genome.fa.s1.2.7.7.80.10.50.1000.140.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  140  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45639952--45639992	6	6.8	6	100	0	82	65	0	0	34	0.93
45640192--45640330	20	7.2	20	69	11	65	36	12	9	41	1.75
45640167--45640330	56	2.9	54	77	11	152	34	12	10	42	1.77
45640249--45640312	20	3.0	21	84	4	67	42	9	7	40	1.66
45640266--45640312	22	2.2	21	84	3	58	48	8	8	34	1.64
45640099--45640471	17	21.1	17	72	11	225	30	13	11	44	1.79
45646370--45646468	11	8.9	11	78	17	66	81	9	9	0	0.87
45646367--45646471	12	8.9	11	74	18	70	82	8	8	0	0.83
45646369--45646462	16	5.6	17	72	19	74	81	9	8	0	0.86
45646384--45646465	27	3.2	25	77	19	80	82	9	7	0	0.83
45646367--45646454	33	2.7	33	80	13	101	82	10	6	0	0.82
45646425--45646471	22	2.1	22	92	7	78	85	4	10	0	0.74
45647340--45648820	74	19.9	74	95	2	2094	26	17	19	35	1.94
45650358--45650382	5	5.0	5	100	0	50	20	0	0	80	0.72
45650674--45651755	17	60.1	17	71	12	527	31	12	11	44	1.78
45650767--45650905	20	7.2	20	69	11	83	36	10	9	43	1.72
45650742--45650905	56	2.9	54	80	9	161	34	11	10	43	1.75
45650841--45650887	22	2.2	21	84	3	58	48	8	8	34	1.64
45651003--45651141	20	7.2	20	69	11	83	36	10	9	43	1.72
45650978--45651141	56	2.9	54	80	9	161	34	11	10	43	1.75
45650675--45651753	236	4.6	236	97	1	1999	31	12	11	44	1.78
45651077--45651123	22	2.2	21	84	3	58	48	8	8	34	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45651239--45651377	20	7.2	20	69	11	83	36	10	9	43	1.72
45651214--45651377	56	2.9	54	80	9	161	34	11	10	43	1.75
45651313--45651359	22	2.2	21	84	3	58	48	8	8	34	1.64
45651475--45651613	20	7.2	20	69	11	83	36	10	9	43	1.72
45651549--45651595	22	2.2	21	84	3	58	48	8	8	34	1.64
45652685--45652730	21	2.2	21	88	7	67	26	0	50	23	1.50
45653840--45653869	15	1.9	16	93	6	53	20	13	6	60	1.55
45653865--45653903	14	2.8	14	100	0	78	28	7	7	56	1.55
45656617--45656734	61	1.9	62	84	10	161	54	11	0	33	1.37
45656740--45656765	3	8.7	3	100	0	52	65	0	0	34	0.93
45657078--45657158	27	3.0	27	90	0	126	9	40	23	25	1.85
45657224--45657293	28	2.5	29	86	6	101	47	1	10	41	1.46
45659177--45659202	2	13.0	2	100	0	52	50	0	0	50	1.00
45680055--45680134	26	3.1	26	88	0	124	38	23	5	32	1.77
45683326--45683371	24	1.9	24	100	0	92	47	4	8	39	1.54
45683961--45684177	96	2.2	96	82	2	256	41	4	17	37	1.68
45688070--45688112	18	2.4	18	84	0	50	46	9	25	18	1.79
45689944--45690000	12	5.0	12	79	14	59	43	0	31	24	1.54
45689944--45690000	11	5.0	11	78	20	55	43	0	31	24	1.54
45689943--45690003	23	2.8	21	81	16	70	47	0	29	22	1.52
45689956--45690003	12	4.4	10	82	17	60	50	0	29	20	1.49
45690874--45690928	22	2.5	21	88	11	76	60	7	0	32	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45691402--45691521	20	6.6	18	72	23	67	35	0	2	61	1.15
45691423--45691527	9	11.4	9	68	18	65	33	0	1	64	1.04
45691403--45691526	29	4.5	29	72	21	83	33	0	2	62	1.14
45691405--45691493	46	1.9	46	82	8	110	35	1	3	59	1.21
45691381--45691525	75	2.0	72	88	9	213	33	0	4	62	1.19
45691423--45691549	20	6.9	17	70	17	60	32	0	2	64	1.12
45691789--45691850	26	2.3	26	91	5	97	50	6	3	40	1.44
45694979--45695011	13	2.5	14	90	9	52	33	0	6	60	1.21
45700023--45700067	17	2.7	17	82	3	56	66	4	0	28	1.11
45703937--45703993	27	2.1	27	87	9	82	59	10	15	14	1.60
45704461--45704523	29	2.1	30	88	2	92	42	34	3	19	1.67
45716202--45716301	44	2.3	44	81	6	105	32	17	25	26	1.97
45716313--45716435	44	2.8	44	81	2	140	26	20	25	28	1.99
45716633--45716809	44	3.8	44	69	17	124	31	18	20	29	1.96
45716662--45716870	98	2.1	98	93	0	355	33	16	20	29	1.95
