genome.fa.s645.2.7.7.80.10.50.1000.88.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  88  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17492451--17492513	2	33.0	2	75	15	53	46	3	0	50	1.17
17492460--17492521	30	2.1	30	87	6	90	45	4	0	50	1.23
17495194--17495441	55	4.6	55	72	14	169	30	16	10	42	1.82
17495210--17495322	56	2.1	53	83	8	138	31	17	7	43	1.76
17501753--17501892	62	2.2	62	80	6	149	35	12	11	40	1.80
17502020--17502151	64	2.1	64	84	2	169	40	13	6	39	1.71
17502020--17502161	62	2.2	64	82	2	171	40	13	6	39	1.70
17502696--17502825	65	2.0	65	95	0	233	20	20	9	49	1.76
17506425--17506661	63	3.8	62	73	13	209	36	13	17	32	1.89
17506300--17506691	185	2.1	189	82	6	496	36	13	16	33	1.88
17507409--17507463	2	26.5	2	78	7	56	41	1	5	50	1.36
17509208--17509279	29	2.5	29	83	0	99	33	9	5	51	1.58
17511197--17511225	2	14.5	2	100	0	58	51	0	0	48	1.00
17512117--17512184	32	2.1	32	94	0	118	54	2	5	36	1.40
17513311--17513340	4	7.5	4	92	0	51	26	0	3	70	1.03
17513311--17513347	12	3.1	12	92	0	56	24	2	5	67	1.25
17522478--17522551	39	1.9	38	83	8	96	29	9	17	43	1.81
17529759--17529800	5	8.4	5	80	19	52	76	2	0	21	0.90
17529759--17529800	11	4.2	10	85	14	52	76	2	0	21	0.90
17530311--17530344	16	2.1	16	88	0	50	14	5	2	76	1.09
17530361--17530394	7	5.0	7	92	7	52	73	2	0	23	0.97
17530361--17530394	13	2.5	13	90	4	50	73	2	0	23	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17531759--17531889	65	2.1	62	83	9	158	59	3	1	35	1.22
17532014--17532059	18	2.4	18	82	7	56	58	4	0	36	1.18
17532014--17532057	20	2.3	20	84	7	56	61	4	0	34	1.16
17532006--17532086	31	2.7	30	78	17	80	60	2	1	35	1.18
17532042--17532085	23	2.0	22	87	12	65	59	2	2	36	1.23
17532148--17532267	28	4.3	28	75	16	97	28	0	5	65	1.22
17532166--17532208	9	4.7	9	91	5	68	18	0	11	69	1.17
17532166--17532208	19	2.3	19	92	4	70	18	0	11	69	1.17
17532161--17532265	9	11.2	9	69	8	57	25	0	6	66	1.22
17532070--17532265	27	7.1	28	66	13	86	29	1	5	63	1.26
17532244--17532316	28	2.6	28	75	0	74	35	2	2	58	1.26
17532347--17532404	22	2.6	21	86	10	71	29	1	6	62	1.31
17532233--17532383	19	7.8	19	67	14	78	36	1	3	57	1.29
17532298--17532384	10	8.5	10	76	8	77	35	1	4	58	1.26
17532347--17532392	11	4.2	11	78	15	51	26	0	8	65	1.21
17533935--17533979	21	2.1	21	92	8	74	35	4	0	60	1.17
17535671--17535752	13	6.3	13	83	5	85	58	9	1	30	1.38
17535655--17535752	26	3.9	25	80	6	101	57	11	1	30	1.41
17535671--17535752	39	2.1	39	84	4	103	58	9	1	30	1.38
17537065--17537443	43	8.8	43	76	4	264	45	13	9	30	1.76
17537068--17537310	44	5.6	43	80	6	174	48	13	9	28	1.74
17537069--17537310	87	2.8	87	81	3	213	48	13	9	28	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17537534--17537723	32	5.9	32	71	6	116	44	7	18	28	1.78
17537648--17537825	94	1.9	92	80	6	207	44	12	18	24	1.84
17537750--17537861	32	3.5	31	77	7	100	45	16	15	23	1.84
17537647--17537944	125	2.4	123	77	8	296	46	12	16	23	1.82
17537900--17538108	33	6.4	32	74	10	133	50	8	14	26	1.70
17537965--17538164	97	2.1	98	82	6	237	51	6	15	27	1.67
17537965--17538198	98	2.4	99	79	10	239	51	6	14	27	1.67
17539404--17539611	111	1.9	110	83	3	274	40	9	14	35	1.79
17543441--17543507	13	5.2	13	80	8	66	58	7	5	28	1.49
17544124--17544179	25	2.2	25	81	9	69	62	12	5	19	1.49
17544863--17544901	20	2.0	20	84	0	51	33	7	10	48	1.66
17547557--17547606	10	5.1	10	78	9	50	26	0	0	74	0.83
17547566--17547609	17	2.6	17	78	7	54	22	0	0	77	0.77
17547561--17547618	22	2.5	23	78	13	66	27	0	0	72	0.85
17561219--17561253	2	18.0	2	94	5	63	48	0	0	51	1.00
17573860--17573907	23	2.0	24	96	4	89	27	14	20	37	1.92
