genome.fa.s1.2.7.7.80.10.50.1000.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  17  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5534096--5534186	45	2.0	44	82	2	110	36	27	5	30	1.80
5534167--5534218	16	3.2	16	88	0	77	36	34	0	28	1.58
5540624--5540703	40	2.0	40	100	0	160	42	7	12	37	1.71
5540699--5540745	23	2.1	22	84	4	58	10	10	2	76	1.10
5540723--5540771	13	3.9	13	74	17	50	16	4	2	77	1.01
5540717--5540762	5	9.8	5	77	13	53	17	2	0	80	0.81
5540708--5540766	23	2.6	22	86	5	73	16	5	1	76	1.05
5541736--5541791	20	2.8	20	78	13	69	37	14	1	46	1.55
5545875--5545916	12	3.7	12	79	20	54	21	2	0	76	0.90
5546880--5546935	20	2.8	20	78	13	69	37	14	1	46	1.55
5551996--5552063	10	7.0	10	85	6	86	83	0	14	1	0.71
5551996--5552063	19	3.5	19	84	9	93	83	0	14	1	0.71
5551996--5552063	29	2.3	29	87	5	102	83	0	14	1	0.71
5553308--5553396	45	2.0	45	81	0	106	29	20	24	25	1.99
5553422--5553933	100	5.1	99	82	5	555	31	23	21	23	1.98
5553476--5553850	50	7.5	50	70	7	242	32	24	20	22	1.98
5553942--5554351	217	1.9	217	90	1	660	29	20	22	27	1.99
5553942--5554334	44	9.1	44	68	14	190	29	20	22	27	1.99
5555157--5555202	13	3.8	13	76	23	55	21	2	0	76	0.90
5556178--5556233	20	2.8	20	78	13	69	37	14	1	46	1.55
5557961--5558007	3	15.7	3	100	0	94	34	0	0	65	0.93
5559400--5559536	35	3.9	35	82	1	159	42	18	18	20	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5559400--5559536	69	2.0	70	80	1	159	42	18	18	20	1.90
5560814--5560848	7	5.3	7	93	6	56	14	71	0	14	1.15
5560814--5560847	6	5.3	6	89	10	50	14	70	0	14	1.17
5560814--5560848	13	2.6	14	86	13	56	14	71	0	14	1.15
5579957--5579989	10	3.3	10	87	12	50	33	0	0	66	0.92
5581836--5582471	106	6.0	106	88	1	914	33	17	17	31	1.94
5584541--5584855	131	2.4	131	86	0	432	27	25	17	29	1.98
5584629--5585553	44	21.1	44	66	11	346	27	24	18	29	1.98
5584659--5585009	175	2.0	175	94	0	612	28	25	17	28	1.98
5584830--5585550	131	5.5	131	92	0	1156	27	25	19	28	1.98
5584536--5585156	306	2.0	307	87	0	911	27	25	18	28	1.98
5586045--5586224	97	1.9	97	91	0	297	47	7	17	27	1.74
5586067--5586227	47	3.3	46	70	19	139	45	8	18	28	1.77
5591794--5591836	16	2.8	16	85	3	61	44	0	4	51	1.22
5592899--5592946	25	1.9	25	86	0	69	33	18	16	31	1.94
5598791--5598844	4	13.8	4	80	7	58	68	0	5	25	1.11
5600386--5600504	44	2.7	44	81	2	123	33	21	15	28	1.95
5600458--5601112	51	12.9	52	70	14	379	29	20	15	33	1.94
5600429--5600853	96	4.3	95	73	13	282	29	21	16	32	1.95
5600558--5600757	110	1.8	110	87	2	303	30	22	16	32	1.95
5600558--5601112	257	2.2	257	88	1	799	29	20	15	33	1.94
5600719--5601551	206	4.0	201	81	6	859	29	21	14	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5601116--5601147	15	2.1	15	94	0	55	21	40	3	34	1.69
5601021--5601252	110	2.1	111	86	1	331	29	23	13	33	1.93
5600815--5601551	206	3.6	209	85	6	925	29	21	14	34	1.93
5601231--5601456	117	2.0	114	85	8	309	30	21	13	34	1.92
5601406--5601573	45	3.6	45	74	10	167	30	22	16	30	1.95
5601348--5601580	95	2.4	96	88	0	351	30	20	16	32	1.94
5606319--5606398	24	3.2	25	80	7	92	16	23	23	36	1.94
5611485--5611548	4	16.8	4	76	12	55	67	0	4	28	1.11
5612992--5613033	22	1.9	23	85	9	61	47	7	2	42	1.43
5616736--5616795	30	2.0	30	93	0	102	38	11	18	31	1.87
5624173--5624218	11	4.2	11	83	8	58	80	0	8	10	0.91
5624182--5624229	10	5.1	9	75	9	51	79	0	6	14	0.92
5624183--5624229	19	2.5	18	77	16	51	78	0	6	14	0.93
5627531--5627590	29	2.1	30	81	6	70	61	3	8	26	1.40
5629008--5629043	14	2.5	14	86	4	54	33	0	0	66	0.92
