genome.fa.s1.2.7.7.80.10.50.1000.35.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  35  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11666059--11666297	94	2.5	94	87	0	334	24	24	17	33	1.96
11666223--11666276	27	2.0	27	85	7	74	25	29	14	29	1.95
11666350--11666378	13	2.1	14	93	6	51	72	3	17	6	1.21
11670829--11670907	39	2.0	39	97	0	149	16	10	20	53	1.71
11672539--11672579	20	2.0	20	90	0	64	43	0	12	43	1.41
11673730--11673770	6	6.5	6	91	8	64	14	17	0	68	1.22
11673677--11673827	69	2.2	69	84	1	187	26	15	3	53	1.60
11673842--11673885	17	2.6	18	82	7	56	20	20	2	56	1.52
11675034--11675077	21	2.3	19	84	11	54	40	25	2	31	1.68
11679484--11679605	43	2.8	43	83	2	147	21	21	22	35	1.96
11684816--11685125	154	2.0	155	95	0	559	30	13	10	45	1.78
11690275--11690312	19	2.0	19	100	0	76	36	5	15	42	1.70
11691893--11692181	142	2.0	143	99	0	571	47	6	6	38	1.57
11693751--11693782	16	2.0	16	93	0	55	71	6	3	18	1.20
11695501--11695546	25	2.0	25	83	12	62	54	17	2	26	1.54
11704543--11704574	13	2.5	13	94	0	55	56	12	0	31	1.37
11704786--11704843	30	1.9	30	92	0	98	32	24	3	39	1.72
11710369--11710412	22	2.0	22	95	0	79	27	13	15	43	1.85
11710803--11710844	1	42.0	1	90	0	66	95	0	4	0	0.28
11717642--11717686	21	2.1	21	88	8	65	68	2	4	24	1.19
11719637--11719684	25	1.9	25	87	8	71	37	0	2	60	1.09
11726670--11726787	39	3.0	39	74	0	119	29	5	22	41	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11732114--11732179	21	3.1	21	65	8	53	46	16	7	28	1.74
11740081--11740107	13	2.1	13	100	0	54	7	22	29	40	1.81
11740627--11741525	44	20.4	44	75	9	602	30	23	15	30	1.95
11740627--11741525	133	6.8	130	77	9	609	30	23	15	30	1.95
11741026--11741393	89	4.1	89	83	4	413	28	23	16	30	1.96
11740753--11741526	177	4.4	177	76	9	493	30	23	15	30	1.95
11749760--11749812	23	2.3	23	100	0	106	30	26	20	22	1.98
11771800--11771856	22	2.6	23	88	8	91	43	19	24	12	1.85
11772777--11772812	17	2.2	17	90	5	56	0	16	5	77	0.94
11772859--11772887	5	5.8	5	100	0	58	58	0	0	41	0.98
11773894--11773992	50	2.0	50	92	4	164	42	11	21	25	1.85
11774678--11774707	2	15.0	2	100	0	60	50	0	0	50	1.00
11776370--11776462	4	23.8	4	93	4	127	25	29	0	45	1.54
11781416--11781480	29	2.2	29	94	0	112	26	26	21	26	2.00
11786781--11786852	34	2.1	34	100	0	144	36	11	19	33	1.87
11787438--11787561	62	2.1	57	86	7	167	52	4	2	40	1.36
11791509--11791546	19	2.0	19	85	10	51	42	0	15	42	1.47
11792202--11792256	23	2.4	24	87	6	78	23	20	20	36	1.95
11792477--11792511	6	5.7	6	90	6	52	51	0	28	20	1.47
11797548--11797588	10	4.4	10	82	17	52	58	0	0	41	0.98
11797761--11797811	22	2.3	22	93	6	86	50	11	13	23	1.74
11809974--11810013	17	2.3	18	86	4	55	55	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11812932--11813086	69	2.2	70	87	3	215	27	21	18	31	1.97
11813663--11814342	340	2.0	340	100	0	1360	34	7	20	38	1.80
11816073--11816609	70	7.7	70	81	3	528	30	21	16	31	1.96
11816071--11816609	140	3.9	140	83	2	620	30	21	16	31	1.96
11816016--11816609	210	2.8	208	82	2	643	30	21	17	31	1.96
11816563--11816662	52	1.9	52	85	4	139	29	22	17	32	1.96
11816682--11816967	58	4.9	58	83	0	302	33	13	13	38	1.85
11830426--11830461	17	2.1	17	100	0	72	41	0	5	52	1.24
11831806--11831863	27	2.1	27	90	0	89	31	13	25	29	1.94
11839799--11839841	20	2.0	22	86	8	63	27	2	16	53	1.55
11840537--11840611	35	2.1	36	82	2	89	16	14	30	38	1.88
11845326--11845380	28	1.9	28	85	10	76	56	12	0	30	1.37
11847745--11847774	13	2.3	13	94	0	51	43	0	20	36	1.52
11848926--11848981	27	2.1	27	96	0	103	30	3	23	42	1.71
11849152--11849202	3	17.3	3	95	4	95	66	0	0	33	0.92
11852215--11852275	17	3.5	17	68	16	52	59	3	3	34	1.30
