genome.fa.s1.2.7.7.80.10.50.1000.71.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  71  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23133305--23133366	17	3.6	17	84	4	81	29	30	25	14	1.95
23133305--23133398	34	2.8	34	82	9	95	28	29	24	17	1.97
23133305--23133383	17	4.7	16	82	3	77	29	29	24	17	1.97
23137600--23137633	16	2.1	17	88	5	52	35	26	11	26	1.91
23140431--23140578	17	8.8	18	70	16	77	33	31	18	15	1.93
23143911--23143978	34	2.0	34	100	0	136	29	20	26	23	1.99
23148081--23148196	54	2.1	54	84	3	144	21	20	31	25	1.98
23172136--23172161	10	2.6	10	100	0	52	84	0	0	15	0.62
23173138--23173240	44	2.3	44	81	6	111	22	17	25	34	1.95
23173252--23173802	44	12.8	44	67	9	249	24	23	21	30	1.99
23173249--23173545	87	3.4	87	95	2	512	23	23	23	29	1.99
23173253--23173677	87	5.0	84	85	3	451	24	23	22	30	1.99
23184809--23184834	13	2.0	13	100	0	52	84	0	0	15	0.62
23192889--23192949	22	2.9	21	76	13	70	49	26	11	13	1.75
23192860--23192977	42	2.8	42	85	3	157	46	24	12	16	1.81
23198994--23199037	13	3.4	13	80	0	52	27	2	15	54	1.53
23207286--23207325	20	2.0	20	100	0	80	40	20	0	40	1.52
23207559--23207749	42	4.5	42	73	4	134	39	18	18	23	1.92
23207607--23207702	43	2.3	42	85	1	120	34	16	21	27	1.95
23207600--23207761	85	1.9	85	83	5	211	38	18	19	23	1.93
23207503--23207749	127	1.9	128	80	2	282	38	19	17	24	1.92
23209201--23209440	43	5.6	42	75	6	241	22	17	25	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23209159--23209466	42	7.3	42	76	6	273	23	16	24	36	1.94
23209156--23209475	85	3.8	85	90	0	462	23	16	24	35	1.95
23220019--23220444	214	2.0	214	81	5	504	33	18	21	26	1.96
23228135--23228166	14	2.3	14	94	0	55	21	12	31	34	1.91
23231955--23232121	83	2.0	84	98	1	327	41	9	8	40	1.68
23245746--23245771	4	6.5	4	100	0	52	76	0	23	0	0.78
23247815--23247854	20	2.0	20	90	0	62	22	7	2	67	1.28
23248305--23248373	35	1.9	36	88	8	106	26	4	5	63	1.35
23253815--23253839	5	5.0	5	100	0	50	20	0	0	80	0.72
23257848--23258888	519	2.0	519	100	0	2082	30	15	24	29	1.96
23260472--23260527	25	2.2	24	79	17	69	33	1	1	62	1.16
23286040--23286100	5	12.2	5	100	0	122	0	39	0	60	0.97
23295615--23295639	13	1.9	13	100	0	50	24	12	16	48	1.79
23296977--23297092	23	5.0	23	83	0	151	22	18	25	34	1.96
23300733--23300794	27	2.3	27	80	5	72	43	12	20	22	1.86
23300773--23300968	27	7.3	27	78	7	184	43	20	12	22	1.86
23300733--23300969	54	4.4	54	81	6	232	43	19	14	22	1.87
23300729--23300969	81	3.0	80	81	4	252	43	19	14	22	1.86
23302069--23302105	9	4.1	9	92	0	65	29	10	13	45	1.77
23302724--23302827	50	2.1	50	96	0	190	50	2	3	43	1.35
23303101--23303153	13	4.1	13	80	0	70	33	28	9	28	1.88
23305373--23305408	18	2.0	18	100	0	72	66	11	5	16	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23316800--23316839	16	2.6	15	80	7	53	62	7	30	0	1.23
23317779--23317811	14	2.4	14	100	0	66	12	30	0	57	1.35
23325245--23325275	16	1.9	16	100	0	62	19	19	25	35	1.95
23325391--23325421	13	2.4	13	94	0	53	45	3	22	29	1.68
23331382--23331458	27	2.9	27	84	3	102	22	20	15	41	1.90
23331508--23331633	45	2.8	45	84	4	139	24	22	13	39	1.90
23333077--23333134	30	1.9	30	82	6	73	34	10	3	51	1.53
23333413--23333451	21	1.9	20	84	5	51	41	7	0	51	1.31
23334565--23334589	12	2.1	12	100	0	50	24	0	0	76	0.80
23334811--23334857	22	2.1	22	84	7	60	74	2	10	12	1.16
23336236--23336312	5	15.4	5	91	0	100	37	20	6	35	1.79
23341950--23342002	24	2.3	23	76	20	58	41	1	3	52	1.30
23351789--23351818	1	30.0	1	100	0	60	0	0	0	100	0.00
23355530--23355575	23	1.9	25	86	8	69	36	0	4	58	1.18
23356493--23356582	35	2.6	35	83	3	110	36	14	22	26	1.92
