genome.fa.s645.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  102  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19992849--19992941	6	15.0	6	84	6	123	1	17	34	47	1.55
19995884--19995952	19	3.6	19	76	23	74	21	11	15	50	1.76
19995879--19995952	38	1.9	38	86	10	107	21	10	16	51	1.74
19996758--19996938	89	2.0	91	86	2	258	27	11	14	46	1.78
19997523--19997573	17	3.0	17	97	0	93	17	35	19	27	1.94
20001237--20001309	28	2.7	27	81	12	87	49	1	0	49	1.09
20002555--20002592	19	2.0	20	84	5	51	13	7	0	78	0.94
20002972--20003003	13	2.5	13	94	0	55	12	0	3	84	0.74
20002977--20003043	34	2.0	33	88	2	98	28	0	5	65	1.16
20003668--20003706	17	2.3	17	86	8	53	53	5	20	20	1.64
20006171--20006211	21	1.9	22	85	5	57	43	7	4	43	1.53
20014533--20014566	17	2.0	17	100	0	68	23	0	29	47	1.52
20019297--20019326	15	2.0	15	93	0	51	53	3	0	43	1.17
20022424--20022516	46	2.1	42	79	15	100	40	4	1	53	1.27
20025728--20025758	3	10.3	3	100	0	62	35	0	0	64	0.94
20030491--20030525	18	1.9	18	88	11	54	68	14	0	17	1.21
20032620--20032700	35	2.3	35	77	6	92	11	1	17	70	1.22
20037747--20037826	34	2.4	34	85	8	117	43	8	5	42	1.57
20041115--20041190	32	2.3	32	82	10	93	43	9	14	32	1.77
20041627--20041686	28	2.3	25	78	13	75	26	3	3	66	1.23
20046320--20046363	21	2.1	21	84	12	56	56	11	4	27	1.53
20046474--20047082	326	1.9	319	83	7	784	28	14	13	44	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20051360--20051503	73	2.0	73	95	0	261	38	15	14	30	1.88
20057290--20057320	4	7.8	4	100	0	62	74	0	0	25	0.82
20059522--20059754	117	2.0	116	89	4	353	47	6	10	36	1.62
20059522--20059754	58	4.0	58	88	2	333	47	6	10	36	1.62
20061297--20061340	18	2.4	18	88	0	61	36	20	13	29	1.91
20063242--20063290	14	3.5	14	82	0	62	81	2	8	8	0.94
20064810--20064862	21	2.5	22	84	3	72	32	11	16	39	1.85
20065192--20065856	42	15.4	42	71	14	356	23	14	19	42	1.88
20065192--20065898	43	16.4	42	71	10	358	23	14	19	42	1.87
20065222--20065488	139	1.9	139	96	1	500	23	13	21	41	1.88
20065362--20065904	85	6.4	85	86	2	657	23	14	18	43	1.87
20065351--20065843	128	3.9	126	77	6	431	23	14	19	42	1.88
20071730--20071790	29	2.2	28	82	5	70	47	1	6	44	1.39
20073001--20073122	62	2.0	62	91	0	199	25	13	16	44	1.85
20079181--20079349	93	1.9	89	86	6	241	14	13	9	63	1.52
20084346--20084374	13	2.2	13	100	0	58	51	6	13	27	1.66
20088344--20088564	60	3.7	60	82	3	264	32	13	7	47	1.70
20088339--20088578	120	2.0	119	85	7	326	33	13	7	45	1.71
20088482--20088655	91	1.9	92	82	8	221	34	13	5	46	1.67
20090472--20090507	15	2.5	14	90	4	54	11	2	0	86	0.68
20090555--20090823	85	3.2	83	87	4	376	46	16	13	23	1.82
20090554--20090823	43	6.4	42	90	3	375	46	16	13	23	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20090511--20090825	128	2.5	128	86	3	422	46	15	13	24	1.81
20091108--20091145	20	1.9	20	88	0	58	31	21	13	34	1.91
20091215--20091265	23	2.3	23	80	6	61	43	15	3	37	1.66
20092246--20092295	16	3.3	15	86	10	66	12	18	0	70	1.17
20092262--20092397	8	16.8	8	80	17	113	8	13	0	77	0.99
20092262--20092396	17	7.7	18	79	11	106	8	14	0	77	0.97
20092277--20092387	47	2.5	43	81	12	120	7	11	0	81	0.88
20096463--20096832	122	3.0	121	78	13	325	34	13	5	46	1.66
20096543--20096836	122	2.4	123	82	7	338	35	12	5	47	1.64
20096560--20096836	60	4.6	60	79	9	287	36	11	5	46	1.64
20096553--20096838	61	4.7	60	76	13	264	35	12	5	46	1.65
20097986--20098021	10	3.6	10	88	0	54	52	11	27	8	1.65
20105769--20105823	27	2.0	29	86	13	80	23	14	25	36	1.93
20106463--20106545	41	2.0	40	84	6	105	42	10	12	34	1.77
20108491--20108699	104	2.0	104	92	5	352	41	7	4	45	1.54
