genome.fa.s1.2.7.7.80.10.50.1000.21.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  21  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6698828--6699179	178	2.0	175	97	1	659	34	19	11	34	1.87
6701253--6701491	119	2.0	120	99	0	471	31	15	12	41	1.84
6705286--6705358	30	2.5	27	80	10	74	32	10	6	49	1.65
6707402--6708504	414	2.7	415	81	8	1274	34	14	11	39	1.82
6708674--6708713	11	4.1	10	81	18	57	52	0	0	47	1.00
6708696--6708731	16	2.2	17	90	5	56	61	0	0	38	0.96
6708919--6710371	416	3.5	420	88	2	2147	33	13	12	40	1.82
6711733--6711795	30	2.1	30	96	0	117	26	3	12	57	1.51
6712357--6713866	414	3.6	415	85	4	2031	34	13	12	40	1.82
6715147--6717666	413	6.0	415	86	4	2826	33	14	12	39	1.84
6718031--6718924	225	4.0	225	99	0	1752	36	17	9	36	1.82
6719546--6720217	225	3.0	225	99	0	1326	36	18	9	36	1.82
6721777--6721869	48	1.9	48	100	0	186	45	18	19	17	1.86
6723122--6723147	12	2.2	12	100	0	52	65	0	0	34	0.93
6723532--6725040	416	3.6	415	86	4	2065	33	13	12	40	1.82
6726324--6727562	416	3.0	411	86	3	1710	33	14	12	39	1.83
6728686--6729033	162	2.1	162	88	4	515	34	16	16	32	1.91
6729057--6729107	20	2.5	20	80	3	57	52	5	5	35	1.50
6730629--6730681	10	5.3	10	93	0	79	5	0	45	49	1.26
6730629--6730681	4	13.2	4	91	0	79	5	0	45	49	1.26
6730629--6730681	6	8.8	6	91	0	79	5	0	45	49	1.26
6733284--6733316	1	33.0	1	100	0	66	100	0	0	0	0.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6735532--6735588	28	2.0	28	100	0	114	36	7	24	31	1.82
6739972--6740036	34	2.0	31	88	8	94	36	7	15	40	1.76
6744685--6744726	20	2.2	20	86	4	59	33	2	2	61	1.21
6746397--6746447	19	2.9	17	78	16	59	15	1	5	76	1.07
6750460--6750518	9	6.4	9	80	9	66	42	27	10	20	1.84
6752338--6752377	14	2.8	15	88	11	66	82	0	17	0	0.67
6752643--6752865	108	2.1	109	87	0	322	25	17	8	49	1.74
6753337--6753393	24	2.3	24	90	3	87	36	14	21	28	1.92
6753708--6753895	88	2.1	88	86	1	252	29	18	22	29	1.97
6754058--6754280	123	1.8	123	86	0	320	30	14	26	29	1.95
6754584--6754935	44	7.8	44	74	10	223	30	21	20	27	1.98
6754357--6755071	227	3.1	225	85	3	848	30	19	20	28	1.97
6756543--6756593	19	2.9	17	78	16	59	15	1	5	76	1.07
6756624--6756660	12	3.1	12	88	0	56	24	0	8	67	1.17
6767638--6767693	27	2.1	27	100	0	112	41	17	26	14	1.88
6769626--6769686	31	2.0	31	87	6	88	39	11	14	34	1.82
6783300--6783330	16	1.9	16	93	0	53	29	0	6	64	1.18
6784026--6784084	30	1.9	31	83	10	77	61	5	8	25	1.46
6789214--6789617	30	13.1	30	82	5	342	28	23	22	25	1.99
6789228--6789584	15	23.0	15	65	6	129	29	22	21	27	1.99
6789222--6789617	63	6.4	60	85	4	348	28	23	21	26	1.99
6789227--6789442	33	6.7	33	86	6	318	30	23	18	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6789215--6789630	96	4.5	90	79	7	286	28	23	22	25	1.99
6791306--6791333	3	9.3	3	100	0	56	35	0	0	64	0.94
6806493--6806685	61	3.2	61	73	8	232	49	4	3	42	1.39
6806457--6806710	120	2.1	120	100	0	508	51	3	2	42	1.33
6806572--6806635	28	2.4	28	86	5	87	56	0	0	43	0.99
6806498--6806681	59	3.1	59	68	20	182	49	4	3	42	1.40
6806708--6806746	20	2.0	20	84	0	51	43	2	12	41	1.56
6810848--6810903	22	2.5	22	85	8	69	33	5	0	60	1.19
6812463--6812493	15	2.0	16	93	6	55	51	16	6	25	1.68
6820569--6820619	23	2.2	23	89	0	75	54	3	0	41	1.19
6820580--6820630	23	2.3	22	90	6	77	50	0	0	49	1.00
6829083--6829123	20	2.0	20	95	0	73	36	24	12	26	1.91
6843896--6843936	14	2.9	15	89	10	61	53	0	0	46	1.00
6848264--6848293	8	3.6	8	95	4	51	23	0	0	76	0.78
6848622--6848705	8	10.0	8	71	22	57	34	1	4	59	1.26
