genome.fa.s1.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  106  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34459033--34459456	212	2.0	212	95	0	760	39	22	16	21	1.91
34459864--34459935	36	2.0	36	97	0	135	40	13	11	34	1.81
34461741--34461824	22	4.0	21	79	13	84	19	7	0	73	1.05
34461849--34461917	28	2.3	32	80	16	85	21	1	8	68	1.25
34462174--34462222	23	2.2	23	81	3	55	18	2	6	73	1.14
34468780--34468853	13	4.9	16	69	30	56	13	32	33	20	1.91
34468768--34468928	30	5.4	30	84	5	209	16	30	32	20	1.94
34477445--34477514	33	2.1	34	94	5	124	18	12	5	62	1.49
34482463--34482527	28	2.3	28	97	0	121	15	6	16	61	1.53
34485686--34485729	5	9.0	5	80	5	54	18	4	2	75	1.09
34489181--34489302	23	5.3	23	81	2	129	13	12	27	46	1.78
34491335--34491370	7	5.1	7	100	0	72	13	27	0	58	1.36
34496306--34496330	2	12.5	2	100	0	50	52	0	0	48	1.00
34513447--34513520	37	2.0	37	97	0	139	20	10	28	40	1.86
34518429--34518465	19	1.9	19	100	0	74	27	16	21	35	1.94
34519031--34519061	2	15.5	2	100	0	62	48	0	0	51	1.00
34525848--34525920	33	2.2	33	100	0	146	46	24	2	26	1.66
34525938--34525975	13	2.8	14	84	4	51	28	18	10	42	1.83
34526460--34526996	266	2.0	267	99	0	1067	42	10	6	40	1.64
34532358--34532402	7	6.6	7	97	2	83	44	13	11	31	1.78
34534998--34535037	14	2.9	14	84	0	53	32	7	17	42	1.77
34535021--34535060	20	2.0	20	90	0	62	27	10	12	50	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34535006--34535072	34	1.9	35	90	3	109	31	8	13	46	1.74
34535000--34535076	14	5.0	15	71	20	52	32	9	15	42	1.78
34535053--34535137	32	2.6	31	76	9	89	25	10	18	44	1.82
34535387--34535530	72	2.0	72	93	0	243	45	18	8	27	1.78
34536453--34536496	20	2.1	21	91	8	72	45	27	0	27	1.54
34536486--34536553	35	1.9	36	96	3	129	52	19	2	25	1.59
34541072--34541123	25	2.1	25	85	7	70	40	11	25	23	1.88
34546538--34546583	18	2.6	18	85	0	56	30	15	26	28	1.96
34559004--34559057	19	2.8	19	94	0	99	37	9	16	37	1.81
34559004--34559080	38	1.9	40	87	10	113	36	7	16	38	1.78
34559262--34559306	23	2.0	23	81	0	54	22	0	15	62	1.33
34560638--34560681	21	2.1	21	100	0	88	52	0	13	34	1.41
34560891--34560940	20	2.5	21	87	9	77	58	6	10	26	1.54
34561776--34561824	8	6.1	8	77	17	57	69	2	0	28	1.00
34567401--34567448	21	2.3	21	89	7	71	4	16	4	75	1.12
34571968--34572002	17	2.0	18	88	5	54	22	5	14	57	1.59
34572723--34572851	43	3.0	44	81	10	167	25	17	27	28	1.98
34572727--34572851	44	2.9	43	82	9	164	24	18	28	28	1.98
34574801--34574888	43	2.2	41	80	11	101	48	5	3	42	1.43
34574876--34574930	25	2.2	25	81	12	60	49	5	1	43	1.36
34583710--34583769	25	2.4	25	76	18	61	48	20	10	21	1.78
34593921--34593974	27	2.0	27	100	0	108	44	11	18	25	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34596895--34596935	20	2.0	20	95	0	73	14	36	4	43	1.67
34603816--34603852	17	2.2	17	100	0	74	51	5	10	32	1.60
34606165--34606373	105	2.0	105	94	0	364	49	14	8	27	1.73
34606272--34606555	90	3.2	90	87	0	433	49	14	8	27	1.73
34606644--34606686	21	2.0	22	82	13	54	65	9	2	23	1.34
34623830--34623873	19	2.3	19	88	4	61	47	6	2	43	1.42
34623852--34623940	33	2.6	34	87	3	117	44	12	10	32	1.75
34623926--34623982	21	2.7	21	78	10	71	43	10	7	38	1.66
34623920--34623982	22	3.0	22	82	13	78	39	9	7	42	1.67
34623851--34624088	36	6.6	35	75	13	173	45	9	11	33	1.73
34623846--34624088	18	13.4	18	72	14	124	46	9	11	32	1.72
34624915--34624982	28	2.5	28	83	7	77	0	29	0	70	0.87
34624946--34624984	13	2.9	14	88	7	62	0	28	0	71	0.86
34625108--34625149	17	2.4	18	88	11	61	2	16	0	80	0.81
34625719--34625865	30	5.0	30	74	16	119	38	4	23	33	1.76
34626318--34626355	16	2.3	17	86	4	51	39	13	0	47	1.42
34626994--34627328	132	2.5	132	92	0	546	27	19	24	28	1.99
