genome.fa.s1.2.7.7.80.10.50.1000.55.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  55  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17957744--17957779	17	2.1	17	89	5	54	19	2	11	66	1.35
17961362--17961404	21	2.0	21	86	8	61	34	0	6	58	1.25
17961387--17961462	35	2.2	33	84	9	91	43	1	5	50	1.33
17961417--17961463	23	2.1	22	84	4	58	46	0	4	48	1.21
17961675--17961713	16	2.4	16	100	0	78	28	28	7	35	1.85
17983703--17983870	69	2.4	69	81	3	187	19	22	21	36	1.95
17986009--17986048	21	1.9	21	94	0	71	22	32	7	37	1.82
17986452--17986547	40	2.4	40	82	6	113	37	16	18	27	1.92
17989649--17989792	66	2.2	66	86	6	193	42	18	23	15	1.88
17990068--17990164	44	2.2	44	85	3	124	32	26	14	25	1.94
17992344--17992382	12	3.0	13	88	11	62	76	7	0	15	0.99
17994387--17994417	9	3.4	9	90	0	53	38	22	12	25	1.90
18005273--18005305	15	2.2	15	94	0	57	48	3	12	36	1.56
18011028--18011058	14	2.2	14	94	0	53	45	12	12	29	1.80
18046119--18046155	19	1.9	19	94	0	65	56	8	13	21	1.63
18048871--18048922	26	2.0	26	100	0	104	26	15	26	30	1.96
18058849--18058873	3	8.3	3	100	0	50	68	0	0	32	0.90
18071007--18071041	18	1.9	18	94	0	61	5	20	5	68	1.31
18071682--18071718	17	2.1	19	85	10	51	37	10	5	45	1.62
18072175--18072258	30	2.8	30	77	12	82	40	3	20	35	1.70
18072926--18073247	168	1.9	168	96	0	590	43	4	23	28	1.73
18077002--18077124	59	2.1	60	93	1	212	45	5	13	34	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18079385--18079512	25	5.1	25	80	9	118	31	23	19	25	1.98
18081505--18081575	11	6.9	11	80	15	89	54	0	1	43	1.08
18081467--18081624	39	4.0	38	76	12	117	61	0	1	36	1.09
18081508--18081592	9	9.0	9	70	20	50	58	0	1	40	1.05
18081505--18081604	50	2.0	50	92	5	166	57	0	2	41	1.10
18081466--18081619	29	5.1	28	73	16	98	62	0	1	35	1.08
18088502--18088560	26	2.3	26	85	5	75	30	10	13	45	1.76
18098874--18098903	13	2.3	13	100	0	60	60	0	13	26	1.34
18112442--18112659	109	2.0	109	100	0	436	28	26	9	35	1.87
18126007--18126048	17	2.5	17	92	0	66	45	11	0	42	1.41
18133400--18133483	25	3.4	25	83	0	114	28	21	19	30	1.97
18134825--18134921	49	2.0	49	84	8	126	27	24	19	27	1.99
18141498--18141651	25	6.2	26	70	13	83	16	23	19	40	1.91
18141498--18141651	24	6.2	26	67	17	94	16	23	19	40	1.91
18145929--18145977	25	2.0	25	84	15	66	46	14	4	34	1.63
18156102--18156139	14	2.9	14	81	18	55	50	0	0	50	1.00
18156262--18156286	8	3.1	8	100	0	50	24	12	0	64	1.27
18157848--18157881	17	1.9	18	88	5	52	82	2	8	5	0.93
18158760--18159032	100	2.7	100	88	0	420	23	27	22	27	1.99
18158771--18159037	50	5.3	50	72	0	255	23	27	21	27	1.99
18159231--18159545	88	3.6	88	89	0	459	24	27	19	28	1.99
18164298--18164354	27	2.1	27	86	0	78	63	8	12	15	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18172176--18172213	16	2.3	16	83	16	51	81	2	7	7	0.96
18174648--18174701	27	2.1	25	82	6	63	25	1	0	72	0.95
18174604--18174706	35	3.0	34	76	18	97	24	3	0	70	1.09
18187665--18187709	20	2.3	20	85	7	58	28	0	0	71	0.87
18198005--18198073	16	4.3	16	85	7	95	40	5	31	21	1.77
18198005--18198073	32	2.2	32	92	5	113	40	5	31	21	1.77
18198053--18198149	44	2.2	44	85	5	124	30	4	28	36	1.76
18199983--18200017	4	8.8	4	93	0	61	25	2	22	48	1.64
18200990--18201082	46	2.0	46	95	0	168	40	20	12	25	1.88
18202073--18202126	17	3.2	17	76	7	56	61	5	0	33	1.19
18202079--18202128	17	2.9	17	81	3	64	58	6	0	36	1.23
18207230--18207499	43	6.3	43	91	1	416	32	30	17	19	1.95
18207230--18207499	87	3.1	87	90	1	411	32	30	17	19	1.95
18207230--18207499	130	2.1	128	89	1	414	32	30	17	19	1.95
18217867--18217894	10	2.8	10	100	0	56	17	21	17	42	1.89
18223654--18223683	10	3.0	10	100	0	60	50	0	0	50	1.00
