genome.fa.s1.2.7.7.80.10.50.1000.34.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  34  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11319485--11319517	15	2.2	15	94	0	57	15	9	12	63	1.51
11324559--11324615	6	9.2	6	81	7	60	14	5	5	75	1.15
11324640--11324694	3	18.3	3	100	0	110	32	0	0	67	0.91
11329015--11329086	34	2.2	33	89	2	108	72	11	9	6	1.29
11329016--11329093	40	2.0	38	82	9	95	71	11	10	6	1.29
11329914--11329949	14	2.5	15	86	13	58	69	0	16	13	1.19
11331269--11331682	44	9.0	44	67	15	183	33	17	21	28	1.96
11331257--11331682	186	2.3	186	90	0	663	33	17	21	27	1.96
11331453--11331738	142	2.0	142	91	0	464	32	16	22	28	1.95
11331793--11332413	100	6.2	100	89	1	917	32	23	21	23	1.98
11331815--11332393	50	11.6	50	73	3	432	32	23	20	23	1.98
11333774--11333830	6	9.2	6	77	7	51	15	5	5	73	1.19
11333856--11333909	3	18.0	3	100	0	108	33	0	0	66	0.92
11333907--11333954	21	2.3	21	81	0	51	29	8	0	62	1.24
11334113--11334228	59	2.0	58	98	1	223	22	8	16	52	1.70
11341148--11341195	20	2.5	18	80	12	51	50	12	4	33	1.59
11341368--11341412	20	2.2	20	84	4	54	46	11	2	40	1.52
11341177--11341460	148	1.9	147	89	5	437	43	9	4	42	1.55
11341166--11341482	150	2.1	147	85	7	433	45	9	3	41	1.55
11342285--11342547	42	6.3	42	85	0	364	37	21	19	21	1.95
11342932--11342969	12	3.2	12	81	7	51	5	18	5	71	1.25
11356404--11356504	18	5.2	21	62	18	65	46	20	2	29	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11356386--11356505	38	3.2	38	98	0	231	46	21	3	28	1.67
11374569--11374607	20	1.9	21	84	5	53	30	28	2	38	1.70
11374798--11374827	11	2.7	11	94	0	51	30	26	0	43	1.55
11379459--11379769	43	7.3	43	81	3	283	26	25	18	29	1.98
11379459--11379769	86	3.6	84	84	3	354	26	25	18	29	1.98
11385681--11385814	9	15.4	9	75	16	106	30	0	17	51	1.50
11385685--11385750	25	2.6	25	92	0	114	34	0	19	45	1.51
11385724--11385898	34	5.3	34	69	18	111	26	1	17	54	1.52
11385758--11385908	44	3.2	44	68	20	126	27	1	15	54	1.53
11385799--11385838	12	3.3	12	78	0	53	32	2	17	47	1.61
11385732--11385932	96	2.1	93	89	2	303	27	1	17	53	1.52
11385888--11385949	12	5.5	11	87	11	74	29	1	16	53	1.52
11385895--11385949	12	4.8	12	88	4	78	29	1	16	52	1.54
11385888--11385956	24	3.0	24	87	8	92	27	1	17	53	1.52
11385908--11385962	24	2.5	22	85	8	67	27	1	21	49	1.60
11386092--11386145	15	3.1	18	74	17	60	57	1	0	40	1.09
11386910--11386972	33	2.0	31	84	9	83	55	22	3	19	1.57
11388642--11388687	15	3.1	15	79	17	60	34	39	2	23	1.67
11388642--11388683	14	2.9	14	80	16	50	35	35	2	26	1.70
11389360--11390087	208	3.5	208	88	1	1041	29	21	18	30	1.97
11390623--11390670	22	2.1	23	84	3	62	39	2	0	58	1.10
11394528--11394562	17	2.1	17	94	0	61	25	11	8	54	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11404867--11404955	27	3.2	27	80	6	90	25	17	4	51	1.64
11404894--11404962	29	2.5	26	79	9	66	24	15	2	56	1.53
11415748--11415827	41	2.0	40	87	2	115	25	20	25	30	1.99
11416087--11416148	31	2.0	31	96	0	115	25	17	12	43	1.85
11423833--11424066	50	4.7	50	83	2	258	28	21	27	22	1.99
11428046--11429415	684	2.0	684	100	0	2740	35	22	12	29	1.91
11450311--11450375	33	2.0	33	84	0	85	35	16	24	23	1.95
11450578--11450641	22	3.0	21	79	6	58	43	17	20	18	1.88
11450633--11450803	32	5.4	32	81	6	195	38	19	19	22	1.93
11450633--11450803	64	2.7	64	87	5	231	38	19	19	22	1.93
11450802--11450859	26	2.2	26	78	0	62	34	22	20	22	1.97
11450975--11451104	24	5.4	23	82	8	95	45	23	6	24	1.76
11450990--11451104	48	2.4	46	80	8	122	45	25	6	23	1.76
11451176--11451250	27	2.8	27	81	2	98	26	24	17	32	1.97
11451165--11451270	26	4.0	27	81	2	108	27	22	16	33	1.96