6852960--6853009	15	3.2	15	78	15	57	32	2	0	66	1.03
6852966--6853003	17	2.2	17	86	13	51	34	2	0	63	1.09
6852975--6853029	19	2.9	19	78	19	62	32	1	0	65	1.03
6859795--6859838	18	2.4	19	79	20	58	43	0	13	43	1.44
6862210--6862272	25	2.6	24	72	5	63	19	26	19	34	1.95
6866728--6866775	24	2.0	25	83	4	62	77	4	10	8	1.12
6874820--6874871	26	2.0	27	88	3	79	28	25	1	44	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6882439--6882489	26	2.0	26	84	0	66	29	7	27	35	1.85
6888867--6889916	34	30.8	34	94	1	1825	36	15	27	20	1.93
6891749--6891786	9	4.2	9	93	0	67	39	23	10	26	1.87
6909359--6909384	2	13.0	2	100	0	52	50	0	0	50	1.00
6914195--6914231	1	37.0	1	94	0	65	97	0	0	2	0.18
6923198--6923256	31	1.9	31	92	0	100	30	11	11	45	1.77
6923702--6923764	17	3.6	17	78	10	65	26	0	22	50	1.49
6925064--6925226	80	2.0	81	98	1	319	39	4	23	31	1.76
6942765--6942789	13	1.9	13	100	0	50	0	8	0	92	0.40
6943063--6943117	29	1.9	28	85	10	76	60	1	1	36	1.18
6943057--6943100	23	1.9	23	85	0	61	56	2	0	40	1.11
6943703--6943731	7	4.1	7	100	0	58	44	0	0	55	0.99
6944296--6944393	47	2.1	47	94	0	169	30	19	23	26	1.98
6944397--6944455	28	2.2	27	84	6	75	10	11	18	59	1.60
6948144--6948713	127	4.5	126	87	4	765	30	22	16	31	1.96
6948829--6948866	9	4.2	9	89	0	58	57	21	0	21	1.40
6949518--6949546	15	1.9	15	100	0	58	34	17	0	48	1.47
6949531--6949568	19	2.0	19	85	10	51	23	13	0	63	1.30
6951016--6951064	8	6.1	8	78	7	55	67	2	2	28	1.13
6952795--6952859	30	2.2	30	81	8	80	30	6	10	52	1.61
6963552--6963762	91	2.3	91	100	0	422	27	19	20	33	1.97
6972441--6973177	367	2.0	369	99	0	1451	48	9	15	26	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6976301--6976334	5	6.8	5	100	0	68	79	0	20	0	0.73
6983479--6983652	86	2.0	87	97	1	332	53	7	6	32	1.56
6988012--6988069	26	2.2	26	84	0	71	39	17	17	25	1.91
6991731--6991783	22	2.4	22	90	0	79	43	22	22	11	1.85
6992833--6992886	26	2.1	26	100	0	108	37	22	14	25	1.93
6993642--6993691	25	2.0	25	88	7	75	26	18	32	24	1.97
6998066--6998115	25	2.0	25	84	7	66	26	16	32	26	1.96
7002703--7002798	48	2.0	48	93	4	167	26	21	27	25	2.00
7006021--7006097	35	2.2	35	95	0	136	46	16	14	22	1.83
7009841--7009892	23	2.3	23	82	0	59	63	1	5	28	1.28
7015462--7015486	11	2.3	11	100	0	50	92	8	0	0	0.40
7019620--7019670	26	2.1	24	85	10	68	45	1	1	50	1.24
7020810--7020842	5	6.4	5	96	3	57	21	0	0	78	0.75
7032081--7032128	1	48.0	1	89	0	60	2	0	6	91	0.48
7044815--7044989	79	2.2	79	96	0	323	38	10	15	35	1.82
7049273--7049301	14	2.1	14	100	0	58	20	27	24	27	1.99
7051050--7051097	24	2.0	24	87	0	69	18	29	20	31	1.97
7061279--7061373	3	31.7	3	85	0	91	57	1	7	33	1.33
7065079--7065123	21	2.1	22	91	4	74	37	20	4	37	1.73
7065413--7065478	25	2.7	24	72	4	60	40	13	25	19	1.89
7068697--7068907	105	2.0	105	100	0	422	23	26	13	36	1.92
7068972--7069026	20	2.8	20	72	22	55	21	5	1	70	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7070920--7071013	11	9.4	11	70	20	55	59	0	3	37	1.13
7070965--7071024	29	2.1	29	93	0	102	58	0	1	40	1.08
7070894--7071013	38	3.0	38	90	8	168	60	0	3	36	1.14
7070931--7071035	18	5.6	19	68	18	69	60	0	1	37	1.07
7073187--7073332	43	3.4	43	81	7	188	31	24	16	27	1.96
7077595--7077716	63	1.9	63	93	0	208	35	3	20	40	1.69
7087015--7087051	11	3.4	11	88	0	56	29	5	0	64	1.15
7087015--7087058	22	2.0	22	82	8	54	31	4	2	61	1.28
7100066--7100179	51	2.2	49	80	8	129	29	17	7	44	1.77
7105967--7106204	118	2.0	118	94	0	413	31	16	16	36	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141