34633715--34633755	20	2.0	20	86	9	57	14	17	4	63	1.47
34637744--34638184	174	2.5	175	92	1	733	28	20	25	25	1.99
34639021--34639051	13	2.3	14	94	5	55	61	9	22	6	1.50
34644360--34644411	25	2.0	25	85	11	68	65	15	1	17	1.36
34644758--34644791	17	2.0	17	88	11	52	47	8	14	29	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34646079--34646123	23	2.0	23	87	8	67	37	0	0	62	0.96
34646079--34646118	10	3.9	10	80	6	53	32	0	0	67	0.91
34646076--34646121	12	4.2	12	76	18	55	36	0	0	63	0.95
34653446--34653674	43	5.3	43	87	5	304	31	20	23	24	1.98
34653446--34653670	85	2.6	86	86	5	303	32	20	23	24	1.98
34654123--34654191	21	3.3	21	87	0	93	1	42	18	37	1.60
34666614--34666652	15	2.5	16	83	4	53	35	43	0	20	1.52
34667152--34667429	41	6.8	41	79	3	283	35	23	24	16	1.95
34667152--34667429	82	3.4	81	83	3	333	35	23	24	16	1.95
34679343--34679412	34	2.0	35	91	2	115	45	14	4	35	1.64
34689179--34689227	15	3.3	14	80	8	53	81	2	12	4	0.91
34690132--34691020	89	10.0	89	81	1	888	29	23	22	25	1.99
34691047--34709254	50	365.4	50	66	5	7110	32	21	20	25	1.98
34691053--34719360	200	142.1	199	80	3	16656	32	21	20	25	1.98
34694186--34717380	897	25.8	897	81	4	8203	32	21	20	25	1.98
34694186--34717125	100	229.6	99	78	5	8597	32	21	20	25	1.98
34709183--34709335	81	1.9	81	88	0	234	35	17	21	25	1.95
34709324--34715976	50	133.6	50	65	4	2133	32	21	20	25	1.98
34709083--34709586	181	2.7	181	80	7	517	33	19	20	26	1.96
34716116--34717125	50	20.2	50	69	2	450	31	21	21	25	1.98
34716123--34721014	199	24.7	200	77	5	2955	32	20	20	25	1.97
34717089--34717162	37	2.0	37	86	0	103	18	18	35	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34717157--34718927	50	35.5	50	74	6	1001	33	21	19	25	1.97
34716970--34717311	186	1.8	187	89	0	533	29	21	24	23	1.99
34717126--34721023	100	39.3	99	80	3	2881	32	20	20	25	1.97
34718896--34718962	35	1.9	35	93	0	116	44	14	17	22	1.86
34718792--34719062	135	2.0	135	87	1	391	34	20	20	24	1.97
34718927--34721004	50	41.9	50	66	5	794	32	20	20	25	1.97
34718720--34719162	235	1.9	235	88	0	681	32	21	20	25	1.98
34718927--34719507	149	3.9	149	74	5	458	33	20	20	24	1.97
34718991--34719409	198	2.1	199	83	3	522	33	21	20	25	1.97
34721002--34723486	69	36.0	69	100	0	4970	26	23	31	18	1.97
34723448--34723702	100	2.6	100	83	4	327	34	21	18	25	1.96
34723801--34724276	100	4.8	100	77	1	470	32	22	19	25	1.98
34723801--34725020	50	24.4	50	66	5	366	31	21	21	25	1.98
34724248--34725071	100	8.2	100	82	2	949	31	21	21	25	1.98
34737269--34745377	100	81.6	100	79	3	5753	32	21	20	24	1.97
34738676--34739266	150	3.9	150	73	3	416	29	22	22	25	1.99
34737827--34739258	50	28.7	49	65	7	295	31	21	20	25	1.98
34739346--34739485	49	2.8	50	72	6	131	35	25	19	20	1.95
34739844--34740202	49	7.3	50	63	20	166	34	21	21	23	1.97
34739736--34745192	50	110.2	50	63	9	1117	32	21	20	25	1.97
34741847--34744361	149	16.9	149	68	7	1118	32	21	20	24	1.98
34743308--34744361	443	2.4	445	90	1	1605	32	22	20	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34744330--34744578	92	2.7	92	93	1	401	34	18	21	26	1.96
34739725--34745377	199	28.5	198	79	4	4560	32	21	20	24	1.97
34745947--34746504	50	11.3	50	65	7	235	32	22	19	25	1.97
34745935--34746504	100	5.8	100	79	7	536	32	22	20	25	1.98
34745935--34746504	200	2.9	200	84	4	705	32	22	20	25	1.98
34746719--34750947	100	42.2	100	76	6	2596	32	21	20	25	1.98
34747893--34748476	199	2.9	199	84	4	775	32	21	21	24	1.98
34748352--34750947	199	13.1	197	82	3	2528	32	20	20	25	1.98
34748352--34750947	299	8.7	299	81	3	2651	32	20	20	25	1.98
34748025--34748914	448	2.0	447	90	0	1404	32	21	20	25	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141