genome.fa.s1.2.7.7.80.10.50.1000.39.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  39  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12625896--12625959	30	2.1	31	94	2	112	39	6	28	26	1.80
12625894--12625944	15	3.3	16	72	10	61	43	5	25	25	1.77
12632750--12632797	24	2.0	25	95	4	89	20	16	29	33	1.95
12633729--12633776	25	1.9	25	95	0	87	47	8	18	25	1.76
12633723--12633811	30	3.1	30	82	12	107	41	6	25	25	1.80
12634554--12634605	18	2.9	18	72	11	52	9	28	23	38	1.86
12638103--12638458	44	8.5	43	69	14	190	27	21	19	31	1.98
12638043--12638511	127	3.7	127	88	2	637	26	21	18	33	1.97
12638138--12638486	86	4.2	82	71	10	233	27	22	18	30	1.97
12638524--12638712	100	1.9	100	84	6	258	25	22	20	31	1.98
12647373--12647740	44	8.3	44	85	1	457	29	14	25	30	1.94
12647411--12647740	89	3.7	89	87	1	464	29	14	25	30	1.95
12647373--12647740	134	2.8	133	89	0	574	29	14	25	30	1.94
12648595--12648628	10	3.3	11	92	8	54	14	8	0	76	1.01
12651213--12651286	37	2.0	37	84	7	96	25	6	14	52	1.66
12652913--12652954	22	1.9	22	95	0	75	28	7	16	47	1.73
12653188--12653265	35	2.2	35	86	0	102	17	16	32	33	1.93
12658469--12658519	24	2.1	24	85	0	66	31	3	9	54	1.51
12660356--12660389	2	17.0	2	93	0	59	47	0	2	50	1.16
12664141--12664435	43	6.9	43	92	0	430	30	28	17	22	1.97
12669338--12669419	38	2.2	38	88	0	119	56	8	14	20	1.65
12669780--12669850	34	2.0	36	94	5	128	32	15	19	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12670244--12670328	39	2.2	39	87	4	118	23	21	16	38	1.92
12677079--12677304	113	2.0	113	92	1	373	37	7	8	46	1.64
12679555--12679595	13	3.1	14	79	13	50	75	17	2	4	1.08
12680679--12680752	20	3.5	20	70	25	55	35	0	6	58	1.25
12680745--12680795	22	2.3	22	83	12	68	23	5	3	66	1.30
12680748--12680797	23	2.2	23	89	7	75	24	6	4	66	1.32
12694317--12694349	15	2.1	16	88	5	50	27	15	6	51	1.66
12695227--12695726	44	11.4	44	93	1	810	27	19	26	27	1.99
12695648--12696535	441	2.0	441	100	0	1776	31	19	21	27	1.97
12697880--12697930	22	2.3	22	80	12	59	23	7	3	64	1.37
12697883--12697932	23	2.2	23	85	7	66	24	8	4	64	1.38
12699372--12699419	24	2.0	24	87	0	69	56	8	14	20	1.64
12699478--12699551	30	2.6	28	85	6	96	60	2	2	33	1.25
12699801--12699891	10	9.2	10	72	6	69	30	4	1	63	1.21
12699788--12699827	19	2.0	20	90	4	64	25	0	7	67	1.16
12699800--12699924	27	4.4	28	72	12	103	35	3	0	60	1.18
12699791--12699834	19	2.3	19	84	4	52	27	0	6	65	1.17
12699819--12699899	19	4.2	19	71	12	67	34	4	0	60	1.18
12699879--12699936	18	3.2	18	82	4	73	44	1	0	53	1.10
12699890--12699943	19	2.9	18	78	8	56	40	1	0	57	1.09
12699933--12699964	10	3.2	10	95	0	55	21	0	0	78	0.76
12700063--12700124	2	31.5	2	96	3	117	50	0	50	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12700791--12700833	20	2.2	20	80	8	54	60	0	2	37	1.10
12704506--12704535	11	2.7	11	100	0	60	86	0	0	13	0.57
12704505--12704543	11	3.5	11	89	3	51	79	5	0	15	0.90
12704595--12704666	27	2.7	27	77	0	99	23	33	34	8	1.85
12704906--12704938	17	1.9	17	93	0	57	9	9	6	75	1.18
12704973--12705095	30	4.4	30	76	21	122	26	4	8	60	1.45
12705034--12705074	20	2.0	20	86	9	57	24	0	7	68	1.15
12705042--12705095	15	3.6	15	79	16	67	25	1	7	64	1.30
12704998--12705114	53	2.2	53	86	7	166	28	3	6	61	1.38
12705359--12705525	39	4.3	37	65	18	97	55	10	5	28	1.55
12705296--12705611	118	2.6	124	87	7	484	55	11	7	26	1.61
12706557--12707148	154	3.7	154	78	15	681	51	8	9	28	1.64
12706746--12707105	185	2.0	176	83	11	444	49	8	11	28	1.67
12708074--12708146	27	2.7	27	84	0	101	27	23	32	16	1.96
12708192--12708246	28	2.0	28	85	7	76	69	0	29	1	0.99
12708194--12708355	40	4.0	39	86	9	211	68	0	29	1	1.02