11451261--11451486	27	8.4	27	83	2	258	23	16	18	41	1.90
11451261--11451486	81	2.8	81	85	2	294	23	16	18	41	1.90
11457131--11457168	18	2.2	18	90	9	62	71	2	5	21	1.19
11460480--11462136	416	4.0	416	95	0	2942	40	10	20	29	1.85
11469352--11469414	30	2.1	30	85	5	83	57	7	17	17	1.63
11470681--11470940	59	4.4	58	86	3	360	34	11	28	25	1.91
11470698--11470940	116	2.1	117	92	0	407	34	11	28	25	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11470724--11470955	29	8.0	29	72	6	173	34	12	28	24	1.92
11474867--11474931	20	3.3	20	70	12	62	27	16	38	16	1.91
11474832--11474944	39	2.9	39	85	0	136	33	16	31	17	1.93
11474859--11474920	19	3.2	19	76	13	72	33	17	32	16	1.92
11478264--11478785	27	19.4	27	84	1	584	43	20	16	19	1.88
11486934--11487172	40	6.0	39	76	3	199	17	27	17	36	1.93
11487569--11487607	19	2.1	19	95	0	69	30	7	25	35	1.84
11491790--11491825	17	2.2	17	95	5	65	19	13	25	41	1.88
11509973--11510016	21	2.1	21	83	8	54	50	2	4	43	1.35
11510044--11510074	16	1.9	16	93	0	53	45	0	3	51	1.17
11511156--11511185	14	2.1	14	100	0	60	33	13	6	46	1.69
11513004--11518371	703	7.6	702	84	2	6484	30	22	13	34	1.92
11518370--11520493	701	3.0	697	84	3	2634	30	22	13	34	1.92
11526501--11526629	43	3.0	43	86	0	177	31	28	18	21	1.97
11530465--11530491	14	1.9	14	100	0	54	7	55	0	37	1.28
11531969--11532289	41	7.9	41	81	5	163	29	31	18	20	1.96
11532009--11532293	41	7.0	41	85	2	331	27	33	18	19	1.96
11532349--11532440	40	2.3	38	78	9	94	23	27	17	31	1.97
11571798--11571841	22	2.0	22	86	4	63	50	0	2	47	1.13
11572915--11573126	102	2.1	102	95	2	381	38	10	12	37	1.79
11580560--11580599	20	2.0	20	85	5	53	45	2	2	50	1.28
11583162--11583226	3	22.3	3	96	3	116	69	30	0	0	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11585246--11585291	15	3.0	15	81	6	56	67	6	2	23	1.25
11589608--11589639	3	11.3	3	93	6	50	71	28	0	0	0.86
11593611--11593646	17	2.1	17	89	0	54	61	8	8	22	1.51
11594036--11594061	6	4.3	6	100	0	52	0	15	0	84	0.62
11594073--11594126	21	2.5	21	81	3	63	20	33	7	38	1.80
11615865--11615912	22	2.2	23	85	7	64	54	0	0	45	0.99
11622997--11623140	31	4.6	30	84	1	162	29	21	4	45	1.70
11622997--11623144	62	2.4	62	90	2	217	29	22	4	43	1.71
11623167--11623226	5	11.2	5	77	12	57	35	21	1	41	1.63
11624709--11624745	9	4.1	9	89	0	56	32	10	10	45	1.74
11624798--11624828	9	3.4	9	90	0	53	38	22	12	25	1.90
11629061--11629103	15	2.8	16	80	16	54	46	6	4	41	1.51
11629200--11629319	59	2.1	59	95	1	215	44	4	5	45	1.47
11632582--11632610	6	4.8	6	100	0	58	65	17	0	17	1.27
11632650--11632725	9	8.4	9	79	5	91	26	7	25	40	1.82
11632650--11632725	18	4.2	18	87	0	107	26	7	25	40	1.82
11632650--11632725	36	2.1	36	90	4	118	26	7	25	40	1.82
11633811--11633885	22	3.3	22	75	7	71	26	32	20	21	1.97
11635920--11635991	21	3.2	21	70	21	56	44	0	12	43	1.42
11635908--11636076	52	3.3	49	74	12	151	44	1	14	40	1.52
11635867--11636272	107	3.8	106	85	2	530	43	1	12	42	1.51
11636155--11636224	26	2.6	27	76	10	65	47	0	7	45	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11635878--11636272	53	7.5	52	72	17	271	43	1	11	42	1.50
11640897--11640930	18	1.9	18	88	5	52	29	0	5	64	1.17
11640986--11641028	22	2.0	20	82	8	50	60	0	0	39	0.97
11645729--11645872	22	6.4	22	73	13	114	40	22	11	25	1.87
11645777--11646050	69	4.0	69	86	0	343	38	18	12	30	1.88
11645916--11646006	22	4.0	22	71	13	85	36	21	14	27	1.92
11646254--11646300	24	2.0	24	95	0	85	51	21	4	23	1.65
11646717--11646799	43	1.9	43	92	0	139	28	30	15	25	1.96
11650440--11650464	2	12.5	2	100	0	50	52	0	0	48	1.00
11658122--11659152	74	14.0	74	90	1	1572	25	9	27	37	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141