18227885--18227983	47	2.1	48	96	1	182	46	0	7	46	1.30
18229031--18229069	7	5.4	7	81	6	51	35	46	0	17	1.49
18229031--18229072	15	2.9	15	89	3	59	35	47	0	16	1.47
18229092--18229129	14	2.7	15	88	12	62	42	31	0	26	1.56
18228283--18229210	319	2.9	315	87	4	1309	42	27	2	28	1.68
18230124--18230201	29	2.6	29	83	4	93	47	14	14	24	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18230149--18230222	29	2.5	29	86	4	94	51	16	12	20	1.76
18230283--18230765	41	11.8	41	83	3	553	33	26	19	19	1.96
18234178--18234246	23	2.8	25	86	10	106	62	10	10	17	1.53
18234452--18234485	8	4.2	8	100	0	68	76	0	0	23	0.79
18237947--18237987	20	2.0	20	100	0	82	26	19	4	48	1.69
18238611--18238679	29	2.4	29	77	0	84	46	14	20	18	1.84
18240000--18240355	42	8.4	42	87	5	461	30	20	21	26	1.98
18240000--18240354	169	2.1	169	86	6	495	30	20	21	26	1.98
18240788--18240869	33	2.5	33	86	4	112	7	39	14	39	1.74
18240838--18240903	21	3.1	21	86	0	87	4	42	18	34	1.70
18249639--18249672	14	2.3	15	85	5	52	35	44	2	17	1.64
18249901--18249929	15	1.9	15	100	0	58	44	34	0	20	1.52
18249953--18250022	21	3.3	21	69	21	56	40	38	0	21	1.54
18249892--18250020	50	2.6	50	79	7	120	42	33	0	23	1.60
18250433--18251299	114	7.6	114	95	0	1380	26	20	19	33	1.97
18251559--18251793	126	1.9	126	90	1	373	35	13	4	46	1.64
18257112--18257147	3	12.0	3	100	0	72	33	0	0	66	0.92
18259637--18259884	124	2.0	124	95	0	451	26	23	15	33	1.95
18266231--18266281	20	2.5	20	83	3	57	43	13	11	31	1.80
18266231--18266291	21	3.0	20	80	4	59	42	14	11	31	1.81
18268125--18268161	19	1.9	19	94	0	65	13	32	0	54	1.40
18272799--18272908	55	2.0	55	94	0	193	29	20	20	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18282605--18282671	28	2.4	28	82	7	75	50	8	1	38	1.43
18285324--18285417	47	2.0	47	95	0	170	48	8	18	24	1.75
18287095--18287147	24	2.2	24	86	3	72	26	24	0	49	1.51
18290999--18291034	18	2.0	18	94	0	63	25	16	19	38	1.92
18295177--18295212	14	2.6	14	86	0	54	72	0	8	19	1.10
18295342--18295386	23	2.0	23	86	8	65	62	13	0	24	1.31
18295763--18295807	17	2.6	17	80	19	58	64	2	4	28	1.25
18304127--18304196	29	2.3	29	80	9	70	57	14	4	24	1.55
18304387--18304425	18	2.0	20	85	9	55	66	7	5	20	1.36
18304495--18304652	84	1.9	85	97	1	300	56	12	5	25	1.57
18305783--18305866	40	2.1	39	85	10	116	60	0	5	33	1.21
18306619--18306677	20	2.7	22	82	12	70	79	5	13	1	0.97
18306613--18306655	11	4.1	11	85	11	63	81	4	13	0	0.84
18306809--18306838	6	5.0	6	100	0	60	0	16	0	83	0.65
18306803--18306838	18	2.0	18	88	0	54	2	13	2	80	0.93
18314820--18314876	28	2.0	28	93	0	96	24	12	17	45	1.83
18325587--18325623	17	2.2	17	100	0	74	27	16	24	32	1.96
18332309--18332370	23	2.5	24	82	15	74	32	20	24	22	1.98
18333441--18333480	19	2.2	18	86	13	55	42	10	2	45	1.51
18337726--18337806	42	1.9	42	94	0	144	48	16	6	29	1.70
18337726--18337819	42	2.2	41	87	5	134	48	15	5	29	1.67
18337837--18337876	19	2.2	18	95	4	71	42	15	2	40	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18342810--18342836	3	9.0	3	100	0	54	33	33	0	33	1.58
18343228--18343267	21	2.0	20	85	14	55	27	12	22	37	1.90
18354323--18354386	22	2.9	23	77	11	62	15	3	42	39	1.63
18371826--18371872	17	2.9	16	84	6	58	63	10	8	17	1.49
18376804--18376829	13	2.0	13	100	0	52	53	0	0	46	1.00
18380065--18380104	20	2.0	20	100	0	80	30	5	5	60	1.40
18383833--18384614	389	2.0	388	86	4	1085	35	15	15	33	1.89
18391810--18391861	27	1.9	27	88	0	77	28	13	36	21	1.91
18394122--18394150	13	2.1	14	93	6	51	68	13	6	10	1.37
18406289--18406326	20	2.0	20	85	10	53	34	0	5	60	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141