genome.fa.s645.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  6  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1325963--1326019	29	2.0	29	96	0	105	40	21	14	24	1.90
1330131--1330189	30	2.0	30	86	0	82	52	1	0	45	1.10
1331812--1331896	38	2.2	39	85	12	113	60	1	4	34	1.25
1331936--1332008	31	2.3	31	79	13	78	47	0	2	49	1.15
1333257--1333318	24	2.6	25	76	7	74	67	0	1	30	1.00
1333249--1333306	13	4.7	13	72	18	52	70	0	1	27	0.97
1333293--1333353	24	2.7	22	80	14	63	57	0	0	42	0.98
1333394--1333475	32	2.6	31	82	5	101	53	1	0	45	1.08
1333980--1334040	29	2.3	25	77	22	63	34	0	4	60	1.18
1334190--1334271	10	8.0	10	72	11	51	60	3	2	32	1.27
1334200--1334251	20	2.5	20	81	3	59	57	5	3	32	1.40
1335321--1335358	20	1.9	20	89	10	60	13	31	2	52	1.54
1335775--1335832	3	19.3	3	81	0	71	5	36	0	58	1.20
1335760--1335808	15	3.3	15	88	0	62	6	38	0	55	1.25
1336062--1336096	3	11.7	3	93	0	61	37	34	28	0	1.58
1344652--1344743	6	15.2	6	75	17	59	41	2	3	53	1.29
1344646--1344701	19	3.1	18	71	10	51	41	3	1	53	1.29
1345816--1345895	40	2.0	40	92	0	133	48	13	15	22	1.79
1348105--1348145	21	2.0	21	85	9	57	53	0	2	43	1.13
1355625--1355693	35	2.0	35	88	5	104	37	5	11	44	1.65
1355875--1355916	22	1.9	22	85	0	57	64	7	7	21	1.43
1356711--1356747	3	12.3	3	88	0	56	37	0	0	62	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1356862--1356923	22	3.0	21	75	15	74	48	0	1	50	1.10
1356863--1356923	11	5.7	11	79	11	65	47	0	1	50	1.10
1356908--1356957	20	2.5	21	78	15	61	38	2	2	58	1.21
1360461--1360504	21	2.1	21	100	0	88	18	9	13	59	1.60
1360639--1360678	2	19.5	2	89	5	62	45	2	2	50	1.28
1366109--1366147	2	19.5	2	100	0	78	51	48	0	0	1.00
1368360--1368399	17	2.5	16	88	8	55	62	5	0	32	1.17
1368888--1368944	28	2.0	28	93	6	98	56	0	3	40	1.17
1377931--1377969	20	2.0	20	90	10	62	46	15	5	33	1.68
1378091--1378172	43	1.9	43	90	5	130	30	20	12	36	1.89
1378130--1378336	69	3.0	71	77	11	230	34	21	9	35	1.85
1378134--1378407	136	2.0	137	82	4	340	35	19	9	36	1.83
1387249--1387288	22	1.9	20	90	10	62	32	0	0	67	0.91
1387257--1387300	22	2.0	22	82	8	54	36	0	0	63	0.95
1388655--1388719	20	3.0	21	77	8	69	50	0	0	49	1.00
1388671--1388718	23	2.1	23	85	11	64	45	0	0	54	0.99
1389671--1389734	31	2.1	31	87	0	92	31	12	15	40	1.85
1389746--1389787	10	4.2	10	82	11	50	42	0	11	45	1.41
1390491--1390536	17	2.7	18	80	10	60	28	0	4	67	1.10
1390789--1390860	20	3.5	21	70	10	60	34	4	4	56	1.37
1390450--1390975	282	1.9	282	79	6	600	32	10	5	51	1.60
1390970--1391009	19	2.2	19	86	4	55	30	5	0	65	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1391430--1391492	20	3.2	20	72	22	69	42	1	0	55	1.09
1391425--1391506	21	4.1	20	71	14	62	39	1	0	59	1.05
1391986--1392410	220	1.9	221	82	3	525	32	8	5	52	1.56
1392587--1392631	20	2.4	19	82	10	56	28	0	2	68	1.01
1392820--1393222	216	1.9	213	80	5	470	30	11	5	52	1.60
1394750--1394807	29	1.9	29	83	13	73	24	1	5	68	1.19
1418060--1418095	15	2.4	15	95	0	63	30	5	0	63	1.17
1418065--1418118	15	3.3	17	82	10	60	31	9	0	59	1.29
1418647--1418679	11	3.0	11	95	0	57	0	18	33	48	1.48
1419546--1419642	27	3.5	27	76	13	106	32	28	11	26	1.91
1419546--1419635	30	3.1	29	70	15	87	33	27	12	26	1.92
1421772--1421840	36	1.9	36	85	5	95	33	0	7	59	1.25
1421691--1422488	401	2.0	399	89	3	1219	40	5	9	45	1.59
1424675--1424707	9	3.8	9	88	8	50	27	0	0	72	0.85
1424716--1424776	26	2.2	28	85	5	90	55	0	1	42	1.09
1431842--1431883	17	2.4	18	84	15	61	19	0	0	80	0.70
