genome.fa.s1.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  13  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4128872--4128930	29	2.0	29	83	3	73	32	10	11	45	1.74
4129534--4129580	20	2.3	21	82	13	62	59	0	0	40	0.97
4134872--4134991	35	3.4	35	75	6	109	31	18	23	26	1.97
4135466--4135564	28	3.5	28	78	8	103	38	22	21	18	1.93
4135571--4135636	28	2.4	28	87	7	91	31	15	31	21	1.94
4139289--4139330	21	2.0	22	86	9	61	23	9	4	61	1.45
4142215--4142322	50	2.1	52	94	5	202	45	12	8	34	1.71
4142229--4142314	26	3.4	26	68	18	81	46	11	6	34	1.67
4149000--4149219	109	2.0	110	99	0	433	47	15	5	31	1.67
4153033--4153178	65	2.2	65	92	0	238	46	27	10	15	1.78
4153585--4153611	10	2.7	10	100	0	54	0	29	18	51	1.46
4155773--4155978	103	2.0	103	94	0	358	30	19	13	36	1.90
4161369--4161512	50	2.9	50	84	1	173	25	22	30	21	1.99
4161384--4161554	50	3.4	49	80	5	148	27	21	28	22	1.99
4161742--4161771	12	2.5	12	94	0	51	46	6	30	16	1.73
4163871--4164001	28	4.6	28	80	0	145	34	16	22	26	1.95
4163871--4164001	56	2.3	57	88	1	183	34	16	22	26	1.95
4167212--4167263	25	2.2	23	78	15	61	42	13	7	36	1.73
4168983--4169015	17	1.9	17	93	0	57	15	9	60	15	1.58
4169472--4169548	6	12.7	6	80	2	55	70	1	6	22	1.18
4169475--4169511	11	3.3	11	88	7	56	67	0	2	29	1.04
4170883--4170911	11	2.5	12	88	11	51	24	0	6	68	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4174034--4174077	18	2.4	18	92	0	70	20	27	22	29	1.99
4175978--4176004	5	5.4	5	100	0	54	81	0	0	18	0.69
4184388--4184442	21	2.7	19	76	15	56	29	7	5	58	1.48
4184426--4184617	77	2.7	71	80	17	218	35	7	3	54	1.44
4184494--4184622	38	3.3	40	66	19	117	34	8	3	53	1.47
4184483--4184638	77	2.0	78	98	1	305	37	7	3	51	1.47
4187311--4187388	41	2.0	38	87	7	111	35	7	1	55	1.37
4187384--4187425	17	2.4	17	84	11	50	19	7	2	71	1.20
4197164--4197288	46	2.8	44	81	4	124	43	20	24	12	1.86
4198503--4199078	45	12.9	44	74	4	408	28	18	24	28	1.98
4198544--4198947	88	4.5	88	80	4	350	29	18	23	28	1.98
4198489--4199078	223	2.7	221	82	1	669	29	17	24	28	1.97
4198480--4199162	311	2.2	311	89	0	1008	29	17	24	28	1.98
4198986--4199122	43	3.1	43	66	8	123	28	19	26	25	1.99
4198949--4199119	88	1.9	88	92	0	288	26	19	26	27	1.99
4199095--4199246	81	1.9	81	91	0	250	29	17	30	22	1.96
4199391--4199659	45	6.0	43	76	7	216	31	18	21	28	1.97
4199479--4199893	225	1.8	227	82	6	536	34	20	18	26	1.96
4200406--4200514	45	2.5	45	83	5	125	27	21	22	28	1.99
4200448--4200550	45	2.3	45	83	3	118	26	22	20	31	1.98
4201126--4201394	45	6.0	45	90	1	423	30	24	16	28	1.97
4206238--4206366	50	2.6	49	81	6	145	29	21	25	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4220989--4221013	6	4.2	6	100	0	50	64	16	20	0	1.30
4223752--4223810	29	2.0	30	90	3	93	30	1	10	57	1.42
4227482--4227665	41	4.5	41	80	2	199	34	14	27	22	1.94
4227511--4227665	82	1.9	82	87	0	229	36	14	27	21	1.92
4229477--4229550	35	2.1	35	85	9	98	45	13	9	31	1.75
4229887--4229928	19	2.2	19	83	8	50	26	16	9	47	1.77
4247829--4247858	13	2.3	13	100	0	60	26	30	0	43	1.55
4248386--4248429	23	1.9	22	82	17	54	36	25	0	38	1.56
4248473--4248562	45	2.0	45	91	0	144	33	24	16	25	1.96
4248609--4248750	51	2.8	51	84	3	180	31	25	17	25	1.97
4254088--4254175	45	2.0	45	90	0	140	34	21	17	27	1.95
4254177--4254371	51	3.9	50	77	4	187	32	27	16	23	1.96
4263102--4263161	26	2.4	25	83	8	68	48	1	5	45	1.34
4263429--4263494	13	5.1	13	79	0	78	30	6	24	39	1.79
4263431--4263494	26	2.5	26	84	0	92	31	6	23	39	1.79
4276094--4276143	25	2.0	25	100	0	100	48	16	12	24	1.79
