genome.fa.s1.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  111  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35702835--35702874	9	4.4	9	87	0	62	35	10	17	37	1.83
35706504--35706544	16	2.7	16	79	20	52	48	9	0	41	1.36
35715314--35715350	12	3.1	12	84	0	56	21	24	21	32	1.98
35720594--35720635	22	2.0	21	90	9	68	57	0	0	42	0.99
35722109--35722152	10	4.4	10	82	0	52	45	2	11	40	1.53
35721602--35722932	263	5.3	257	76	15	1046	45	7	10	36	1.67
35722276--35722856	232	2.5	230	84	4	740	44	7	10	38	1.67
35732375--35732417	18	2.4	18	88	0	59	41	44	2	11	1.53
35732556--35732622	18	3.7	18	85	0	98	26	10	25	37	1.88
35732556--35732622	9	7.4	9	82	0	80	26	10	25	37	1.88
35732556--35732621	27	2.4	27	82	9	89	27	10	25	36	1.89
35737279--35737316	14	2.7	14	91	0	58	47	2	10	39	1.52
35737335--35737405	32	2.2	32	85	5	90	30	5	11	52	1.60
35737545--35737591	18	2.4	20	75	17	53	46	4	6	42	1.48
35737733--35737786	25	2.0	26	86	10	74	40	5	5	48	1.50
35738139--35738209	15	4.6	15	72	17	56	47	2	1	47	1.25
35738266--35738326	33	1.9	31	83	12	79	55	1	0	42	1.09
35738802--35739004	89	2.3	90	85	3	257	34	19	9	35	1.85
35739139--35739198	19	3.3	19	72	6	52	61	0	1	36	1.06
35739157--35739218	27	2.3	27	86	10	83	59	1	3	35	1.23
35739233--35739272	21	1.9	21	90	10	64	67	5	2	25	1.23
35744273--35744341	26	2.8	26	84	6	90	37	23	21	17	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35744442--35744498	25	2.3	25	82	14	73	47	21	17	14	1.82
35744794--35744832	5	7.6	5	82	5	51	41	17	0	41	1.50
35748038--35748074	18	2.1	18	100	0	74	32	16	5	45	1.70
35753180--35753214	18	2.0	17	88	5	52	65	2	0	31	1.07
35753177--35753434	108	2.4	108	88	3	333	47	5	7	39	1.55
35753222--35753439	108	2.0	109	99	0	429	44	5	10	39	1.61
35760849--35760931	42	2.0	43	87	2	123	38	26	13	21	1.90
35775425--35775486	13	4.8	13	78	4	54	27	16	25	30	1.96
35788350--35788388	20	2.0	20	85	10	53	35	0	2	61	1.10
35789119--35789174	19	2.9	19	78	0	67	39	0	0	60	0.97
35789165--35789374	104	2.0	105	99	0	413	32	15	6	46	1.70
35810760--35810961	60	3.4	60	76	6	189	38	26	12	22	1.90
35825085--35825152	31	2.2	31	86	5	93	47	8	11	32	1.71
35830241--35830319	27	2.9	27	98	0	149	26	21	36	15	1.93
35833624--35833663	21	2.0	21	90	5	64	50	2	0	47	1.14
35833640--35833707	5	13.8	5	90	3	102	55	0	0	44	0.99
35835781--35835833	3	18.0	3	84	3	72	32	3	1	62	1.24
35846042--35846271	99	2.4	97	84	4	293	29	22	20	27	1.98
35853766--35853826	26	2.5	26	80	15	76	21	24	22	31	1.98
35866438--35866486	19	2.5	20	80	9	57	40	16	18	24	1.90
35868753--35868784	9	3.6	9	91	0	55	43	21	9	25	1.82
35873437--35873722	56	5.1	57	78	4	253	42	16	11	29	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35873437--35873722	112	2.5	113	83	2	335	42	16	11	29	1.83
35873476--35873722	56	4.4	56	82	2	273	43	15	11	29	1.82
35874459--35874487	6	4.8	6	100	0	58	17	0	17	65	1.27
35874444--35874500	18	2.9	20	82	12	64	22	3	12	61	1.46
35876671--35876715	21	2.1	21	84	8	56	13	4	13	68	1.35
35876921--35876966	18	2.8	17	81	12	60	10	4	13	71	1.27
35897561--35897594	18	1.9	18	88	5	52	14	17	0	67	1.23
35897962--35897996	18	2.0	17	94	5	61	42	0	0	57	0.99
35898111--35898170	29	2.0	29	83	6	75	50	10	13	26	1.73
35899680--35899716	17	2.1	18	90	5	58	10	40	29	18	1.85
35900374--35900413	6	6.7	6	88	11	64	82	0	2	15	0.77
35904420--35904511	43	2.1	44	83	2	114	32	22	17	27	1.96
35908038--35908065	2	14.0	2	100	0	56	50	0	50	0	1.00
35909934--35909967	18	1.9	17	88	5	50	32	0	8	58	1.29
35916926--35916959	17	2.0	17	88	0	50	35	0	29	35	1.58
35924242--35924445	98	2.1	98	92	0	338	46	12	4	36	1.63
