genome.fa.s1.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  115  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36865294--36865324	9	3.4	9	90	0	53	45	0	3	51	1.17
36865297--36865331	18	1.9	18	88	0	52	51	0	2	45	1.16
36865338--36865387	19	2.6	19	82	14	59	68	2	4	26	1.18
36866716--36866747	3	11.0	3	93	6	57	34	31	0	34	1.58
36869154--36869211	29	2.0	30	83	10	75	29	27	0	43	1.55
36870262--36870291	2	15.0	2	92	0	51	50	3	0	46	1.18
36870949--36870996	18	2.6	18	77	9	53	45	16	18	18	1.85
36870974--36871123	45	3.3	45	92	1	248	42	21	18	18	1.90
36876006--36876095	46	2.0	46	85	8	123	40	25	3	31	1.72
36876074--36876124	16	3.2	16	85	0	66	31	29	3	35	1.76
36879567--36879895	166	2.0	166	92	0	541	42	17	8	31	1.79
36882971--36883050	32	2.4	32	82	14	92	57	1	5	36	1.28
36882971--36883051	30	2.6	30	79	16	85	56	1	4	37	1.29
36883460--36883528	9	7.2	9	75	13	50	69	1	1	27	1.05
36883481--36883528	19	2.6	18	77	9	51	72	2	2	22	1.05
36883460--36883523	20	3.2	20	77	8	67	70	1	1	26	1.05
36883671--36883695	12	2.1	12	100	0	50	68	0	8	24	1.16
36885097--36885133	18	2.1	18	90	10	58	32	0	5	62	1.18
36885876--36885913	20	1.9	20	94	0	67	71	13	5	10	1.30
36886529--36886712	92	2.0	93	98	1	361	21	16	9	52	1.72
36895386--36895451	20	3.1	21	82	8	89	50	12	13	24	1.76
36895369--36895473	42	2.5	42	87	0	165	50	14	12	22	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36895384--36895453	22	3.3	22	82	8	99	50	11	14	24	1.75
36901229--36901266	10	3.8	10	86	10	51	78	0	21	0	0.74
36905183--36905239	28	2.0	28	89	3	87	29	24	22	22	1.99
36905211--36906210	43	23.3	43	97	0	1801	34	25	17	23	1.96
36911352--36911413	30	2.0	31	93	3	108	59	20	4	14	1.53
36912530--36912694	24	7.7	23	76	23	189	23	3	42	30	1.71
36912556--36912678	18	6.2	18	79	20	138	24	1	43	30	1.64
36912532--36912694	42	3.9	42	99	0	317	23	3	42	30	1.69
36913834--36913892	26	2.3	26	90	0	91	55	20	5	18	1.61
36916123--36916177	27	2.0	28	85	3	76	63	0	0	36	0.95
36916123--36916177	28	2.0	27	86	10	76	63	0	0	36	0.95
36916181--36916225	20	2.2	21	80	11	58	71	0	6	22	1.09
36916211--36916262	21	2.7	18	82	11	68	59	1	7	30	1.36
36916191--36916262	20	3.7	19	80	14	76	62	1	8	27	1.32
36916568--36916633	19	3.4	19	72	15	55	39	3	1	56	1.24
36925802--36925853	21	2.7	18	82	11	68	59	1	7	30	1.36
36925782--36925853	20	3.7	19	80	14	76	62	1	8	27	1.32
36926171--36926270	30	3.6	29	74	20	63	31	3	3	63	1.25
36928048--36928072	5	5.0	5	100	0	50	20	0	0	80	0.72
36928084--36928131	16	2.9	16	84	9	62	31	2	0	66	1.03
36929712--36929745	10	3.3	10	84	8	50	5	8	0	85	0.75
36931868--36931969	51	2.0	51	98	0	195	26	13	28	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36934102--36934134	12	2.5	14	90	9	52	42	12	0	45	1.41
36936535--36936641	52	2.0	53	96	3	198	32	17	23	26	1.97
36937071--36937171	49	2.0	50	98	1	195	23	21	20	33	1.97
36938928--36939004	6	13.0	6	81	13	79	77	0	20	1	0.83
36938928--36939008	13	6.2	13	80	9	85	77	0	20	1	0.83
36938929--36939004	19	3.8	20	77	19	79	77	0	21	1	0.84
36940103--36940179	6	13.0	6	81	13	79	77	0	20	1	0.83
36940103--36940183	13	6.2	13	80	9	85	77	0	20	1	0.83
36940104--36940179	19	3.8	20	77	19	79	77	0	21	1	0.84
36941476--36941768	99	2.9	99	91	1	453	30	24	22	22	1.99
36941598--36942245	149	4.3	150	74	4	572	30	23	22	23	1.99
36941756--36942229	100	4.7	100	89	1	655	30	23	21	24	1.99
36943338--36943363	11	2.4	11	100	0	52	19	26	46	7	1.77
36943842--36944314	3	157.7	3	98	0	921	32	0	0	66	0.95
36948669--36948702	15	2.3	15	94	0	59	76	0	8	14	1.01
36949962--36950144	44	4.2	44	64	8	111	28	18	25	26	1.98