4278203--4278228	13	2.0	13	100	0	52	38	7	30	23	1.83
4291581--4291872	42	6.9	42	87	4	342	23	16	22	36	1.94
4310252--4310446	50	3.9	50	81	2	205	26	21	29	23	1.99
4336496--4336542	20	2.3	21	75	10	53	29	12	25	31	1.93
4340452--4340488	19	1.9	19	88	0	56	13	2	5	78	1.03
4349861--4349986	43	3.0	42	77	2	128	26	13	29	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4355758--4355792	16	2.2	16	100	0	70	28	17	5	48	1.69
4357258--4357378	43	2.9	42	74	7	111	30	14	26	28	1.95
4385754--4385784	15	2.1	15	93	0	53	29	0	6	64	1.18
4392854--4392923	35	2.0	35	100	0	140	28	20	8	42	1.81
4393131--4393234	43	2.4	43	85	10	133	31	25	14	28	1.95
4395578--4395613	14	2.6	14	100	0	72	61	27	5	5	1.41
4400817--4400910	37	2.5	38	86	8	140	43	15	15	24	1.86
4403462--4403552	45	2.0	45	97	0	173	31	21	16	29	1.95
4405473--4405561	45	2.0	45	95	0	160	32	24	17	24	1.97
4405573--4405757	51	3.7	50	73	5	185	32	25	17	24	1.97
4408451--4408739	50	5.7	50	75	9	205	23	28	21	26	1.99
4408555--4408738	105	1.8	100	83	8	244	22	30	21	25	1.98
4417577--4417632	18	3.0	20	68	26	59	14	23	0	62	1.31
4432842--4432885	21	2.1	21	95	0	79	27	13	15	43	1.85
4439317--4439433	30	3.9	30	72	8	94	23	22	13	40	1.90
4439487--4439584	29	3.4	29	80	5	101	26	26	11	35	1.90
4439504--4439582	28	2.8	29	86	3	115	24	27	13	34	1.93
4441686--4441886	102	2.0	102	87	5	291	42	24	11	20	1.85
4442754--4442945	61	3.2	60	72	16	180	22	23	13	40	1.89
4442787--4442980	30	6.4	29	70	17	85	23	24	11	39	1.88
4442735--4443005	120	2.3	121	87	2	386	24	24	12	38	1.91
4442787--4442988	61	3.4	59	74	14	171	23	24	12	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4447863--4448078	50	4.2	50	82	3	225	26	19	28	25	1.99
4447911--4448097	100	1.9	100	82	0	239	28	19	28	23	1.98
4455411--4455449	20	2.0	20	90	10	62	56	10	23	10	1.63
4459305--4459485	51	3.6	52	78	9	187	23	16	27	33	1.95
4464835--4465019	101	1.8	102	87	8	279	24	17	26	31	1.97
4464827--4465017	51	3.8	51	74	16	175	24	17	27	30	1.97
4464941--4465021	26	3.2	26	62	28	64	24	14	27	33	1.95
4465023--4465122	46	2.2	43	79	11	103	24	17	25	34	1.96
4465205--4465248	22	2.0	23	81	4	54	38	0	25	36	1.56
4471063--4471225	30	5.4	30	81	3	184	38	12	25	23	1.90
4471062--4471254	90	2.1	90	87	1	271	40	12	24	22	1.88
4471116--4471256	30	4.8	29	73	6	77	40	11	25	22	1.87
4473892--4474111	48	4.6	48	88	4	318	27	21	27	23	1.99
4473892--4474157	48	5.5	48	86	1	309	27	21	27	24	1.99
4473892--4474157	144	1.8	144	86	0	388	27	21	27	24	1.99
4478959--4479052	43	2.2	43	84	0	116	19	29	28	22	1.98
4484773--4484838	33	2.0	33	93	0	114	22	19	33	24	1.97
4501136--4501254	59	2.0	59	98	0	229	45	13	10	30	1.78
4511544--4511581	19	2.0	19	85	10	51	55	5	0	39	1.23
4512239--4512271	11	3.2	11	87	12	52	24	0	9	66	1.20
4521587--4521921	39	8.5	39	84	3	413	30	4	21	43	1.73
4521588--4521964	79	4.8	80	88	2	419	30	4	22	42	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4521619--4521960	118	2.9	117	82	5	397	29	4	23	42	1.75
4536312--4536356	21	2.2	20	92	4	72	35	20	15	28	1.93
4541077--4541101	13	1.9	13	100	0	50	8	0	24	68	1.16
4555312--4555356	22	2.1	21	84	12	56	42	2	0	55	1.12
4560627--4560905	27	10.4	27	76	5	226	42	19	18	18	1.89
4560627--4560903	81	3.5	79	77	7	256	42	19	18	18	1.89
4561252--4561355	28	3.7	28	88	2	138	19	25	27	27	1.98
4561249--4561355	56	1.9	56	86	3	153	18	25	28	27	1.98
4568125--4568212	27	3.3	26	81	9	99	47	17	18	17	1.83
4568147--4568249	27	3.9	26	74	12	77	43	17	20	18	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141