23364297--23364339	19	2.3	19	100	0	86	48	4	0	46	1.22
23365741--23365937	98	2.0	98	96	0	367	44	21	12	21	1.84
23367714--23367763	20	2.6	19	78	9	57	34	0	0	66	0.92
23367733--23367786	21	2.6	21	77	11	56	42	0	5	51	1.25
23372384--23372416	17	2.0	17	88	5	50	54	0	9	36	1.32
23376120--23376177	22	2.6	22	78	5	55	15	12	36	36	1.85
23384238--23384270	15	2.2	15	100	0	66	27	6	6	60	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23394306--23394343	3	12.7	3	88	0	58	31	2	2	63	1.22
23394398--23394468	20	3.2	20	73	21	70	25	4	7	63	1.38
23398760--23399053	40	7.7	39	71	18	210	30	22	22	24	1.99
23399091--23399134	22	2.0	21	86	8	61	25	45	0	29	1.54
23402980--23403059	37	2.2	37	95	0	142	42	17	6	33	1.74
23403570--23403629	18	3.4	18	64	13	52	43	6	10	40	1.64
23403689--23404015	177	1.8	178	98	0	629	38	6	12	41	1.70
23403982--23404229	43	5.8	43	88	2	365	21	17	33	27	1.96
23406142--23406199	9	6.4	9	83	0	71	43	22	6	27	1.79
23406441--23406494	18	2.9	18	86	2	72	11	1	46	40	1.50
23413829--23413882	24	2.2	24	83	6	65	35	20	25	18	1.95
23417207--23417256	23	2.2	23	82	13	59	18	4	2	76	1.04
23419596--23419633	18	2.1	19	85	5	51	18	26	2	52	1.58
23423567--23423800	87	2.7	87	95	0	405	26	15	22	35	1.94
23426540--23426595	28	2.0	28	100	0	112	21	17	25	35	1.95
23429625--23429677	22	2.4	22	80	0	61	33	22	15	28	1.94
23432224--23432259	18	2.1	16	90	10	54	61	2	5	30	1.33
23435336--23435394	24	2.5	24	82	0	64	33	18	13	33	1.90
23435443--23435575	34	3.9	34	81	0	149	27	21	24	26	1.99
23435503--23435559	17	3.4	17	70	18	55	28	22	22	26	1.99
23435745--23435839	14	6.8	14	76	0	91	26	16	17	38	1.91
23437354--23437430	19	4.0	19	79	5	75	66	2	1	29	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23437354--23437414	19	3.3	18	84	6	77	63	1	1	32	1.13
23437525--23437565	16	2.3	18	88	12	59	29	0	0	70	0.87
23439419--23439443	10	2.5	10	100	0	50	8	0	0	92	0.40
23444295--23444337	16	2.4	19	77	14	56	74	2	16	6	1.14
23444439--23444484	20	2.4	20	82	7	60	50	0	4	45	1.21
23445243--23445290	24	2.0	24	84	12	62	41	2	0	56	1.11
23445376--23447351	988	2.0	988	100	0	3952	41	9	10	38	1.73
23450364--23450437	28	2.6	28	82	0	85	20	5	21	52	1.66
23450384--23450437	14	3.9	14	72	0	54	22	3	22	51	1.63
23454329--23454982	75	8.9	75	98	0	1206	44	2	14	38	1.58
23458161--23458205	23	2.0	23	86	4	65	40	20	4	35	1.72
23458184--23458237	21	2.7	19	78	10	63	38	16	9	35	1.81
23458199--23458238	21	1.9	21	100	0	80	37	15	10	37	1.80
23458551--23459025	237	2.0	237	99	0	941	42	6	3	46	1.47
23459639--23459679	16	2.6	16	84	0	55	43	17	14	24	1.86
23459850--23460415	234	2.4	232	83	8	676	45	7	8	38	1.61
23460594--23460636	16	2.9	14	83	10	59	55	4	0	39	1.20
23469321--23469374	24	2.2	24	93	0	90	31	18	14	35	1.91
23471872--23471921	25	2.0	25	96	0	91	34	4	26	36	1.75
23473124--23473155	7	4.6	7	100	0	64	40	12	31	15	1.85
23473131--23473244	51	2.2	51	95	0	201	32	14	25	28	1.94
23483383--23483527	23	6.2	23	85	3	191	27	13	19	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23483383--23483538	71	2.2	69	84	4	179	28	13	19	38	1.89
23484162--23484231	35	2.0	35	100	0	140	22	14	28	34	1.93
23489788--23490026	50	4.7	50	76	3	165	23	27	20	28	1.99
23491522--23491546	13	1.9	13	100	0	50	32	4	24	40	1.73
23492655--23492779	43	2.9	42	78	14	130	21	19	29	29	1.97
23496378--23496408	15	2.1	15	100	0	62	29	0	19	51	1.47
23496537--23496674	47	2.9	46	81	10	161	26	13	20	39	1.89
23496537--23496685	23	6.3	23	81	10	142	26	13	20	38	1.90
23505163--23505219	11	5.2	11	74	16	55	54	1	1	42	1.21
23507940--23508119	90	2.0	90	98	0	351	33	8	16	41	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141