genome.fa.s1.2.7.7.80.10.50.1000.47.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  47  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14886842--14886883	15	2.9	14	83	13	50	0	9	2	88	0.61
14886905--14886944	1	40.0	1	94	0	71	0	0	2	97	0.17
14891871--14891913	2	21.5	2	90	0	68	46	2	0	51	1.13
14903027--14903054	2	14.0	2	100	0	56	50	0	0	50	1.00
14911659--14911689	9	3.4	9	90	0	53	25	12	22	38	1.90
14911743--14911779	9	4.1	9	92	0	65	45	13	10	29	1.77
14912655--14912680	5	5.2	5	100	0	52	19	19	19	42	1.90
14915924--14916114	98	1.9	98	85	4	260	34	17	10	38	1.84
14922463--14922507	19	2.4	19	92	0	72	37	31	6	24	1.81
14922560--14922602	22	2.0	22	90	0	68	34	13	18	32	1.90
14925920--14925990	28	2.5	28	83	0	79	18	28	33	19	1.95
14929045--14929149	29	3.6	29	69	5	86	39	18	22	20	1.93
14940616--14940704	46	2.0	44	93	4	151	24	5	30	39	1.78
14940614--14940724	46	2.6	42	81	15	147	27	4	31	36	1.77
14942269--14942372	49	2.1	49	87	0	145	50	9	8	30	1.65
14944495--14944611	29	4.1	29	72	18	120	29	8	7	53	1.59
14950810--14950851	14	2.8	15	78	10	50	16	38	4	40	1.70
14962431--14962464	16	2.1	16	88	0	50	17	8	5	67	1.37
14963553--14963601	25	2.0	25	95	0	89	32	4	14	48	1.62
14964135--14964159	12	2.1	12	100	0	50	52	0	0	48	1.00
14964146--14964190	20	2.2	21	92	7	76	42	0	8	48	1.34
14966596--14966713	61	2.0	60	83	8	152	50	3	2	44	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14966687--14966723	17	2.1	18	90	5	58	48	0	0	51	1.00
14966690--14966723	12	3.0	12	91	8	54	47	0	0	52	1.00
14967299--14967332	13	2.7	13	95	4	61	38	11	0	50	1.39
14977473--14977548	27	2.8	28	80	17	88	42	2	1	53	1.23
14978062--14978130	29	2.4	29	97	0	129	33	7	11	47	1.67
14989719--14989755	14	2.5	15	87	12	51	64	0	5	29	1.15
14990083--14990161	31	2.6	29	80	6	86	35	3	11	49	1.57
14990082--14990157	29	2.5	31	78	4	84	35	3	10	50	1.56
14994005--14994200	98	2.0	98	90	0	311	34	20	15	29	1.94
14999636--14999673	13	3.0	12	88	11	58	34	0	2	63	1.09
15005042--15005384	114	3.0	114	97	0	643	30	23	12	33	1.92
15011434--15011713	139	2.0	140	99	0	553	51	6	8	33	1.58
15014792--15015278	242	2.0	242	96	0	902	31	22	13	32	1.93
15019968--15020195	2	116.5	2	74	7	164	42	0	56	0	1.08
15022657--15022717	31	2.0	31	96	0	113	21	18	18	42	1.89
15023228--15023260	17	1.9	17	93	0	57	78	3	3	15	0.99
15023234--15023275	21	2.0	21	86	9	59	73	4	4	16	1.17
15024508--15024612	23	4.6	23	84	0	129	28	25	22	22	1.99
15024515--15024612	46	2.1	46	92	0	160	29	25	22	22	1.99
15027209--15027235	2	13.5	2	100	0	54	51	0	0	48	1.00
15031792--15031862	4	17.0	4	77	13	72	70	1	4	23	1.13
15031790--15031845	21	2.7	21	86	8	78	75	1	3	19	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15031792--15031854	25	2.5	25	89	7	92	71	1	4	22	1.13
15031809--15031862	17	3.5	16	78	17	60	70	0	3	25	1.04
15039620--15039645	12	2.2	12	100	0	52	23	34	26	15	1.94
15039804--15039949	9	16.2	9	100	0	292	34	32	10	21	1.89
15040054--15040202	30	5.0	30	85	0	199	32	14	17	36	1.90
15040802--15040841	21	2.0	21	90	5	64	32	0	32	35	1.58
15042752--15042883	43	3.1	42	79	7	133	31	27	17	23	1.97
15042752--15042862	42	2.6	43	81	4	127	30	28	17	23	1.97
15049207--15049236	2	15.0	2	100	0	60	0	50	0	50	1.00
15051007--15051050	22	2.0	22	82	13	54	50	29	6	13	1.68
15059575--15059623	24	2.0	24	100	0	98	34	16	24	24	1.95
15066604--15066636	1	33.0	1	93	0	57	0	3	0	96	0.20
15075503--15075536	18	1.9	18	88	5	52	61	0	0	38	0.96
15075511--15075560	18	2.5	20	79	17	59	58	2	2	38	1.21
15075510--15075554	21	2.1	22	87	4	65	55	2	2	40	1.24
15078556--15078664	22	5.0	21	75	9	76	17	29	18	34	1.94
