genome.fa.s1.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  10  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3133704--3133729	2	13.0	2	100	0	52	50	0	0	50	1.00
3134837--3134871	16	2.2	16	90	5	54	57	0	5	37	1.23
3134845--3134876	16	1.9	17	93	6	57	50	0	3	46	1.17
3140320--3140352	17	1.9	17	88	11	50	24	9	0	66	1.20
3146231--3146259	12	2.5	12	94	5	51	48	0	3	48	1.18
3147118--3147328	111	1.9	110	84	2	280	49	8	10	31	1.66
3151443--3151558	31	3.8	30	74	11	92	21	16	19	42	1.89
3160625--3160652	12	2.3	12	100	0	56	50	21	14	14	1.78
3161467--3161597	31	4.2	31	76	0	136	22	20	12	44	1.85
3161467--3161597	62	2.1	62	82	0	154	22	20	12	44	1.85
3165010--3165276	31	8.7	31	87	2	344	31	9	16	43	1.79
3165010--3165276	61	4.4	62	86	1	344	31	9	16	43	1.79
3165010--3165270	92	2.8	92	89	0	369	31	9	15	42	1.79
3172105--3172493	31	12.8	29	81	5	323	31	8	16	42	1.79
3172105--3172491	92	4.2	91	82	4	418	32	8	16	42	1.79
3183124--3183172	19	2.6	19	96	0	89	12	4	34	48	1.59
3187212--3187287	31	2.5	31	82	0	98	23	22	15	38	1.93
3190079--3190127	25	2.0	25	95	0	89	38	4	14	42	1.64
3193917--3194140	30	7.5	30	86	3	272	33	12	27	27	1.92
3194093--3194180	30	3.0	29	80	8	81	37	14	25	22	1.92
3193917--3194165	90	2.8	90	79	6	229	33	12	27	25	1.93
3202246--3202287	17	2.4	17	88	11	59	64	7	16	11	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3228979--3229044	22	2.9	23	80	8	73	43	22	19	13	1.86
3233666--3233706	17	2.4	18	76	12	50	12	9	0	78	0.98
3238764--3238818	27	2.0	27	82	6	67	60	1	16	21	1.45
3239596--3239746	25	6.1	24	73	13	94	25	23	22	27	2.00
3239616--3239717	24	4.2	24	77	8	89	24	23	25	26	2.00
3260604--3260691	40	2.2	41	89	2	133	42	20	6	30	1.78
3260604--3260671	21	3.3	21	70	15	70	39	20	7	32	1.80
3260916--3260965	25	2.0	25	84	11	66	36	22	0	42	1.54
3272158--3272189	14	2.3	14	100	0	64	46	25	6	21	1.74
3272706--3272828	42	2.9	42	72	6	115	43	17	21	16	1.87
3285109--3285212	27	3.8	27	83	8	122	32	12	26	27	1.93
3286400--3286433	12	2.8	12	95	0	59	11	44	20	23	1.84
3293925--3293972	24	2.0	24	88	8	71	60	6	0	33	1.22
3297718--3297746	3	9.7	3	100	0	58	34	0	0	65	0.93
3297850--3297884	18	1.9	18	88	0	52	45	2	5	45	1.41
3297867--3297912	22	2.1	22	100	0	92	50	4	4	41	1.42
3298576--3298681	54	2.0	53	88	1	158	40	14	11	33	1.81
3300593--3300688	34	2.9	34	80	6	106	14	20	17	46	1.83
3306427--3306455	14	2.1	14	100	0	58	55	13	0	31	1.39
3309688--3309715	14	2.0	14	100	0	56	35	7	0	57	1.26
3316903--3316938	18	2.0	18	100	0	72	38	5	16	38	1.72
3323082--3323264	91	2.0	91	100	0	366	29	25	17	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3332802--3332834	16	2.0	17	88	5	50	39	12	3	45	1.57
3335477--3335571	47	2.0	48	97	2	183	35	15	10	37	1.82
3337503--3337616	59	2.0	58	84	6	151	48	3	4	43	1.40
3339507--3339563	29	1.9	30	96	3	107	47	14	8	29	1.74
3344745--3344802	25	2.3	25	87	0	80	31	22	20	25	1.98
3344725--3344847	50	2.5	50	75	12	112	33	21	21	24	1.97
3345777--3345821	23	2.0	23	95	0	81	37	6	11	44	1.66
3346194--3346487	27	10.9	27	85	0	374	42	22	16	18	1.88
3346626--3346732	26	4.1	26	88	0	151	21	20	21	36	1.95
3346829--3346905	33	2.3	33	84	2	91	23	25	23	27	2.00
3355484--3355872	196	2.0	196	96	0	724	39	13	14	32	1.85
3362999--3363051	11	4.6	11	76	15	54	60	5	5	28	1.42
3364748--3365406	50	13.2	50	72	5	472	25	18	22	33	1.97
3364748--3365432	100	6.8	100	91	0	1001	25	19	22	32	1.97
3366720--3366783	7	9.0	7	83	14	71	15	14	0	70	1.17
3367627--3367671	22	2.1	22	87	4	65	2	20	0	77	0.87