12708251--12708362	46	2.5	43	74	21	106	69	0	28	0	1.00
12708196--12708355	81	2.0	81	87	7	236	68	0	29	1	1.02
12708255--12708360	23	4.4	23	70	20	65	69	0	28	0	1.00
12711717--12711756	10	3.8	11	83	9	57	2	25	0	72	0.97
12711845--12711922	27	2.9	27	86	0	102	19	35	21	23	1.96
12712027--12712075	19	2.4	21	83	10	57	16	2	8	73	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12715325--12715382	9	6.4	9	81	0	71	27	8	20	43	1.81
12715325--12715382	27	2.1	27	90	0	89	27	8	20	43	1.81
12715325--12715374	18	2.8	18	87	0	82	28	10	18	44	1.81
12716952--12716996	18	2.5	18	88	0	63	60	2	4	33	1.29
12717148--12717198	16	3.2	16	83	2	59	62	0	7	29	1.23
12718176--12718213	2	19.5	2	86	5	51	42	0	5	52	1.24
12718176--12718213	12	3.1	12	88	7	58	42	0	5	52	1.24
12719740--12719791	18	2.8	19	85	8	63	40	5	0	53	1.25
12725327--12725359	14	2.3	15	89	5	50	30	15	30	24	1.95
12725442--12725529	3	29.7	3	80	15	62	77	0	22	0	0.77
12725438--12725530	21	4.0	23	81	13	102	78	0	21	0	0.75
12725459--12725515	4	15.5	4	79	20	63	77	0	22	0	0.77
12725441--12725533	28	3.4	28	84	10	113	77	0	22	0	0.77
12726175--12727334	580	2.0	580	96	0	2140	33	16	20	29	1.94
12727354--12727752	45	9.0	45	79	6	438	31	25	21	22	1.98
12727354--12727754	89	4.5	89	87	2	583	31	25	20	22	1.98
12727354--12727866	178	3.0	175	84	6	618	30	24	21	23	1.99
12727721--12727783	31	2.0	31	93	0	108	22	26	23	26	2.00
12727749--12727866	45	2.6	45	89	0	182	27	20	22	29	1.98
12727678--12727821	76	1.9	76	89	0	225	27	24	20	27	1.99
12727628--12727875	121	2.1	119	82	1	307	31	23	19	25	1.98
12728022--12728119	44	2.2	44	81	3	108	27	17	26	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12728037--12728121	44	1.9	44	85	4	118	27	20	27	25	1.99
12728209--12728444	115	2.1	115	87	1	339	35	20	22	21	1.96
12729980--12730031	18	2.8	19	85	8	63	40	5	0	53	1.25
12731577--12731602	13	2.0	13	100	0	52	15	7	23	53	1.67
12740508--12740545	20	2.0	20	94	5	69	23	39	0	36	1.55
12740857--12740914	29	2.0	29	100	0	116	41	13	20	24	1.89
12741837--12741869	12	3.0	11	91	8	50	0	18	0	81	0.68
12749389--12749455	19	3.4	19	86	8	89	34	17	10	37	1.85
12749389--12749447	21	2.9	21	90	5	86	33	16	11	37	1.86
12750154--12750320	63	2.6	63	85	4	228	46	7	18	27	1.75
12750655--12750682	12	2.3	12	100	0	56	46	25	0	28	1.53
12751036--12751090	21	2.7	20	80	8	65	47	27	3	21	1.68
12751052--12751096	21	2.1	21	84	8	56	48	31	4	15	1.65
12751140--12751179	21	1.9	21	94	0	71	45	27	0	27	1.54
12754447--12754925	50	9.6	50	71	7	373	24	25	21	28	1.99
12754433--12754930	100	5.0	100	97	0	942	24	24	21	29	1.99
12770400--12770426	6	4.5	6	100	0	54	44	0	0	55	0.99
12771827--12771885	18	3.4	17	84	15	84	47	10	11	30	1.73
12772293--12772361	9	8.0	8	79	17	68	0	17	0	82	0.67
12772295--12772357	14	4.4	14	80	20	69	0	17	0	82	0.67
12772303--12772358	21	2.7	20	86	10	76	0	16	0	83	0.64
12772293--12772358	30	2.3	29	89	10	100	0	18	0	81	0.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12772293--12772359	15	4.6	14	77	14	73	0	17	0	82	0.68
12772365--12772414	26	2.0	25	88	4	73	0	18	46	36	1.49
12772497--12772536	20	2.0	21	85	5	55	5	10	5	80	1.02
12772636--12772678	22	1.9	23	90	4	70	0	44	0	55	0.99
12773036--12773189	30	5.2	29	83	8	195	41	6	18	33	1.76
12773036--12773191	59	2.6	59	87	6	210	41	6	18	33	1.76
12773194--12773219	10	2.6	10	100	0	52	7	0	7	84	0.77
12773375--12773960	83	7.4	79	88	4	747	35	19	16	28	1.93
12773989--12774133	30	5.0	29	82	7	186	42	5	18	33	1.74
12773979--12774133	59	2.6	58	87	6	215	41	5	18	34	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141