35925517--35925552	18	1.9	18	88	5	54	58	2	0	38	1.13
35927402--35927438	16	2.4	16	90	4	58	8	0	18	72	1.08
35928769--35928794	5	5.2	5	100	0	52	42	19	19	19	1.90
35930124--35930160	9	4.1	9	92	0	65	29	10	13	45	1.77
35930190--35930222	11	3.0	11	100	0	66	9	9	9	72	1.28
35933369--35933493	62	2.0	62	93	0	214	35	22	14	28	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35934543--35934592	19	2.6	19	87	3	73	18	26	34	22	1.96
35938616--35939714	371	3.0	371	97	1	2048	28	16	12	43	1.84
35941889--35942418	103	5.1	103	99	0	1042	34	19	15	30	1.93
35943245--35943406	80	2.0	81	98	1	317	43	7	11	38	1.68
35945048--35945132	9	9.4	9	70	19	61	65	2	1	30	1.12
35945082--35945132	17	2.9	18	74	8	52	66	1	1	29	1.13
35953494--35953788	46	6.2	46	80	9	313	27	24	18	29	1.98
35953494--35953744	97	2.6	97	92	0	412	27	24	19	29	1.98
35953494--35953788	97	3.1	94	87	4	405	27	24	18	29	1.98
35955031--35955057	13	2.1	13	100	0	54	44	14	25	14	1.84
35960649--35960690	22	1.9	22	95	0	75	61	4	9	23	1.45
35960651--35960697	22	2.3	21	85	10	62	63	4	8	23	1.40
35961467--35961524	20	2.7	22	76	17	68	18	3	13	63	1.43
35961480--35961522	20	2.1	21	91	8	72	20	4	18	55	1.60
35963636--35963685	21	2.5	20	83	3	64	30	18	20	32	1.96
35967072--35967188	58	2.0	58	98	0	225	43	19	10	26	1.83
35967611--35967764	43	3.6	43	82	9	190	28	25	16	28	1.97
35968109--35968457	68	5.1	68	91	0	518	41	15	14	28	1.86
35973131--35973181	25	2.0	26	84	3	68	41	9	9	39	1.71
35981618--35981659	21	2.1	19	91	8	66	61	0	2	35	1.09
35981618--35981659	20	2.1	20	86	8	59	61	0	2	35	1.09
35981810--35981860	25	2.0	25	85	7	68	58	5	7	27	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35981918--35981959	21	2.1	19	91	8	66	61	0	2	35	1.09
35981918--35981959	20	2.1	20	86	8	59	61	0	2	35	1.09
35981579--35982184	300	2.0	301	99	0	1196	46	10	10	32	1.72
35982110--35982160	25	2.0	25	85	7	68	58	5	7	27	1.49
35988605--35988639	14	2.3	16	85	14	56	65	0	22	11	1.24
35993131--35993856	89	8.6	85	78	10	568	32	14	10	42	1.80
35993221--35993357	72	1.9	72	83	3	177	32	13	11	43	1.80
35993135--35993794	158	3.9	160	77	11	469	33	14	10	42	1.79
35993292--35993870	89	6.7	86	85	3	569	33	13	10	41	1.80
35993293--35993688	177	2.3	175	87	2	562	34	14	10	40	1.81
35993676--35993877	84	2.4	82	87	4	287	28	13	11	46	1.78
36006385--36006488	52	2.0	52	90	3	165	33	4	12	49	1.62
36007894--36007937	15	2.9	16	83	16	58	61	4	9	25	1.45
36008495--36008549	21	2.6	21	82	0	65	29	27	12	30	1.93
36009077--36009135	18	3.4	18	78	15	63	61	1	28	8	1.35
36011695--36011972	27	10.3	27	77	9	221	43	19	17	18	1.88
36011695--36011972	54	5.2	53	81	4	263	43	19	17	18	1.88
36011695--36011971	81	3.4	80	83	3	315	43	19	18	18	1.88
36012147--36012223	26	3.0	26	88	0	109	14	23	24	37	1.92
36013379--36013418	4	9.5	4	84	10	53	70	0	30	0	0.88
36017399--36017596	48	4.1	48	86	3	256	31	9	10	48	1.69
36019668--36019692	12	2.1	12	100	0	50	48	8	0	44	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36020255--36020333	31	2.5	31	76	17	92	36	32	0	30	1.58
36020332--36020360	13	2.3	13	94	5	51	0	37	0	62	0.96
36023396--36023434	6	6.5	6	100	0	78	33	30	35	0	1.58
36027174--36027241	29	2.4	27	76	13	64	38	2	7	51	1.45
36027176--36027258	31	2.7	30	83	9	96	36	2	7	54	1.41
36030817--36030878	21	2.9	21	75	15	63	46	1	3	48	1.28
36030823--36030879	22	2.6	21	75	8	69	49	0	3	47	1.18
36030825--36030893	23	2.8	25	77	22	74	50	0	4	44	1.21
36030998--36031047	26	2.0	25	85	14	68	40	12	8	40	1.72
36031454--36031493	18	2.2	18	95	0	71	67	5	22	5	1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141