genome.fa.s1.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  117  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37433852--37433882	12	2.6	12	94	0	53	38	0	9	51	1.35
37436224--37436296	34	2.2	34	82	2	85	42	26	8	23	1.82
37437682--37437730	10	4.7	11	76	20	52	18	4	0	77	0.92
37437679--37437734	16	3.2	16	83	16	60	19	3	0	76	0.93
37437693--37437733	20	2.1	19	90	4	64	21	2	0	75	0.92
37437884--37437930	19	2.5	19	96	0	85	38	42	4	14	1.66
37439769--37439797	10	2.9	10	100	0	58	17	10	0	72	1.11
37442343--37442368	11	2.4	11	100	0	52	15	0	0	84	0.62
37443599--37443655	23	2.5	23	82	0	69	54	19	1	24	1.54
37443586--37443726	70	2.0	70	82	9	171	44	20	7	26	1.79
37444821--37445440	159	3.9	160	92	2	989	20	40	10	28	1.86
37446376--37446424	24	2.0	24	100	0	98	36	8	4	51	1.51
37446690--37446728	20	2.0	20	94	0	69	43	2	7	46	1.46
37453376--37453428	25	2.2	25	83	16	67	35	18	22	22	1.95
37455266--37455322	9	6.6	9	73	15	57	73	1	1	22	1.02
37455270--37455320	25	2.0	25	85	7	68	76	1	1	19	0.98
37455267--37455384	16	7.1	16	69	12	69	71	1	5	22	1.15
37455349--37455382	4	8.5	4	87	12	52	73	0	2	23	0.97
37455267--37455382	15	7.7	15	68	22	57	70	1	5	22	1.16
37455266--37455382	20	5.8	19	67	27	64	70	1	5	23	1.17
37467247--37467301	21	2.8	20	80	5	67	30	0	25	43	1.55
37467252--37467301	14	3.7	14	78	7	50	28	0	26	46	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37467397--37467454	21	2.8	22	79	10	59	20	3	25	50	1.64
37467502--37467539	14	2.7	15	84	12	53	26	0	23	50	1.50
37467682--37467788	7	15.3	7	73	13	60	17	0	29	51	1.52
37467848--37467912	27	2.4	28	84	10	89	20	0	23	56	1.42
37467863--37467922	28	2.2	27	84	3	75	20	1	23	55	1.53
37468156--37468184	14	2.1	14	93	6	51	10	0	34	55	1.34
37468643--37468684	20	2.1	20	86	8	59	16	4	33	45	1.69
37468643--37468856	27	8.1	27	64	21	78	18	3	29	48	1.64
37468776--37468814	14	2.8	14	80	0	51	20	0	33	46	1.51
37468846--37468898	21	2.5	22	76	14	58	15	7	28	49	1.71
37469231--37469275	14	3.3	14	81	3	56	20	6	33	40	1.78
37470410--37470434	12	2.1	12	100	0	50	24	36	24	16	1.94
37470597--37470681	9	9.4	9	80	5	91	44	22	8	24	1.80
37470790--37470833	18	2.4	18	88	0	61	13	2	43	40	1.57
37474677--37474722	24	1.9	24	86	0	65	19	15	41	23	1.89
37475630--37475709	31	2.5	32	85	2	99	40	5	6	48	1.50
37478339--37478573	5	46.8	5	99	0	461	0	60	40	0	0.97
37478953--37478985	7	4.7	7	96	0	57	21	0	30	48	1.50
37483812--37483850	15	2.5	16	83	8	53	43	0	5	51	1.24
37495881--37495935	27	2.0	28	86	6	78	40	3	1	54	1.28
37497674--37497719	24	1.9	24	86	0	65	19	15	41	23	1.89
37498329--37498355	2	13.5	2	100	0	54	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37499250--37499290	20	2.0	22	90	9	68	43	4	0	51	1.23
37499633--37499673	20	2.0	20	85	4	55	51	7	31	9	1.62
37506970--37507008	20	2.0	20	90	10	62	20	2	7	69	1.26
37510818--37510850	16	1.9	17	88	11	50	39	0	30	30	1.57
37512235--37512278	18	2.5	17	79	20	54	43	0	13	43	1.44
37512597--37512662	25	2.6	25	76	9	71	39	12	15	33	1.84
37517248--37517302	22	2.5	22	75	0	56	45	16	18	20	1.86
37517307--37517428	32	3.8	33	82	9	146	36	22	21	20	1.96
37517625--37517686	24	2.6	24	79	2	72	43	17	8	30	1.78
37520610--37520680	22	3.2	22	80	4	63	43	16	21	18	1.88
37520688--37520810	32	3.8	32	73	12	99	36	23	20	19	1.95
37521020--37521065	24	1.9	24	90	0	74	41	21	6	30	1.78
37521089--37521202	27	4.2	27	74	14	92	21	20	19	39	1.93
37526208--37526253	24	1.9	24	86	0	65	19	15	41	23	1.89
37527180--37527220	15	2.7	15	88	3	55	46	2	2	48	1.28
37532685--37532919	41	5.7	41	82	6	253	29	25	22	22	1.99