45717236--45717297	29	2.1	29	87	3	88	45	33	1	19	1.60
45717236--45717313	30	2.6	29	85	4	93	43	35	2	17	1.63
45717251--45717313	29	2.1	29	88	2	90	42	34	3	19	1.67
45720450--45720475	7	3.7	7	100	0	52	57	0	0	42	0.98
45720447--45720484	14	2.8	14	88	4	51	57	5	0	36	1.21
45731170--45731282	51	2.2	51	93	0	190	34	14	22	29	1.93
45731293--45731431	48	2.9	48	88	4	199	22	13	30	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45737165--45737300	68	2.0	68	91	0	218	33	16	14	34	1.90
45745513--45745597	43	2.0	44	86	6	120	40	4	8	47	1.54
45752538--45752566	2	14.5	2	100	0	58	48	0	0	51	1.00
45755307--45755349	19	2.1	22	87	12	65	41	0	2	55	1.12
45765502--45765526	12	2.1	12	100	0	50	40	24	0	36	1.55
45776326--45776350	6	4.2	6	100	0	50	32	0	0	68	0.90
45781066--45781127	30	2.1	30	100	0	124	22	6	12	58	1.58
45787046--45787093	20	2.4	21	76	13	57	54	0	0	45	0.99
45790152--45790206	19	3.1	17	74	23	51	67	0	5	27	1.12
45790379--45790420	18	2.5	18	81	11	54	33	0	4	61	1.17
45792270--45792564	146	2.0	147	99	0	583	47	11	2	38	1.54
45793040--45793070	10	3.1	10	100	0	62	51	0	0	48	1.00
45793297--45793366	27	2.5	28	88	6	99	38	10	1	50	1.45
45793524--45793615	8	10.6	8	73	14	58	72	0	27	0	0.84
45793574--45793715	3	49.0	3	71	18	54	69	0	30	0	0.89
45793533--45793691	61	2.8	56	85	11	175	69	0	30	0	0.89
45793523--45793679	10	16.3	10	70	22	65	69	0	30	0	0.89
45793525--45793710	61	3.0	60	75	17	168	70	0	29	0	0.88
45793529--45793745	41	5.2	40	74	13	136	70	0	29	0	0.88
45793541--45793739	110	1.8	110	84	9	273	68	0	31	0	0.89
45799545--45799633	40	2.3	41	83	13	116	51	12	4	31	1.59
45799878--45799951	27	2.7	27	91	4	114	16	28	28	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45799878--45799960	27	3.1	27	84	3	105	15	28	27	27	1.96
45800021--45800087	26	2.5	26	87	4	98	49	0	10	40	1.37
45800425--45800450	13	2.0	13	100	0	52	23	15	23	38	1.92
45801534--45801572	13	2.9	14	80	7	53	35	0	0	64	0.94
45804471--45804509	17	2.3	17	100	0	78	35	20	5	38	1.75
45804776--45804841	29	2.2	30	79	10	73	59	4	3	33	1.33
45809504--45809759	128	2.0	128	94	1	451	42	7	12	37	1.71
45815327--45815444	24	4.9	24	75	7	96	31	21	27	20	1.98
45815327--45815568	24	9.9	24	68	15	77	30	21	26	21	1.98
45817939--45817963	2	12.5	2	100	0	50	52	0	0	48	1.00
45820642--45820678	15	2.5	15	90	0	56	21	16	10	51	1.74
45821946--45821980	17	2.0	18	88	5	54	42	5	2	48	1.41
45823660--45823684	13	1.9	13	100	0	50	40	0	8	52	1.31
45831101--45831141	14	3.0	14	80	13	50	56	4	26	12	1.56
45837268--45837308	22	1.9	22	85	5	57	43	12	4	39	1.63
45842413--45842446	15	2.3	15	89	0	50	38	0	0	61	0.96
45846690--45846729	7	5.7	7	87	0	53	65	0	2	32	1.06
45846690--45846733	14	3.1	14	86	0	61	65	0	2	31	1.05
45846686--45846729	21	2.0	22	86	4	63	61	0	2	36	1.09
45855774--45855828	24	2.2	24	81	9	58	12	9	14	63	1.51
45859305--45859640	168	2.0	168	94	0	591	26	18	12	42	1.85
45860320--45860408	44	2.0	44	93	0	151	34	14	11	39	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45860670--45860715	23	2.0	23	91	0	74	45	15	6	32	1.71
45884236--45884275	2	20.5	2	94	5	73	50	0	0	50	1.00
45884787--45884931	41	3.5	41	89	0	209	26	20	28	24	1.99
45894961--45894993	2	16.5	2	100	0	66	48	0	0	51	1.00
45896253--45896277	11	2.3	11	100	0	50	40	8	0	52	1.31
45896237--45896366	40	3.3	39	89	4	201	31	4	0	63	1.14
45896237--45896389	39	3.8	40	87	6	213	32	3	0	63	1.13
45896276--45896307	16	2.0	16	93	0	55	28	0	0	71	0.86
45896283--45896345	29	2.1	28	86	13	83	30	3	0	66	1.07
45896274--45896334	9	6.4	9	72	23	54	26	1	0	72	0.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141