	45	73	17	161	69	1	9	19	1.25
22115126--22115309	89	2.1	89	95	0	332	69	1	8	21	1.24
22115254--22115314	30	2.0	30	87	6	86	73	3	6	16	1.17
22115269--22115321	25	2.1	25	86	6	72	75	3	7	13	1.15
22115181--22115314	5	24.8	5	69	20	67	71	2	7	18	1.20
22115280--22115323	19	2.4	19	82	14	56	72	4	9	13	1.24
22116405--22116566	64	2.5	64	81	7	159	41	6	24	27	1.78
22116421--22116960	65	8.3	64	69	11	215	41	9	23	25	1.84
22118015--22118049	16	2.2	16	95	5	63	71	5	0	22	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22118907--22118949	3	14.3	3	100	0	86	67	0	0	32	0.91
22121276--22121337	25	2.4	26	76	13	65	40	4	0	54	1.22
22123533--22127866	375	11.6	373	88	3	6476	35	10	15	39	1.82
22123533--22127866	749	5.8	749	96	1	7758	35	10	15	39	1.82
22130473--22131516	375	2.8	367	89	3	1536	35	10	14	39	1.81
22131488--22131589	50	2.0	50	92	0	168	36	15	17	30	1.91
22132106--22132152	20	2.3	20	82	10	60	70	4	10	14	1.31
22133996--22134311	65	4.9	62	76	12	268	43	12	22	22	1.86
22133995--22134302	128	2.4	127	82	9	365	43	12	22	22	1.86
22135580--22135825	68	3.8	64	71	15	200	43	10	22	22	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133