15080997--15081029	10	3.3	10	87	12	50	24	0	27	48	1.51
15083798--15083848	23	2.2	23	89	6	77	41	19	9	29	1.84
15094945--15094987	23	1.9	23	90	4	70	39	18	4	37	1.72
15096965--15097032	29	2.3	29	94	0	118	32	22	19	26	1.97
15096994--15097195	49	4.1	49	87	3	255	33	19	17	30	1.95
15097923--15097951	14	2.0	15	93	6	51	68	3	0	27	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15103116--15103158	23	1.9	23	85	4	61	37	16	4	41	1.69
15105048--15105111	33	1.9	33	90	0	101	57	9	14	18	1.63
15105192--15105229	19	2.0	19	100	0	76	36	10	21	31	1.87
15108604--15108640	20	1.9	19	89	10	58	43	0	32	24	1.55
15108937--15108973	9	4.1	9	92	0	65	29	10	13	45	1.77
15109024--15109054	9	3.4	9	90	0	53	38	22	12	25	1.90
15109266--15109324	21	2.8	21	77	10	66	30	27	20	22	1.98
15110018--15110105	42	2.1	43	85	6	117	47	1	21	29	1.58
15112619--15112664	24	1.9	24	82	8	58	21	13	30	34	1.91
15114927--15115028	27	3.8	27	77	5	98	28	19	17	34	1.95
15118782--15118839	19	2.8	21	76	12	75	24	12	29	34	1.91
15121171--15121473	149	2.0	150	99	0	599	34	9	13	43	1.76
15125464--15125598	43	3.2	43	80	4	121	28	18	22	29	1.98
15125489--15125598	43	2.6	43	83	1	141	30	20	23	26	1.98
15127510--15127644	43	3.2	43	80	4	121	28	18	22	29	1.98
15127535--15127644	43	2.6	43	83	1	141	30	20	23	26	1.98
15133198--15133254	24	2.4	24	84	0	69	35	22	21	21	1.96
15133354--15133442	38	2.4	37	84	3	115	33	12	22	31	1.91
15139254--15139317	26	2.5	26	89	5	94	25	3	0	71	1.00
15139254--15139315	13	4.8	13	76	7	63	25	3	0	70	1.02
15139284--15139473	85	2.2	86	95	4	343	34	5	4	55	1.43
15142166--15142214	25	2.0	25	95	0	89	48	20	14	16	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15146540--15146800	86	3.0	88	88	1	373	37	10	6	45	1.65
15147505--15147553	25	2.0	24	92	4	80	40	2	0	57	1.10
15147569--15147646	23	3.5	22	80	14	81	35	3	1	58	1.24
15147590--15147644	21	2.7	20	82	17	76	36	1	1	60	1.18
15149574--15149709	53	2.5	55	86	4	204	41	17	11	30	1.84
15149574--15149727	53	2.8	53	85	2	200	38	17	13	29	1.88
15151713--15151792	31	2.5	31	80	6	81	27	6	5	61	1.41
15152734--15152871	55	2.6	53	85	4	172	24	23	21	30	1.99
15152836--15153030	56	3.5	55	82	2	257	28	14	23	32	1.94
15153088--15153305	91	2.4	91	99	0	427	37	16	20	25	1.93
15155946--15155970	7	3.6	7	100	0	50	88	0	0	12	0.53
15167786--15168323	104	5.2	104	83	3	611	30	19	15	34	1.93
15171241--15171339	29	3.5	28	73	10	78	60	2	4	33	1.27
15173399--15173430	13	2.5	13	94	0	55	56	3	6	34	1.40
15187034--15187072	20	2.0	20	94	0	69	30	17	17	33	1.94
15189291--15189331	22	1.9	21	85	5	55	65	0	17	17	1.27
15194461--15194499	18	2.1	19	85	4	53	51	2	2	43	1.29
15204468--15204710	115	2.1	113	79	8	265	39	6	11	41	1.68
15208592--15208646	29	1.9	28	85	3	74	70	1	14	12	1.24
15212514--15212585	27	2.7	27	80	0	90	26	33	31	8	1.86
15212802--15212902	10	10.1	10	100	0	202	70	0	0	29	0.88
15213096--15213467	160	2.3	162	89	2	561	26	8	8	56	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15213453--15213485	17	1.9	17	93	0	57	9	9	6	75	1.18
15214724--15214778	21	2.7	21	81	15	55	60	1	5	32	1.30
15216540--15216568	14	2.0	15	93	6	51	13	0	31	55	1.39
15217204--15217259	20	2.8	20	77	0	67	39	7	1	51	1.40
15217236--15217376	75	1.9	73	83	12	180	41	8	1	48	1.42
15217363--15217400	19	2.0	19	89	0	58	28	5	2	63	1.30
15226189--15226216	5	5.6	5	100	0	56	21	0	35	42	1.53
15227070--15227096	2	13.5	2	100	0	54	48	0	0	51	1.00
15231164--15231228	29	2.2	29	94	0	112	26	29	23	21	1.99
15231164--15231239	29	2.6	29	89	4	100	26	32	21	19	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141