37535980--37536018	19	2.1	18	85	4	51	28	2	5	64	1.28
37538678--37538709	16	1.9	17	93	6	57	68	0	9	21	1.17
37544788--37544870	31	2.7	31	77	3	89	37	16	13	32	1.88
37544885--37544923	19	2.0	20	90	5	62	20	7	20	51	1.72
37549930--37549967	17	2.2	17	90	0	58	0	15	0	84	0.63
37554392--37554543	53	2.9	52	84	2	196	41	14	8	35	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37556142--37556198	26	2.2	26	81	9	64	49	10	10	29	1.71
37557988--37558105	63	1.9	61	86	5	166	50	4	2	42	1.35
37558020--37558067	22	2.1	24	84	7	64	50	4	2	43	1.33
37559602--37559647	9	5.1	9	94	0	83	45	13	10	30	1.77
37563267--37563404	67	2.1	67	97	0	258	15	5	21	57	1.58
37569548--37569604	29	2.0	29	85	0	78	33	8	26	31	1.87
37569506--37569636	70	1.9	70	91	0	217	38	12	20	29	1.89
37573777--37573815	3	13.3	3	94	5	71	30	0	0	69	0.89
37574098--37574128	15	2.1	15	93	0	53	19	9	0	70	1.14
37583142--37583167	3	8.7	3	100	0	52	34	0	0	65	0.93
37588013--37588171	79	2.0	78	86	1	219	37	4	11	46	1.60
37594413--37594458	5	9.4	5	81	15	53	56	2	0	41	1.11
37594424--37594492	28	2.5	28	77	15	72	53	1	1	43	1.18
37596447--37596480	17	1.9	18	88	5	52	47	2	0	50	1.16
37596635--37596675	19	2.2	19	86	8	57	46	7	0	46	1.30
37600353--37600470	62	1.9	62	96	0	218	47	11	16	24	1.80
37611780--37611869	45	2.0	45	91	0	144	33	20	22	24	1.97
37615718--37615831	22	4.9	22	75	14	63	21	26	20	31	1.98
37616002--37616069	20	3.4	20	75	4	66	33	5	19	41	1.75
37616418--37616442	2	12.5	2	100	0	50	52	0	0	48	1.00
37616998--37617022	13	1.9	13	100	0	50	48	0	16	36	1.46
37619539--37619599	21	2.8	21	90	5	95	31	27	27	13	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37619581--37619635	23	2.4	23	87	0	74	34	21	20	23	1.97
37620321--37620345	11	2.3	11	100	0	50	28	20	0	52	1.47
37621133--37621164	12	2.6	13	85	14	50	0	0	18	81	0.70
37621202--37621234	13	2.4	14	90	10	50	63	0	3	33	1.10
37622237--37622298	25	2.5	25	81	5	72	16	20	22	40	1.91
37622362--37622439	26	3.0	26	80	9	70	21	20	20	37	1.95
37628475--37628658	47	3.9	47	100	0	368	50	15	8	26	1.73
37630048--37630074	13	2.1	13	100	0	54	33	14	0	51	1.43
37631221--37631279	22	2.6	22	76	10	57	28	0	5	66	1.13
37633217--37633265	25	2.0	25	100	0	98	20	8	30	40	1.81
37635372--37635524	43	3.6	43	86	0	209	26	26	17	30	1.97
37641816--37641861	3	15.3	3	81	0	56	34	0	34	30	1.58
37645337--37645363	2	13.5	2	100	0	54	48	0	0	51	1.00
37648846--37648917	23	3.2	23	63	21	62	52	13	22	11	1.72
37648839--37648926	44	2.0	44	100	0	176	50	15	22	11	1.76
37650092--37650781	345	2.0	345	99	0	1353	29	23	15	31	1.95
37655456--37655510	21	2.6	21	88	0	83	27	9	34	29	1.87
37657957--37658093	70	2.0	70	95	0	247	28	17	13	40	1.88
37658055--37658131	38	2.0	38	100	0	154	28	15	14	41	1.86
37657985--37658202	108	2.0	108	90	3	341	28	16	14	41	1.87
37664193--37664218	13	2.0	13	100	0	52	7	92	0	0	0.39
37664192--37664222	14	2.2	14	94	0	53	9	90	0	0	0.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37669626--37669855	114	2.0	114	96	0	424	21	20	18	39	1.93
37674036--37674092	17	3.5	17	85	4	64	8	17	35	38	1.81
37674051--37674094	15	2.8	16	89	6	63	13	20	36	29	1.91
37675801--37675867	34	1.9	35	87	3	100	31	8	14	44	1.76
37682157--37682192	18	2.0	18	88	0	54	44	11	11	33	1.75
37686922--37686962	14	2.7	15	88	7	57	65	4	4	24	1.32
37686965--37687063	28	3.4	28	86	6	119	34	15	3	47	1.61
37687025--37687081	29	1.9	30	85	3	80	38	15	3	42	1.65
37687451--37687527	12	7.4	10	73	15	50	70	1	28	0	0.96
37687451--37687525	28	2.6	28	82	14	91	70	1	28	0	0.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141