genome.fa.s1.2.7.7.80.10.50.1000.91.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  91  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29471919--29472151	89	2.6	89	89	2	362	24	24	24	27	2.00
29472203--29472631	44	9.7	44	72	11	245	29	21	17	31	1.96
29472511--29472631	42	2.8	44	81	2	138	27	24	19	28	1.98
29479833--29479875	22	1.9	22	85	4	59	39	13	6	39	1.72
29479847--29479898	19	2.9	17	72	10	50	34	15	9	40	1.80
29480358--29480382	12	2.1	12	100	0	50	92	0	8	0	0.40
29480603--29480696	46	2.0	46	95	0	170	43	9	7	39	1.65
29488527--29488591	30	2.2	30	83	5	78	40	6	10	43	1.65
29496331--29496458	50	2.6	51	86	5	172	26	24	28	20	1.99
29497974--29498004	13	2.4	13	100	0	62	32	25	6	35	1.82
29499487--29499622	38	3.6	38	84	2	166	30	25	22	22	1.99
29501559--29501597	20	1.9	21	85	15	55	48	7	12	30	1.69
29504851--29504917	26	2.6	26	95	4	118	19	26	5	47	1.72
29511980--29512004	13	1.9	13	100	0	50	52	8	0	40	1.31
29512832--29513057	111	2.0	111	92	1	373	23	24	15	36	1.93
29521722--29521759	13	2.9	13	92	0	58	0	31	21	47	1.51
29527268--29527422	30	5.2	28	80	13	175	29	23	23	23	1.99
29527530--29527610	26	3.1	26	87	7	128	34	23	20	20	1.97
29527780--29528536	27	28.2	27	80	7	641	21	19	19	39	1.92
29527780--29528536	81	9.4	81	83	3	708	21	19	19	39	1.92
29533803--29534674	2	436.0	2	99	0	1735	0	49	0	50	1.00
29535405--29535451	21	2.2	21	100	0	94	25	21	19	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29536317--29536393	35	2.2	35	97	0	145	29	10	15	44	1.80
29539447--29539497	22	2.3	22	93	0	84	39	17	9	33	1.83
29543123--29543196	31	2.4	30	80	12	89	35	10	13	40	1.80
29543337--29543393	29	1.9	29	92	3	96	56	5	0	38	1.22
29544415--29544490	12	6.3	12	79	0	89	44	11	5	38	1.64
29544415--29544490	24	3.2	24	96	0	134	44	11	5	38	1.64
29550780--29550821	20	2.1	20	90	0	66	21	2	33	42	1.66
29551907--29551944	5	8.0	5	85	8	53	44	0	0	55	0.99
29556884--29556930	24	2.0	24	84	16	62	31	0	17	51	1.46
29557091--29557228	40	3.5	40	73	6	129	26	18	24	29	1.98
29579495--29579579	35	2.4	35	82	0	98	28	28	18	24	1.98
29584202--29584250	12	4.0	12	83	2	53	81	2	10	6	0.94
29590475--29590501	2	13.5	2	100	0	54	0	48	0	51	1.00
29601702--29601909	70	3.0	70	80	4	240	33	25	16	24	1.96
29601852--29601961	56	2.0	56	88	0	166	31	25	18	24	1.97
29605157--29605194	20	1.9	20	94	0	67	36	15	26	21	1.93
29606780--29606856	23	3.3	23	80	10	93	25	20	16	36	1.94
29606780--29606850	24	3.0	24	84	10	92	25	21	18	35	1.95
29612050--29612099	25	2.0	25	84	7	66	60	6	12	22	1.53
29615930--29616005	40	1.9	39	83	2	98	35	22	26	15	1.94
29616105--29616359	42	6.1	41	87	1	321	14	24	27	33	1.94
29632362--29632532	66	2.6	65	85	4	209	39	19	27	13	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29632504--29632615	21	5.3	21	86	0	107	37	16	41	3	1.66
29632562--29632615	21	2.6	21	100	0	108	38	12	44	3	1.61
29632921--29633083	43	3.7	42	79	11	175	20	19	30	28	1.97
29632920--29633083	89	1.8	89	87	7	244	21	19	30	28	1.97
29632923--29633104	43	4.2	43	75	9	152	21	20	30	26	1.98
29633071--29633190	43	2.8	43	81	5	127	35	25	20	19	1.96
29635398--29635491	47	2.0	47	93	0	161	29	18	18	34	1.94
29637493--29637523	3	10.3	3	100	0	62	67	0	32	0	0.91
29653853--29654268	214	1.9	215	98	0	798	22	18	24	34	1.96
29654455--29654541	26	3.3	26	83	3	102	34	25	13	26	1.93
29661425--29661757	27	12.4	27	84	5	381	42	20	16	20	1.89
29662103--29662319	28	7.8	28	88	3	305	23	23	23	29	1.99
29665447--29665505	21	2.8	20	79	7	64	55	13	3	27	1.54
29666279--29666338	20	3.0	20	87	0	93	33	8	13	45	1.73
29668292--29668570	138	2.0	138	98	0	540	50	16	7	26	1.70