3367660--3367766	35	3.2	33	77	16	105	9	7	9	73	1.24
3367684--3367759	20	3.8	20	71	3	71	7	6	10	75	1.20
3367710--3367766	26	2.2	26	93	0	96	8	3	12	75	1.16
3369761--3369811	24	2.3	21	80	10	57	15	19	17	47	1.83
3371954--3372006	11	4.6	11	76	15	54	60	5	5	28	1.42
3374651--3374691	18	2.2	19	91	4	66	39	2	0	58	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3386265--3386385	46	2.6	47	81	11	128	34	8	0	56	1.35
3386235--3386396	69	2.3	69	79	9	186	32	7	3	56	1.45
3386240--3386385	23	6.3	23	73	16	97	32	7	2	56	1.41
3392622--3392699	39	2.0	39	100	0	156	43	17	15	23	1.87
3393015--3393629	308	2.0	309	99	0	1214	37	14	16	31	1.88
3393940--3393966	2	13.5	2	100	0	54	51	0	0	48	1.00
3394895--3394953	3	19.7	3	100	0	118	32	0	0	67	0.91
3395261--3395317	29	2.0	29	82	6	71	31	12	12	43	1.79
3402122--3402182	29	2.1	28	78	3	68	45	13	16	24	1.83
3402283--3402313	16	1.9	16	100	0	62	38	6	35	19	1.77
3402525--3402566	15	2.7	16	82	14	52	52	2	0	45	1.13
3402534--3402575	15	2.9	15	82	10	52	52	0	0	47	1.00
3408396--3408685	107	2.7	107	91	0	472	45	23	6	24	1.76
3420753--3420777	11	2.3	11	100	0	50	28	0	56	16	1.41
3425427--3425476	25	2.0	25	92	0	82	32	20	6	42	1.76
3425430--3425493	25	2.5	25	84	2	74	29	23	4	42	1.74
3426043--3426239	30	6.6	30	77	8	143	22	25	13	38	1.90
3426043--3426331	60	4.9	60	71	9	189	22	25	13	38	1.91
3426043--3426318	30	9.3	29	76	8	139	22	25	13	38	1.91
3426282--3426351	29	2.4	29	82	0	95	24	28	11	35	1.90
3426612--3426644	17	1.9	17	88	11	50	36	12	9	42	1.74
3429033--3429063	13	2.4	13	100	0	62	54	0	12	32	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3436136--3436168	6	5.7	6	96	3	59	84	0	0	15	0.61
3454672--3454728	26	2.0	27	83	12	71	52	1	5	40	1.34
3454870--3454947	31	2.6	30	83	4	86	19	17	10	52	1.73
3454896--3454966	31	2.3	31	82	4	90	25	15	11	47	1.78
3460037--3460064	13	2.2	13	100	0	56	42	14	7	35	1.73
3471683--3471878	43	4.6	43	82	5	207	22	17	17	42	1.89
3471689--3471878	86	2.2	86	86	1	256	22	16	17	42	1.89
3477760--3477916	18	8.7	18	100	0	314	33	11	11	43	1.77
3478343--3478648	72	4.2	72	88	2	445	24	6	15	53	1.65
3480372--3480422	21	2.5	21	76	20	54	49	1	1	47	1.24
3480672--3480728	27	2.1	27	83	0	69	35	24	5	35	1.78
3480683--3480749	13	5.1	13	80	10	82	35	26	7	29	1.84
3480685--3480749	26	2.4	28	87	7	91	35	26	7	30	1.84
3492037--3492087	21	2.5	22	81	12	63	31	3	3	60	1.33
3493839--3493934	31	3.1	31	95	3	174	45	13	9	31	1.75
3504543--3504575	13	2.4	14	90	5	50	21	6	0	72	1.05
3504606--3504634	15	1.9	15	100	0	58	75	0	24	0	0.80
3505076--3505108	13	2.4	14	90	5	50	21	6	0	72	1.05
3505139--3505167	15	1.9	15	100	0	58	75	0	24	0	0.80
3504465--3505534	533	2.0	534	99	0	2133	36	15	11	37	1.83
3505962--3505998	9	4.2	9	89	3	58	13	0	29	56	1.37
3510918--3510953	18	1.9	18	88	5	54	58	2	0	38	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3511112--3511159	22	2.4	19	80	19	53	18	22	14	43	1.87
3512369--3512401	2	16.5	2	100	0	66	51	0	0	48	1.00
3512500--3512540	16	2.6	16	88	7	57	41	0	9	48	1.36
3515091--3515278	51	3.7	51	83	2	209	32	27	14	25	1.94
3515192--3515224	14	2.5	13	90	9	50	39	27	9	24	1.85
3520289--3520326	18	2.1	18	90	0	58	31	0	34	34	1.58
3520718--3520774	10	5.7	10	80	15	64	19	10	1	68	1.28
3526875--3527001	62	2.0	63	89	3	193	44	7	19	28	1.77
3527336--3527547	110	1.9	110	87	3	311	31	16	17	33	1.93
3531260--3531303	16	2.8	16	92	0	79	22	20	4	52	1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141