11858694--11858733	20	2.0	20	90	5	62	35	2	0	62	1.09
11859436--11859503	21	3.1	21	87	6	91	60	1	0	38	1.06
11859576--11859775	107	1.9	107	85	2	276	16	28	22	33	1.95
11860955--11861001	23	2.2	21	85	14	62	23	4	2	70	1.16
11860962--11861027	23	3.0	21	80	14	62	28	3	1	66	1.15
11872099--11872172	25	2.7	27	83	16	98	54	8	13	24	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11872110--11872159	25	2.0	25	100	0	100	56	8	8	28	1.57
11877289--11877370	38	2.1	39	86	2	112	51	8	10	29	1.67
11878613--11878711	39	2.6	38	85	1	126	48	6	5	40	1.50
11880549--11880849	24	12.5	24	72	4	185	39	12	19	27	1.88
11880715--11880875	48	3.3	48	81	3	189	43	14	16	26	1.85
11880715--11880832	49	2.4	48	90	1	173	44	13	16	25	1.85
11881163--11881369	54	3.8	53	83	3	173	37	13	20	28	1.90
11881226--11881421	54	3.7	53	83	2	221	38	15	19	26	1.91
11881215--11881475	107	2.4	109	80	3	280	37	13	19	28	1.90
11890673--11890803	68	1.9	68	80	0	154	23	22	18	35	1.95
11894064--11894114	16	3.2	16	75	25	63	58	1	1	37	1.20
11894079--11894132	15	3.5	15	72	22	58	53	5	3	37	1.42
11894064--11894138	31	2.4	31	97	0	141	56	4	2	37	1.32
11894120--11894182	23	3.0	22	68	17	60	49	3	3	44	1.34
11904941--11904991	26	2.0	26	88	7	77	62	3	1	31	1.24
11906085--11906112	14	2.0	14	100	0	56	7	14	28	50	1.69
11906494--11906830	44	7.7	44	72	11	221	27	24	19	28	1.99
11906372--11906960	216	2.7	216	90	1	916	27	23	20	28	1.99
11914773--11914818	24	1.9	24	86	0	65	8	26	17	47	1.76
11917995--11918049	15	3.4	17	79	13	55	58	3	1	36	1.26
11919133--11919160	14	2.0	14	100	0	56	7	14	28	50	1.69
11941047--11941085	18	2.2	17	86	13	53	46	20	0	33	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11948047--11948141	23	4.3	23	78	10	117	29	24	20	26	1.99
11948353--11948391	18	2.2	17	86	13	53	46	20	0	33	1.51
11951984--11952029	23	2.0	24	87	8	69	0	17	8	73	1.07
11951986--11952035	23	2.2	23	82	10	59	2	18	8	72	1.19
11958927--11958970	7	6.1	7	82	12	54	72	0	15	11	1.11
11959463--11959525	10	6.4	10	77	14	51	31	1	0	66	1.01
11959442--11959557	40	2.9	41	88	8	184	35	3	0	60	1.20
11959482--11959548	11	6.4	11	75	18	63	37	2	0	59	1.13
11959531--11959570	21	1.9	21	89	0	62	37	2	0	60	1.11
11959530--11959588	22	2.8	21	80	14	59	40	1	3	54	1.27
11960534--11960825	129	2.3	129	89	2	444	32	19	22	25	1.97
11960812--11961187	44	8.7	43	69	12	171	30	18	21	29	1.97
11960813--11961215	219	1.8	219	92	0	680	31	18	20	29	1.97
11961207--11961401	100	1.9	101	86	1	275	35	22	18	23	1.96
11961239--11961401	50	3.3	50	77	0	173	38	22	17	22	1.94
11961935--11961981	22	2.2	21	84	3	58	12	46	14	25	1.80
11962266--11962298	17	1.9	17	88	11	50	0	12	9	78	0.95
11963606--11963649	16	2.9	15	83	10	54	38	4	2	54	1.33
11965805--11965876	33	2.2	33	82	7	85	30	5	13	50	1.65
11966475--11966586	56	2.0	55	94	1	197	47	16	14	22	1.82
11968547--11968603	18	3.2	18	82	7	71	54	1	3	40	1.28
11971684--11971721	6	6.2	6	87	6	58	39	0	60	0	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11971684--11971719	18	2.0	18	100	0	72	38	0	61	0	0.96
11971689--11971730	18	2.3	18	87	0	57	40	0	59	0	0.97
11980134--11980443	159	1.9	159	90	3	491	43	5	10	39	1.64
11980558--11980582	12	2.1	12	100	0	50	60	0	40	0	0.97
11986608--11986641	17	2.0	17	88	0	50	26	29	29	14	1.95
11988340--11988366	7	3.9	7	100	0	54	40	0	0	59	0.98
11988921--11988979	28	2.1	28	96	0	109	23	16	13	45	1.83
12016830--12016863	7	4.9	7	86	13	52	70	0	14	14	1.17
12016830--12016863	13	2.4	15	90	9	54	70	0	14	14	1.17
12023103--12023142	18	2.2	18	100	0	80	35	0	32	32	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141