36949917--36950560	128	5.0	129	86	4	709	30	18	25	25	1.98
36950652--36950994	44	7.8	44	71	8	234	29	18	25	26	1.98
36950956--36951054	44	2.2	45	78	7	105	28	17	21	33	1.95
36950548--36951090	218	2.5	217	87	1	748	30	18	23	28	1.97
36955036--36955117	28	2.9	28	87	0	119	39	18	12	30	1.87
36957963--36958059	49	2.0	49	87	0	140	47	6	14	31	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36961800--36961855	22	2.5	23	74	11	62	33	3	3	58	1.32
36966943--36966973	4	7.8	4	100	0	62	51	22	0	25	1.48
36970885--36970952	31	2.2	30	92	7	111	69	2	2	25	1.17
36970885--36970952	29	2.2	31	92	7	113	69	2	2	25	1.17
36970962--36970994	12	3.0	11	87	12	50	81	0	18	0	0.68
36971931--36972028	50	1.9	51	93	2	171	43	21	22	12	1.85
36973286--36974795	44	33.8	44	69	12	740	31	18	21	28	1.97
36973276--36973792	178	2.9	178	89	0	748	31	17	22	28	1.97
36973288--36974838	133	11.6	134	70	11	644	31	18	21	28	1.97
36973636--36974126	225	2.2	225	87	0	705	31	18	21	28	1.97
36973911--36974525	181	3.4	178	82	5	725	32	18	20	28	1.96
36973458--36974829	404	3.4	400	81	5	1622	31	18	21	28	1.97
36974320--36974804	223	2.2	224	87	3	697	32	18	21	28	1.96
36974636--36974888	44	5.9	44	73	11	161	29	19	23	27	1.98
36976284--36976309	10	2.6	10	100	0	52	0	11	0	88	0.52
36987018--36987051	16	2.1	16	88	0	50	2	26	0	70	1.01
36987852--36987912	30	2.0	30	87	0	86	40	27	6	24	1.80
36991557--36991591	18	2.0	17	88	5	52	45	0	0	54	0.99
36991719--36991770	16	3.2	16	94	0	86	34	36	0	28	1.58
36991754--36991995	120	2.0	121	97	2	461	26	20	24	28	1.99
36997108--36997144	17	2.2	17	90	0	56	18	13	0	67	1.23
37000959--37001004	17	2.6	17	89	3	74	8	23	50	17	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37025691--37025761	30	2.5	27	78	17	72	74	4	0	21	0.98
37026395--37026447	19	3.0	17	78	10	61	35	18	9	35	1.84
37026379--37026423	23	2.0	23	91	4	74	40	17	4	37	1.70
37026379--37026436	19	2.8	20	84	10	64	39	17	6	36	1.76
37033393--37033447	23	2.3	26	76	23	66	47	16	3	32	1.64
37040215--37040338	65	2.0	60	85	7	167	29	7	18	44	1.77
37042426--37042489	24	2.8	22	73	4	56	34	18	14	32	1.91
37042461--37042513	23	2.3	23	81	9	65	35	22	9	32	1.86
37046040--37046071	15	2.1	15	94	0	55	15	6	9	68	1.36
37047229--37047268	19	2.1	19	86	9	55	60	5	2	32	1.32
37069113--37069177	27	2.4	26	80	14	69	53	6	3	36	1.41
37080089--37080212	43	2.9	43	77	11	128	20	20	29	29	1.98
37082664--37082917	127	2.0	127	98	0	490	27	24	12	36	1.91
37086165--37086205	20	1.9	23	85	14	61	48	17	9	24	1.76
37086764--37086805	20	2.1	20	95	0	75	26	21	9	42	1.83
37087576--37087608	15	2.2	15	94	0	57	15	42	0	42	1.46
37089060--37089216	26	6.0	25	77	15	90	59	3	8	28	1.42
37089111--37089196	25	3.3	26	82	12	104	61	1	8	29	1.32
37089084--37089209	27	4.8	26	81	13	127	61	1	7	29	1.34
37089131--37089209	25	3.0	27	83	9	99	60	1	8	29	1.34
37089096--37089225	52	2.5	50	79	10	136	60	1	8	30	1.36
37089996--37090034	17	2.3	17	86	0	51	74	0	12	12	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37090680--37091876	143	8.4	143	85	1	1513	28	21	19	30	1.98
37091072--37091292	44	4.8	45	69	12	142	28	23	19	28	1.99
37101211--37101293	45	1.9	42	82	7	103	31	20	12	36	1.89
37103016--37103056	6	7.0	6	89	10	59	2	12	0	85	0.70
37103017--37103064	23	2.2	23	88	7	73	6	8	0	85	0.74
37105751--37105805	19	2.9	19	78	21	62	43	10	18	27	1.83
37105752--37105805	9	5.8	9	83	16	58	44	11	18	25	1.83
37107639--37108225	26	23.1	24	68	18	209	58	4	7	29	1.45
37107656--37107763	27	4.1	27	71	17	102	63	1	6	27	1.29
37107647--37107763	24	4.6	25	76	15	100	62	1	6	29	1.31

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141