29668292--29668493	64	2.9	69	62	16	155	48	15	8	28	1.74
29668335--29668546	69	3.1	69	62	22	163	50	17	6	25	1.69
29668360--29668571	69	3.1	69	63	15	175	52	16	5	25	1.65
29668324--29668610	138	2.1	137	86	3	380	52	17	5	25	1.66
29669701--29669737	9	4.2	9	89	6	58	32	18	10	37	1.86
29669700--29669736	17	2.2	17	95	0	65	35	18	10	35	1.86
29669735--29669884	37	4.1	37	97	0	273	46	14	4	34	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29669745--29669879	17	7.4	17	66	14	72	49	14	3	32	1.60
29669752--29669888	20	7.3	20	65	14	94	48	13	4	32	1.63
29669743--29669901	74	2.1	74	90	2	248	49	14	3	32	1.61
29673800--29673828	13	2.2	13	100	0	58	24	6	13	55	1.63
29673828--29673900	19	3.5	19	70	20	65	20	1	36	41	1.61
29673814--29673903	44	2.0	44	95	4	164	21	2	33	43	1.65
29673887--29673911	13	1.9	13	100	0	50	16	0	44	40	1.47
29675455--29675525	25	2.8	25	84	0	97	26	23	23	25	2.00
29683087--29683150	25	2.5	25	84	5	74	26	25	23	25	2.00
29693056--29693206	75	2.0	75	93	0	257	38	11	19	30	1.88
29695245--29695280	18	2.0	18	100	0	72	38	16	5	38	1.72
29698057--29698163	44	2.4	44	98	0	205	28	15	24	30	1.96
29698114--29698237	57	2.2	58	95	1	223	34	12	24	28	1.92
29698204--29698249	7	6.6	7	87	0	65	41	4	26	28	1.74
29699452--29699494	16	2.7	16	88	0	68	51	0	6	41	1.29
29699497--29699616	59	2.1	59	85	4	172	40	5	10	43	1.61
29700108--29701590	740	2.0	740	100	0	2966	31	16	22	28	1.96
29703671--29703893	110	2.0	111	99	0	439	44	6	7	41	1.58
29712041--29712092	3	17.3	3	91	0	86	67	3	0	28	1.08
29715460--29715498	3	13.0	3	83	0	51	35	5	0	58	1.20
29715471--29715499	15	1.9	15	100	0	58	41	0	0	58	0.98
29717683--29717729	21	2.2	22	84	3	60	76	2	10	10	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29718199--29718346	77	1.9	77	87	0	215	28	15	10	45	1.78
29722787--29722861	37	2.0	37	100	0	150	36	10	13	40	1.79
29723054--29723115	32	1.9	32	90	6	99	54	1	6	37	1.36
29735376--29735430	24	2.7	18	72	27	56	30	5	23	40	1.77
29736801--29736860	30	2.0	30	96	0	111	25	16	25	33	1.96
29738586--29738793	91	2.3	89	85	4	258	31	14	22	31	1.94
29742596--29742633	18	2.1	18	85	9	51	18	5	15	60	1.53
29743410--29743469	17	3.5	17	78	13	52	30	8	18	43	1.79
29745107--29745131	12	2.1	12	100	0	50	44	16	16	24	1.86
29757770--29757821	25	2.1	25	86	10	72	67	0	1	30	1.02
29757992--29758052	32	1.9	32	83	6	79	39	1	27	31	1.66
29761039--29761085	14	3.1	15	84	6	51	44	2	2	51	1.25
29763995--29764023	13	2.2	13	100	0	58	65	0	6	27	1.18
29766469--29766518	3	16.7	3	100	0	100	32	34	0	34	1.58
29766517--29766556	3	13.3	3	94	0	71	0	30	0	70	0.88
29768007--29768040	16	2.2	16	89	5	52	73	5	11	8	1.24
29770530--29770728	33	6.0	33	83	6	278	27	15	13	44	1.82
29773833--29773861	15	1.9	15	100	0	58	31	13	27	27	1.94
29776603--29776714	56	2.0	56	98	0	215	31	17	16	33	1.93
29777572--29777612	3	13.7	3	100	0	82	68	31	0	0	0.90
29778415--29778488	19	3.8	19	89	7	112	37	14	9	37	1.79
29778426--29778488	21	3.1	21	88	9	103	38	14	7	39	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29779022--29779224	44	4.7	44	76	8	175	25	23	24	27	2.00
29779234--29780130	45	20.0	45	86	0	1134	30	22	16	30	1.96
29781355--29781443	47	1.9	46	88	2	133	16	19	21	42	1.89
29782526--29782591	25	2.6	25	83	9	71	56	6	18	19	1.62
29787043--29787140	21	4.7	21	79	14	67	38	16	8	36	1.78
29787043--29787100	22	2.6	22	81	7	64	41	17	5	36	1.72
29787079--29787153	19	3.8	19	89	6	123	34	16	12	37	1.85
29787941--29787997	15	3.5	15	71	17	51	49	1	1	47	1.22
29789573--29789712	43	3.3	43	91	0	217	23	29	18	28	1.98
29790062--29790108	21	2.2	21	88	0	67	2	44	17	36	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141