genome.fa.s1.2.7.7.80.10.50.1000.127.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  127  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40569561--40569620	19	3.2	18	85	7	66	35	0	6	58	1.24
40578514--40578544	13	2.4	13	94	0	53	51	12	3	32	1.56
40583847--40583886	19	2.1	19	86	9	55	40	0	2	57	1.12
40588583--40588651	3	23.3	3	97	2	131	66	0	0	33	0.92
40589799--40589981	91	2.0	92	98	1	359	46	7	3	42	1.48
40590708--40590740	15	2.1	16	88	5	50	69	9	6	15	1.34
40591092--40591124	14	2.4	14	94	0	57	0	39	0	60	0.97
40591094--40591124	12	2.6	12	94	0	53	0	38	0	61	0.96
40614579--40614625	23	2.0	22	84	12	58	51	0	4	44	1.21
40615158--40615187	16	1.9	16	93	6	53	50	3	6	40	1.45
40615333--40615381	11	4.6	11	80	14	50	24	2	4	69	1.17
40623811--40623856	22	2.1	22	95	0	83	21	6	32	39	1.79
40638150--40638195	24	1.9	24	86	8	67	45	8	6	39	1.61
40640377--40640474	51	1.9	51	85	0	133	44	17	2	35	1.60
40641000--40641045	9	5.0	9	81	5	56	58	4	2	34	1.30
40641000--40641045	19	2.5	19	85	3	67	58	4	2	34	1.30
40641002--40641057	28	2.0	28	82	3	67	60	3	5	30	1.36
40649781--40649827	24	1.9	24	82	4	58	70	4	2	23	1.16
40663878--40663909	2	16.0	2	100	0	64	0	50	0	50	1.00
40664111--40664142	2	16.0	2	100	0	64	0	50	0	50	1.00
40663790--40664214	233	1.8	233	99	0	841	24	24	21	29	1.99
40679643--40679676	17	1.9	17	88	5	50	61	0	2	35	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40681889--40682310	139	3.1	137	80	4	476	48	11	14	25	1.78
40687046--40687088	22	1.9	22	85	4	59	34	0	6	58	1.25
40690932--40690982	19	2.6	20	81	6	59	29	0	3	66	1.09
40702412--40702449	18	2.1	18	90	0	58	52	2	0	44	1.14
40705975--40706018	18	2.4	18	80	3	52	31	2	6	59	1.36
40710468--40710515	18	2.7	18	83	0	60	29	4	0	66	1.10
40713220--40713252	15	2.1	16	88	5	50	69	0	6	24	1.10
40717919--40717952	17	1.9	17	88	5	50	55	2	0	41	1.15
40719906--40719989	42	2.0	42	86	4	116	15	22	19	42	1.88
40721724--40721804	38	2.1	38	81	0	90	34	12	18	34	1.88
40731260--40731295	17	2.1	18	89	5	56	44	2	0	52	1.15
40732779--40732821	18	2.5	17	85	7	52	72	4	0	23	1.04
40734205--40734278	31	2.4	31	84	4	87	25	12	9	52	1.68
40743729--40743782	25	2.1	26	83	10	67	40	11	5	42	1.64
40744620--40744668	18	2.9	18	77	17	52	63	0	0	36	0.95
40744655--40744690	18	1.9	18	88	5	54	69	2	0	27	1.02
40746268--40746304	13	2.8	14	84	12	51	8	16	2	72	1.19
40749537--40750063	263	2.0	264	99	0	1047	40	10	12	36	1.78
40752191--40752215	7	3.6	7	100	0	50	60	40	0	0	0.97
40758693--40758732	19	2.1	19	86	9	55	40	7	0	52	1.30
40768787--40768820	16	2.1	16	94	0	59	32	0	8	58	1.29
40768852--40769072	43	5.2	43	84	3	259	25	18	29	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40768869--40769069	85	2.3	86	85	4	273	26	17	29	25	1.98
40771270--40771315	19	2.4	19	92	3	74	43	17	15	23	1.87
40778285--40778342	31	1.9	29	86	13	82	55	3	6	34	1.44
40782154--40782267	19	5.8	19	86	5	147	37	8	14	38	1.78
40782155--40782253	40	2.5	40	93	3	166	39	9	14	37	1.77
40782154--40782267	59	1.9	58	87	1	165	37	8	14	38	1.78
40785644--40785712	34	2.1	34	81	7	81	53	0	2	43	1.15
40785672--40785714	22	2.0	22	90	4	70	48	0	2	48	1.14
40785675--40785721	22	2.2	22	84	3	60	55	0	4	40	1.19
40786049--40786108	20	3.0	20	78	4	68	38	3	3	55	1.33
40795609--40795677	34	2.1	34	81	7	81	53	0	2	43	1.15
40795637--40795679	22	2.0	22	90	4	70	48	0	2	48	1.14
40795640--40795686	22	2.2	22	84	3	60	55	0	4	40	1.19
40795952--40796001	20	2.5	20	86	0	64	42	4	2	52	1.31
40803900--40803934	5	7.0	5	100	0	70	40	0	0	60	0.97
40805513--40805557	23	2.0	23	86	8	65	48	0	15	35	1.45