5632484--5632519	17	2.1	17	89	0	54	36	13	8	41	1.75
5635340--5635410	32	2.3	29	83	11	81	42	26	22	8	1.82
5636923--5636974	10	5.3	10	76	4	52	36	1	0	61	1.07
5636918--5636978	29	2.1	29	87	0	86	32	3	0	63	1.10
5638922--5639037	61	1.9	60	84	6	155	37	6	7	49	1.57
5643117--5643157	21	1.9	22	85	5	57	19	2	4	73	1.13
5644817--5645121	126	2.4	126	88	2	443	28	19	14	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5647691--5647775	9	9.4	9	70	19	52	64	2	2	30	1.18
5647739--5647801	18	3.5	17	76	16	56	69	3	3	23	1.17
5648129--5648306	100	1.8	99	84	8	247	37	12	16	34	1.86
5650869--5650904	19	1.9	19	88	5	56	55	0	5	38	1.23
5659748--5659862	58	2.0	58	92	0	194	29	18	24	27	1.98
5664837--5664897	29	2.1	29	100	0	122	39	13	3	44	1.60
5664837--5664885	17	3.2	17	67	27	54	40	12	4	42	1.61
5668829--5668907	31	2.5	32	79	2	88	27	6	13	51	1.65
5672258--5672286	9	3.0	10	90	10	51	58	0	20	20	1.39
5673706--5673745	21	1.9	21	89	0	62	57	0	12	30	1.36
5673753--5673793	21	2.0	21	85	0	55	41	9	12	36	1.76
5673846--5673904	19	3.1	19	90	4	91	50	8	1	38	1.43
5673892--5673920	14	2.1	14	100	0	58	51	13	0	34	1.42
5676095--5676160	8	8.4	8	81	8	82	50	13	12	24	1.76
5679833--5680471	335	1.9	335	100	0	1278	39	8	11	41	1.71
5681375--5681418	16	2.7	16	89	10	63	2	31	0	65	1.05
5682241--5682316	38	2.0	38	86	0	107	32	10	18	38	1.85
5682377--5682651	43	6.5	43	80	4	267	28	20	16	34	1.94
5688795--5688834	19	2.0	20	85	4	55	0	27	0	72	0.85
5690093--5690129	19	2.0	19	85	15	51	45	2	2	48	1.30
5690665--5690723	11	5.3	11	80	10	66	22	32	1	44	1.63
5690665--5690739	11	6.7	11	77	7	62	25	28	1	45	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5690665--5690739	33	2.2	34	79	9	82	25	28	1	45	1.62
5690665--5690739	22	3.4	22	80	15	91	25	28	1	45	1.62
5691890--5691915	7	3.7	7	100	0	52	26	0	15	57	1.38
5692908--5692940	16	2.1	16	100	0	66	18	36	33	12	1.88
5693133--5693225	27	3.6	27	71	19	99	44	33	0	22	1.53
5693133--5693241	49	2.2	49	90	3	166	43	33	0	22	1.60
5693176--5693224	15	3.5	15	71	25	52	42	36	0	20	1.52
5693149--5694129	43	22.9	42	76	12	749	43	30	1	25	1.62
5693198--5693334	22	6.8	21	74	15	76	40	32	2	24	1.67
5693331--5694129	22	36.8	22	81	6	878	43	30	1	25	1.62
5693331--5694129	65	12.3	65	81	5	866	43	30	1	25	1.62
5696148--5696190	3	14.3	3	95	0	77	30	2	0	67	1.03
5699093--5699125	17	1.9	17	93	0	57	57	6	0	36	1.23
5700223--5700346	63	2.0	61	95	3	214	41	8	35	14	1.77
5700571--5700629	29	2.0	29	100	0	118	35	16	16	30	1.92
5703195--5703238	19	2.5	17	85	7	52	70	6	0	22	1.11
5703640--5703692	24	2.2	24	86	0	70	39	9	16	33	1.81
5704644--5704755	28	3.9	29	71	16	83	55	4	0	40	1.20
5706784--5706842	30	2.0	30	83	6	75	55	1	3	38	1.26
5708714--5708779	30	2.2	30	86	0	87	30	21	21	27	1.98
5711790--5711854	19	3.4	19	78	4	85	60	3	4	32	1.33
5711793--5711854	20	3.2	20	75	11	74	61	3	4	30	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5711793--5711895	39	2.5	39	82	6	107	59	4	5	30	1.42
5711991--5712021	15	2.1	15	100	0	62	48	25	6	19	1.72
5718067--5718092	2	13.0	2	100	0	52	50	0	0	50	1.00
5721799--5721855	29	2.0	28	83	10	71	43	8	1	45	1.45
5723238--5723396	42	3.8	42	93	0	273	44	15	12	27	1.83
5735543--5735591	11	4.5	11	87	12	75	67	0	0	32	0.91
5735551--5735605	11	5.5	10	89	6	60	67	3	0	29	1.08
5736166--5736215	18	2.8	17	84	6	55	50	2	2	46	1.24
5743295--5743334	21	2.0	21	90	5	64	45	0	10	45	1.37
5743602--5743646	3	15.0	3	100	0	90	33	33	0	33	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141