1434510--1434551	19	2.2	20	91	4	68	54	0	4	40	1.21
1435187--1435211	2	12.5	2	100	0	50	48	0	0	52	1.00
1435443--1435485	19	2.3	19	100	0	86	72	0	9	18	1.11
1440805--1441045	133	1.8	134	86	4	353	33	17	16	32	1.92
1452324--1452380	27	2.2	26	83	3	69	42	0	1	56	1.10
1455268--1455300	16	1.9	18	88	11	52	36	3	6	54	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1473904--1473942	3	13.0	3	100	0	78	66	0	33	0	0.92
1474089--1474140	26	2.0	26	96	0	95	42	5	7	44	1.57
1474080--1474130	2	25.5	2	84	7	59	45	3	3	47	1.40
1484392--1484419	13	2.2	13	100	0	56	42	21	7	28	1.79
1488049--1488078	9	3.3	9	90	0	51	53	0	43	3	1.17
1488665--1488717	25	2.1	25	96	0	97	39	5	7	47	1.56
1488983--1489093	32	3.4	32	75	6	89	52	0	2	45	1.15
1489035--1489078	23	1.9	23	85	0	61	47	0	0	52	1.00
1489105--1489152	22	2.2	21	85	10	62	47	0	0	52	1.00
1506273--1506348	36	2.1	37	92	5	127	55	13	10	21	1.67
1510791--1510828	3	12.7	3	88	0	58	28	0	2	68	1.03
1511545--1511582	16	2.4	16	95	0	67	65	0	0	34	0.93
1517418--1517629	113	1.9	113	94	0	379	31	14	25	28	1.95
1518887--1519032	79	1.8	79	86	5	215	50	4	6	38	1.49
1519832--1519921	47	1.9	47	93	0	153	36	1	12	50	1.47
1520320--1520357	16	2.2	17	81	13	51	39	0	10	50	1.37
1520327--1520357	16	1.9	16	93	0	53	38	0	9	51	1.35
1520343--1520441	29	2.9	35	70	26	95	37	6	11	45	1.65
1526488--1526916	114	3.7	113	77	7	335	22	21	13	41	1.89
1527855--1527896	21	2.0	22	86	9	61	26	4	28	40	1.76
1527929--1527975	22	2.1	22	84	4	58	14	2	14	68	1.31
1528375--1528417	5	8.8	5	85	10	54	16	0	2	81	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1528380--1528418	18	2.2	17	90	9	60	15	0	2	82	0.79
1528374--1528419	24	2.0	23	95	4	83	17	0	2	80	0.81
1530867--1530963	48	2.0	48	91	0	158	35	4	11	49	1.58
1539381--1539435	26	2.1	26	100	0	110	38	14	14	32	1.87
1548555--1548595	20	2.0	20	85	4	55	46	4	0	48	1.23
1548830--1548858	13	2.1	14	93	6	51	55	0	13	31	1.39
1550448--1550489	20	2.1	20	82	8	50	30	0	4	64	1.14
1551209--1551235	12	2.2	12	100	0	54	37	14	7	40	1.74
1556050--1556078	3	9.7	3	100	0	58	31	0	0	68	0.89
1558145--1558240	48	2.0	48	87	0	138	36	3	12	47	1.57
1559017--1559062	24	1.9	24	95	0	83	45	4	4	45	1.43
1561212--1561259	24	2.0	24	87	0	69	43	4	6	45	1.48
1561425--1561469	22	2.0	22	91	8	74	40	8	11	40	1.72
1570928--1570961	16	2.1	16	94	0	59	47	0	8	44	1.34
1571301--1571349	24	2.0	24	84	0	62	46	4	8	40	1.52
1571340--1571398	24	2.5	24	80	2	66	47	6	6	38	1.57
1571360--1571413	24	2.2	24	90	0	81	48	3	5	42	1.44
1571578--1571621	23	1.9	23	86	9	63	40	11	9	38	1.73
1571816--1571975	79	2.0	79	93	0	275	51	5	6	36	1.51
1575597--1575704	29	3.5	30	70	22	80	33	3	7	55	1.45
1575617--1575674	18	3.2	18	67	13	55	41	1	6	50	1.39
1575689--1575719	16	1.9	16	100	0	62	38	0	3	58	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1581753--1581800	20	2.5	20	83	10	55	64	4	2	29	1.23
1582090--1582120	2	15.5	2	100	0	62	0	48	0	51	1.00
1587095--1587190	48	2.0	48	89	0	147	35	4	13	46	1.62
1602578--1602657	19	4.1	18	71	24	56	45	3	2	48	1.33
1605075--1605103	14	2.1	14	100	0	58	58	0	0	41	0.98
1605077--1605107	14	2.2	14	94	0	53	61	0	0	38	0.96
1607386--1607618	110	2.1	110	95	0	421	24	11	23	40	1.87
1612247--1612276	15	2.0	15	100	0	60	33	13	13	40	1.83
1626708--1626803	40	2.5	39	81	11	108	75	6	1	17	1.07
1626758--1626802	17	2.6	17	82	0	54	82	4	0	13	0.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133