40805813--40805871	21	3.0	20	76	11	59	47	0	0	52	1.00
40841810--40841874	30	2.1	30	83	8	78	32	10	15	41	1.81
40845807--40845838	2	16.0	2	93	0	55	46	50	0	3	1.17
40850129--40850154	3	8.7	3	100	0	52	65	0	0	34	0.93
40851547--40851572	11	2.4	11	100	0	52	0	11	0	88	0.52
40851330--40851670	170	2.0	172	93	2	580	19	15	13	51	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40851672--40851705	14	2.5	14	95	4	61	14	0	35	50	1.44
40851835--40851883	25	1.9	26	83	4	64	69	6	6	18	1.31
40852012--40852062	15	3.5	15	70	5	50	49	13	13	23	1.78
40859626--40859662	17	2.2	18	85	9	51	48	0	0	51	1.00
40889148--40889191	22	2.1	21	87	8	63	25	15	13	45	1.83
40898621--40898658	18	2.1	18	95	0	67	50	0	0	50	1.00
40900495--40900526	14	2.3	15	89	10	50	25	3	0	71	1.00
40900503--40900549	23	2.1	22	88	4	67	29	4	2	63	1.25
40901305--40901447	68	2.1	69	94	2	252	15	20	1	62	1.39
40908317--40908355	19	2.1	19	85	0	51	61	0	0	38	0.96
40908366--40908409	21	2.1	21	83	8	54	40	4	4	50	1.43
40910527--40910565	17	2.3	17	90	0	60	53	0	0	46	1.00
40913747--40913823	25	3.1	25	92	0	127	24	24	10	40	1.86
40921128--40921166	18	2.1	19	86	13	55	35	15	12	35	1.86
40921897--40922377	240	2.0	241	99	0	946	30	17	19	33	1.94
40923457--40923489	14	2.4	14	90	5	50	51	3	3	42	1.32
40923424--40924056	65	9.7	65	100	0	1266	46	3	7	43	1.48
40923522--40923554	14	2.4	14	90	5	50	51	3	3	42	1.32
40923587--40923619	14	2.4	14	90	5	50	51	3	3	42	1.32
40923652--40923684	14	2.4	14	90	5	50	51	3	3	42	1.32
40923717--40923749	14	2.4	14	90	5	50	51	3	3	42	1.32
40923782--40923814	14	2.4	14	90	5	50	51	3	3	42	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40923847--40923879	14	2.4	14	90	5	50	51	3	3	42	1.32
40923912--40923944	14	2.4	14	90	5	50	51	3	3	42	1.32
40923977--40924009	14	2.4	14	90	5	50	51	3	3	42	1.32
40929736--40929953	103	2.1	104	98	1	420	35	9	8	46	1.67
40952207--40952250	2	22.0	2	100	0	88	50	0	50	0	1.00
40952258--40952284	12	2.2	12	100	0	54	29	25	18	25	1.98
40956653--40956678	11	2.4	11	100	0	52	53	0	7	38	1.30
40956586--40956688	42	2.4	40	88	9	143	61	0	2	35	1.11
40968613--40968833	113	1.9	114	83	0	282	36	31	10	21	1.88
40981145--40981258	58	1.9	58	86	8	160	43	7	21	26	1.80
40989699--40989737	18	2.1	18	85	4	51	51	0	5	43	1.24
40991321--40991383	31	2.1	30	82	11	76	30	14	11	44	1.79
40994118--40994170	27	2.0	27	82	13	67	49	15	15	20	1.80
41000755--41000874	30	4.0	30	100	0	240	26	36	0	36	1.57
41001729--41001779	18	2.8	18	76	5	59	19	0	5	74	1.02
41009738--41009773	17	2.1	17	94	0	63	58	25	0	16	1.38
41012952--41012979	8	3.5	8	100	0	56	0	10	0	89	0.49
41016185--41016219	18	1.9	18	88	0	52	25	2	25	45	1.67
41023214--41023263	23	2.1	24	81	3	57	34	6	16	44	1.72
41024205--41024324	63	1.9	64	84	5	163	45	6	3	44	1.46
41031925--41032184	128	2.0	129	97	2	497	33	9	7	49	1.63
41032313--41033374	147	7.2	147	94	0	1770	34	13	19	32	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41032313--41033374	293	3.6	293	97	0	1944	34	13	19	32	1.91
41032313--41033372	440	2.4	439	93	0	1762	34	13	19	32	1.91
41034338--41035064	121	6.0	121	99	0	1400	36	12	13	36	1.83
41043045--41043479	147	3.0	147	92	0	728	34	13	19	33	1.90
41044443--41044685	121	2.0	121	95	0	432	37	13	13	36	1.83
41053041--41053073	11	3.1	11	91	4	50	66	3	0	30	1.06
41053157--41053193	19	1.9	19	88	0	56	32	2	0	64	1.07
41053155--41053214	9	6.3	10	78	16	65	30	1	1	66	1.11
41053164--41053214	19	2.7	18	82	14	59	27	1	1	68	1.11
41053179--41053248	28	2.4	29	74	9	72	34	2	1	61	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141