20111124--20111156	17	1.9	17	88	11	50	18	15	6	60	1.54
20112326--20112583	129	2.0	130	88	3	387	40	11	6	41	1.68
20112500--20112740	117	2.1	117	80	6	265	45	8	4	41	1.54
20114471--20114578	34	3.1	34	72	20	107	47	12	13	25	1.79
20116375--20116407	17	2.0	17	94	5	59	72	6	0	21	1.05
20116345--20116419	18	4.2	18	74	17	66	70	4	4	21	1.20
20117225--20117323	3	35.3	3	71	20	81	60	2	2	35	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20117225--20117323	13	7.1	15	70	21	81	60	2	2	35	1.20
20117225--20117320	18	5.6	17	75	13	90	60	2	2	35	1.20
20117229--20117320	10	8.6	10	71	17	53	59	2	2	35	1.21
20119065--20119117	9	5.8	9	89	10	81	11	11	0	77	1.00
20123796--20123886	45	2.0	43	81	10	103	36	5	12	46	1.64
20124378--20124418	20	2.1	20	86	4	57	21	24	4	48	1.69
20124872--20124934	3	21.3	3	96	3	119	66	0	0	33	0.92
20138265--20138311	25	1.9	24	95	4	85	34	2	0	63	1.06
20139127--20139263	22	6.1	22	69	17	68	40	1	7	50	1.39
20139183--20139256	11	6.5	11	71	20	53	39	2	6	51	1.43
20139326--20139363	16	2.4	16	83	12	51	26	0	0	73	0.83
20139328--20139363	17	2.2	17	90	5	56	25	0	0	75	0.81
20143753--20143842	32	2.8	31	80	8	83	42	1	7	48	1.39
20143767--20143811	21	2.1	22	88	8	67	44	0	8	46	1.34
20143694--20143917	111	2.0	112	83	6	285	40	5	6	47	1.53
20145380--20145404	6	4.2	6	100	0	50	84	0	0	16	0.63
20146047--20146095	23	2.1	24	82	17	59	46	0	2	51	1.12
20147158--20147193	16	2.2	16	100	0	72	33	11	16	38	1.84
20148145--20148171	2	13.5	2	100	0	54	51	0	0	48	1.00
20148802--20148834	2	17.0	2	93	6	59	48	0	0	51	1.00
20149266--20149321	2	28.0	2	85	0	76	51	3	0	44	1.18
20150401--20150434	12	2.8	12	95	0	59	47	26	2	23	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20153836--20153883	22	2.1	23	84	3	62	33	4	6	56	1.44
20161534--20161569	16	2.2	16	100	0	72	25	0	11	63	1.27
20161804--20161844	17	2.5	17	82	17	52	41	2	0	56	1.13
20162847--20162915	18	3.6	18	75	17	66	52	2	2	42	1.31
20162847--20163057	41	5.3	40	70	18	147	54	2	1	41	1.24
20162919--20162994	33	2.3	33	82	13	86	56	0	1	42	1.07
20162864--20163060	18	12.0	17	66	21	84	55	2	1	41	1.20
20162989--20163062	26	2.9	26	75	18	75	54	4	0	41	1.19
20163093--20163180	19	4.9	18	73	17	76	47	1	0	51	1.08
20163152--20163221	9	8.2	9	73	17	60	50	1	0	48	1.09
20163149--20163213	16	4.5	16	71	23	63	49	1	0	49	1.10
20163152--20163221	26	2.8	25	87	10	99	50	1	0	48	1.09
20165917--20165946	14	2.1	14	100	0	60	50	43	0	6	1.28
20168702--20168776	17	4.4	17	68	23	50	50	2	4	42	1.35
20169652--20169689	20	1.9	20	88	0	58	34	0	7	57	1.28
20169720--20169758	19	2.1	19	85	9	53	35	0	0	64	0.94
20171766--20171801	16	2.3	15	95	4	63	63	0	0	36	0.94
20171773--20171822	16	3.0	16	85	5	55	66	0	4	30	1.10
20171852--20171916	26	2.5	26	82	7	69	61	4	3	30	1.31
20172002--20172056	24	2.5	22	80	16	60	47	0	3	49	1.19
20174788--20174838	14	3.4	14	75	15	57	17	9	19	52	1.72
20174781--20174842	31	2.0	31	100	0	124	19	9	22	48	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20176412--20176481	3	24.0	3	88	5	108	68	0	0	31	0.90
20180101--20180142	22	2.0	22	90	4	68	69	0	11	19	1.19
20182742--20182786	16	2.8	16	89	3	63	33	13	4	48	1.62
20183023--20183085	23	3.0	22	70	25	55	50	0	0	49	1.00
20183265--20183320	25	2.3	25	84	9	71	44	3	14	37	1.62
20186669--20186958	87	3.4	86	77	4	262	42	16	10	31	1.81
20186666--20186955	43	6.7	42	72	13	150	42	16	9	31	1.80
20187029--20187234	42	4.8	44	74	8	149	40	14	15	29	1.87
20187120--20187234	43	2.7	43	82	8	135	41	13	15	29	1.85
20187233--20187390	44	3.6	45	80	8	180	41	15	12	31	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133