genome.fa.s645.2.7.7.80.10.50.1000.89.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  89  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17633166--17633215	21	2.5	20	83	6	64	58	0	6	36	1.23
17649780--17649814	17	2.1	17	100	0	70	28	0	11	60	1.32
17652492--17652531	1	40.0	1	84	0	53	92	2	5	0	0.45
17652870--17652900	16	1.9	16	93	0	53	83	0	9	6	0.79
17654843--17655223	144	2.6	142	74	3	359	42	16	12	29	1.84
17655449--17655495	10	4.7	10	83	0	58	36	14	12	36	1.85
17656288--17656326	20	2.0	20	89	0	60	30	2	2	64	1.21
17657403--17657434	2	16.0	2	93	0	55	53	0	46	0	1.00
17657670--17657726	24	2.4	24	82	11	64	31	5	1	61	1.28
17658517--17658564	21	2.3	21	85	3	62	68	0	2	29	1.01
17658549--17658582	17	1.9	18	88	5	52	79	0	5	14	0.91
17661481--17661530	19	2.5	20	84	12	68	50	2	0	48	1.12
17661509--17661576	28	2.4	28	78	9	77	54	5	0	39	1.25
17666669--17666701	16	2.1	16	100	0	66	39	12	6	42	1.67
17678018--17678059	18	2.2	20	91	8	70	76	2	7	14	1.10
17678003--17678082	8	9.6	8	77	14	56	72	1	10	16	1.17
17677996--17678073	35	2.2	34	84	8	95	73	1	10	15	1.16
17678001--17678108	10	12.4	9	75	16	70	72	0	13	12	1.18
17678001--17678084	43	1.9	44	85	2	116	72	1	10	15	1.17
17678004--17678075	7	10.0	7	77	16	51	72	1	9	16	1.18
17678001--17678099	43	2.3	42	81	6	110	71	1	13	14	1.19
17678832--17678883	21	2.5	20	90	6	86	26	19	11	42	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17679089--17679133	23	2.0	23	81	0	54	42	2	13	42	1.56
17679275--17679357	14	6.3	14	68	13	68	38	6	13	42	1.69
17679275--17679357	27	3.1	27	77	6	91	38	6	13	42	1.69
17679671--17679735	17	3.9	17	72	8	53	33	24	12	29	1.92
17680218--17680259	3	14.0	3	100	0	84	66	0	0	33	0.92
17681143--17681179	12	3.2	12	82	17	51	10	0	13	75	1.04
17681146--17681188	23	1.9	22	90	4	68	13	0	6	79	0.93
17681238--17681283	24	1.9	23	82	8	56	67	4	0	28	1.10
17682314--17683033	65	11.2	64	69	10	229	34	18	15	31	1.93
17682490--17682558	29	2.4	29	92	0	102	21	30	18	28	1.97
17682314--17683105	33	24.5	33	72	9	251	34	18	15	31	1.92
17682759--17683105	32	10.8	32	71	11	174	36	15	15	32	1.89
17682831--17682948	62	1.9	62	83	0	155	33	20	17	27	1.95
17683387--17683463	29	2.5	31	84	12	97	70	1	1	27	1.03
17683387--17683457	13	5.4	14	74	15	62	69	1	1	28	1.06
17683388--17683451	10	6.4	10	81	15	71	68	1	1	28	1.07
17683509--17683552	18	2.4	18	82	10	54	65	0	2	31	1.05
17685269--17685326	15	3.7	15	75	8	53	68	0	1	29	0.99
17686824--17686865	2	21.5	2	92	4	68	47	2	0	50	1.14
17694302--17694331	15	1.9	16	93	6	53	80	0	0	20	0.72
17695152--17695291	3	52.0	3	69	20	96	59	2	2	35	1.24
17695150--17695291	8	17.0	8	74	17	105	59	2	2	35	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17695155--17695293	5	27.6	5	75	16	119	58	2	2	35	1.25
17695523--17695656	55	2.4	55	87	3	180	39	15	21	23	1.91
17697952--17697987	2	18.5	2	91	5	56	47	2	0	50	1.15
17700674--17700702	14	2.1	14	93	6	51	31	6	0	62	1.22
17705493--17705591	10	9.2	10	68	25	51	69	2	2	26	1.10
17705785--17705826	21	2.0	20	86	4	57	50	14	9	26	1.73
17706392--17706553	3	60.0	3	72	20	117	59	1	2	36	1.18
17706392--17706555	5	31.6	5	75	16	113	59	1	2	36	1.18
17706396--17706555	32	5.0	33	77	16	151	59	1	2	36	1.19
17707420--17707452	15	2.3	15	89	5	50	6	3	9	81	0.95
17710521--17710667	72	2.0	72	92	0	240	45	17	16	21	1.85
17713662--17713823	3	59.0	3	69	23	99	59	3	2	33	1.28
17713670--17713825	5	29.6	5	75	11	102	58	3	2	34	1.30
17713662--17713823	8	19.4	8	72	18	102	59	3	2	33	1.28
17715464--17715524	29	2.0	31	84	12	83	49	14	3	32	1.60
17715874--17715906	14	2.5	13	86	13	50	69	15	3	12	1.30