17582280--17582308	14	2.0	15	93	6	51	41	3	0	55	1.17
17582302--17582354	24	2.5	20	80	17	61	50	0	0	49	1.00
17582252--17582586	166	2.0	165	81	7	385	47	4	6	41	1.49
17583101--17583134	15	2.2	16	89	5	52	50	5	0	44	1.26
17583202--17583226	11	2.3	11	100	0	50	56	0	16	28	1.41
17592726--17592816	4	23.2	4	70	16	57	71	0	0	28	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17592725--17592820	28	3.3	29	81	11	101	71	0	0	28	0.86
17592747--17592818	23	3.0	24	76	15	76	73	0	0	26	0.83
17592748--17592852	10	10.6	9	74	19	61	70	0	0	27	1.00
17594544--17594583	13	2.8	15	81	14	57	72	0	5	22	1.04
17596577--17596618	12	3.8	11	80	20	52	83	4	9	2	0.88
17596577--17596621	23	2.0	23	82	8	56	80	4	13	2	0.97
17597980--17598039	4	15.0	4	86	6	77	25	28	1	45	1.63
17598001--17598052	24	2.2	24	100	0	104	25	32	0	42	1.55
17600483--17600557	22	3.4	22	83	5	80	82	5	4	8	0.93
17600492--17600538	17	2.8	17	84	9	53	80	4	2	12	0.94
17600506--17600571	11	5.7	11	74	15	53	83	4	9	3	0.89
17601066--17601150	6	13.2	6	75	20	66	74	1	21	3	1.04
17601067--17601135	27	2.6	26	82	13	88	75	0	20	4	0.97
17607282--17607388	22	4.8	23	72	15	73	77	0	11	11	0.99
17607271--17607360	22	3.8	23	75	18	71	76	0	11	12	1.02
17607295--17607387	10	10.0	9	82	6	64	78	0	10	10	0.97
17607319--17607405	29	3.0	29	77	15	99	74	0	13	11	1.07
17607282--17607387	49	2.2	49	81	13	130	78	0	11	10	0.97
17607295--17607427	9	14.7	9	82	9	132	74	0	12	12	1.08
17608561--17608669	21	4.8	21	74	18	101	39	4	13	42	1.65
17608589--17608666	27	3.0	27	74	9	81	35	6	12	44	1.68
17608999--17609064	33	2.0	33	84	0	87	33	15	18	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17610410--17610458	23	2.0	24	84	7	64	16	4	6	73	1.19
17611396--17611430	16	2.2	16	90	5	54	77	5	8	8	1.13
17618780--17618902	35	3.4	35	82	3	147	35	13	13	38	1.83
17619151--17619340	82	2.3	83	83	3	240	30	13	17	38	1.88
17619337--17619561	100	2.3	96	83	4	263	23	12	20	43	1.86
17619515--17619591	34	2.3	33	82	6	93	20	15	20	42	1.88
17619615--17619660	24	2.0	23	86	4	65	17	13	23	45	1.83
17619448--17619693	133	1.9	132	83	4	325	21	13	22	42	1.88
17619539--17619898	99	3.6	100	84	3	442	22	12	22	42	1.87
17619314--17619792	232	2.1	229	83	3	615	23	13	20	42	1.87
17619875--17620037	74	2.2	75	84	5	197	27	15	19	36	1.93
17620528--17620593	25	2.6	26	88	7	91	80	9	3	7	1.00
17620539--17620589	19	2.7	19	82	8	59	82	7	3	5	0.94
17622955--17623012	22	2.6	22	77	0	62	34	20	18	25	1.96
17623179--17624000	33	25.5	32	71	8	249	34	18	16	30	1.93
17623202--17623397	64	3.0	62	76	10	164	34	20	17	28	1.95
17623760--17624003	65	3.8	65	75	4	183	33	18	17	30	1.94
17624168--17624222	16	3.5	15	82	9	56	78	3	9	9	1.08
17624172--17624205	11	2.9	12	82	8	52	76	0	14	8	1.01
17624172--17624240	23	3.1	22	82	10	63	78	4	8	8	1.09
17624161--17624280	19	6.3	18	70	17	73	78	7	5	9	1.09
17624657--17624731	27	2.7	28	82	12	100	74	2	0	22	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17624661--17624730	19	3.8	18	81	11	79	75	2	0	21	0.93
17624666--17624718	17	2.9	17	88	8	70	73	0	0	26	0.83
17624660--17624731	10	7.6	10	74	12	53	75	2	0	22	0.94
17624664--17624776	19	6.1	19	72	16	76	67	4	0	27	1.16
17628388--17628431	22	2.0	23	82	13	56	4	13	11	70	1.31
17628772--17629037	144	1.9	143	86	4	383	41	12	13	33	1.81
17628772--17629068	144	2.1	144	84	4	377	40	11	13	34	1.81
17630602--17630701	19	5.2	19	69	7	58	48	31	6	15	1.69
17630691--17630726	18	2.0	18	88	0	54	41	25	5	27	1.77
17633002--17633069	30	2.3	29	76	2	73	32	7	7	52	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133