17719322--17719369	22	2.2	22	84	0	60	6	4	37	52	1.46
17719384--17719417	11	2.9	12	86	4	52	11	0	35	52	1.38
17719461--17719717	7	38.7	7	66	14	116	17	1	34	47	1.57
17719460--17719536	29	2.8	27	76	16	86	20	1	35	42	1.61
17719459--17719713	13	19.3	13	73	14	139	17	1	34	46	1.58
17719444--17719717	20	13.6	20	68	14	152	17	1	33	47	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17721352--17721417	32	2.1	31	81	13	73	28	3	1	66	1.15
17721550--17721582	14	2.4	14	94	0	57	24	0	0	75	0.80
17721545--17721579	18	2.0	17	94	5	61	22	0	0	77	0.78
17721636--17721687	21	2.5	20	81	9	61	57	1	0	40	1.10
17722435--17722539	45	2.4	45	85	3	142	43	17	9	29	1.80
17722640--17723010	49	7.4	48	75	11	298	40	18	11	29	1.85
17722650--17722762	59	1.9	59	87	3	165	37	18	10	33	1.85
17722709--17723010	144	2.1	148	85	5	400	42	17	10	29	1.83
17729343--17729371	14	2.1	14	93	6	51	31	6	0	62	1.22
17731561--17731594	13	2.6	13	86	13	52	67	0	8	23	1.18
17731562--17731593	12	2.6	12	95	5	55	65	0	9	25	1.22
17731561--17731597	12	2.8	14	80	16	51	64	0	8	27	1.21
17734078--17734108	16	1.9	16	93	0	53	6	9	3	80	0.99
17734160--17734258	10	9.2	10	71	22	51	69	2	2	26	1.10
17734191--17734265	28	2.7	28	72	13	75	69	1	2	26	1.10
17735055--17735236	3	67.0	3	70	21	116	59	2	2	35	1.24
17735055--17735238	5	35.6	5	75	13	126	59	2	2	35	1.24
17735059--17735236	60	3.1	58	79	13	172	58	2	2	35	1.25
17735679--17735807	55	2.4	54	74	8	127	37	16	22	24	1.94
17738910--17739053	72	2.0	72	88	0	216	45	14	18	22	1.85
17742012--17742091	8	9.1	8	75	15	52	62	2	2	32	1.22
17742018--17742142	3	45.0	3	70	23	87	60	3	2	33	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17742026--17742142	22	5.3	22	76	19	93	59	3	2	34	1.27
17742026--17742144	43	2.7	44	84	7	134	59	3	2	34	1.27
17742018--17742144	32	4.0	31	72	18	77	60	3	2	33	1.25
17742026--17742115	5	17.2	5	80	7	83	60	2	2	35	1.22
17743773--17743833	29	2.0	31	84	12	83	49	14	3	32	1.60
17747704--17747737	11	2.9	12	86	4	52	11	0	35	52	1.38
17747779--17747999	34	6.4	32	72	12	100	19	1	31	47	1.60
17747937--17748011	13	5.7	13	80	7	80	13	0	34	52	1.41
17747928--17748046	40	3.0	40	77	17	131	15	0	32	51	1.49
17747923--17748046	7	18.4	7	75	11	55	16	0	31	51	1.50
17749679--17749744	31	2.1	31	81	13	73	28	1	1	68	1.08
17749873--17749908	18	2.1	17	89	5	54	25	0	0	75	0.81
17749872--17749908	14	2.7	13	88	12	56	24	0	0	75	0.80
17750748--17750863	44	2.6	44	81	8	121	38	20	10	30	1.86
17751038--17751337	49	6.1	49	72	9	200	43	14	11	31	1.81
17751066--17751336	146	1.9	146	84	3	366	42	15	11	30	1.82
17752173--17752206	17	2.0	17	88	11	52	0	17	0	82	0.67
17760786--17761124	145	2.3	143	81	6	373	35	12	13	38	1.83
17768199--17768242	19	2.3	19	84	0	52	4	4	6	84	0.88
17770928--17770962	17	2.1	17	100	0	70	60	11	0	28	1.32
17771243--17771282	21	2.0	21	90	5	64	30	2	2	65	1.19
17772184--17772292	22	4.9	22	70	17	82	27	5	6	60	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17773524--17773565	17	2.5	17	88	7	59	80	0	4	14	0.86
17773816--17773848	16	2.0	17	94	5	59	12	6	0	81	0.85
17776115--17776178	31	2.1	31	96	0	119	40	17	10	31	1.84
17791112--17791156	17	2.8	17	90	6	67	77	0	2	20	0.87
17791145--17791219	7	10.0	7	83	16	89	70	0	16	13	1.16
17791111--17791237	8	15.9	8	76	16	95	71	0	12	15	1.14
17791113--17791219	31	3.5	30	83	7	117	71	0	11	16	1.13
17791137--17791226	23	3.9	22	82	15	101	71	0	14	14	1.16
17791113--17791217	15	6.8	15	79	14	97	73	0	10	16	1.09
17791867--17791899	12	2.8	12	95	4	59	36	0	15	48	1.45

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133