genome.fa.s1.2.7.7.80.10.50.1000.27.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  27  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8986419--8986446	12	2.3	12	100	0	56	21	28	0	50	1.49
8989003--8989056	7	7.7	7	80	0	54	48	29	0	22	1.51
8989003--8989055	14	3.8	14	87	5	72	49	28	0	22	1.50
8990078--8990345	126	2.1	125	94	0	473	26	23	19	30	1.98
8991301--8991340	19	2.1	19	86	9	55	42	0	0	57	0.98
8992719--8992764	6	7.7	6	90	0	74	36	15	47	0	1.45
8998875--8998910	6	6.2	6	90	6	56	2	50	16	30	1.60
9015551--9015596	21	2.2	21	92	3	76	69	15	2	13	1.28
9019906--9020469	50	11.3	50	70	3	335	23	20	23	32	1.98
9019910--9020498	100	5.9	100	83	3	702	23	21	23	31	1.98
9020552--9021188	98	6.5	98	77	10	579	28	19	17	34	1.95
9020713--9020878	44	3.5	44	68	19	129	30	19	16	33	1.94
9020854--9020971	44	2.7	44	82	2	139	28	16	22	32	1.96
9021146--9021403	44	5.6	44	74	13	234	29	21	17	31	1.96
9021149--9021403	98	2.8	91	75	10	250	30	20	18	30	1.96
9020751--9021376	142	4.4	142	80	10	761	28	20	18	32	1.96
9023795--9023843	6	8.3	6	80	17	50	14	2	10	73	1.18
9024986--9025112	11	12.4	11	66	22	55	56	0	2	40	1.18
9024997--9025128	40	3.3	39	84	5	167	59	0	2	37	1.15
9032398--9032476	13	6.5	13	73	16	80	49	11	1	37	1.47
9032398--9032476	36	2.2	36	95	0	140	49	11	1	37	1.47
9032434--9032485	23	2.3	23	93	0	86	50	9	1	38	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9032434--9032498	23	2.8	23	83	4	69	52	9	1	36	1.43
9036820--9036855	19	1.9	18	88	5	54	63	2	19	13	1.41
9036978--9037002	13	1.9	13	100	0	50	36	0	0	64	0.94
9049259--9049297	20	2.0	20	84	0	51	28	12	7	51	1.67
9049625--9049706	25	3.2	24	66	21	67	41	1	0	57	1.06
9049599--9049707	53	2.0	54	98	1	211	38	1	0	59	1.08
9049599--9049682	28	3.0	29	67	19	72	35	2	0	61	1.09
9049607--9049705	29	3.6	27	74	20	107	41	1	0	57	1.05
9051954--9051993	21	1.9	21	85	10	55	37	2	12	47	1.55
9077392--9077461	31	2.3	31	82	4	90	40	21	8	30	1.83
9077392--9077475	31	2.8	30	80	7	89	40	20	10	28	1.86
9080126--9080172	24	2.0	24	91	0	76	29	21	10	38	1.87
9083324--9083418	46	2.1	46	97	0	181	42	22	2	33	1.65
9083336--9083409	24	3.2	24	62	19	57	36	24	2	36	1.70
9087877--9088045	84	2.0	84	98	0	329	39	11	17	31	1.85
9088149--9088187	18	2.1	18	85	9	51	33	5	5	56	1.43
9088154--9088199	17	2.7	18	83	6	60	34	2	4	58	1.30
9088305--9088330	13	2.0	13	100	0	52	38	7	15	38	1.76
9089246--9089275	14	2.1	14	100	0	60	33	6	0	60	1.23
9090833--9090878	21	2.2	21	77	11	51	50	10	0	39	1.38
9090815--9090932	62	1.9	62	91	0	191	50	11	5	33	1.59
9094939--9094997	29	2.0	30	86	3	84	32	1	11	54	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9096546--9096668	57	2.2	58	92	2	205	6	6	21	65	1.40
9103959--9104001	21	2.0	22	86	4	61	51	4	0	44	1.22
9106087--9106135	17	2.9	17	82	8	55	26	6	0	67	1.14
9114195--9114334	57	2.4	56	82	8	154	29	20	27	23	1.99
9114530--9114666	54	2.5	54	92	0	238	25	18	24	31	1.98
9114415--9114734	175	1.8	175	100	0	640	24	18	27	30	1.98
9121459--9121886	213	2.0	214	99	0	849	36	16	11	35	1.85
9122007--9122037	11	2.8	11	90	0	53	32	0	0	67	0.91
9122007--9122050	22	2.0	22	82	8	54	36	0	2	61	1.09
9124840--9124876	18	2.1	18	89	0	56	59	8	0	32	1.27
9125807--9125882	9	8.4	9	85	5	109	40	22	10	26	1.86
9125985--9126027	18	2.4	18	88	0	59	11	2	44	41	1.53
9132849--9132961	27	4.2	27	98	1	219	28	15	15	40	1.88
9134174--9134313	40	3.6	39	71	10	106	29	22	20	28	1.98
9135159--9135235	4	18.2	4	75	19	68	1	20	5	72	1.11
9138999--9139279	140	2.0	141	97	2	539	34	14	19	31	1.91
9160500--9160535	13	2.6	14	91	8	56	86	11	0	2	0.68
9167154--9167178	10	2.5	10	100	0	50	52	0	0	48	1.00
9171949--9172000	24	2.2	24	89	0	77	34	3	7	53	1.48
9180697--9180779	41	2.0	41	88	4	123	25	18	32	24	1.97
9185312--9185365	26	2.0	26	82	10	63	61	7	0	31	1.24
9188943--9188994	25	2.1	25	82	7	61	67	0	3	28	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9189128--9189171	21	2.1	21	83	4	54	40	2	2	54	1.25
9189704--9189749	22	2.1	22	84	8	58	52	2	36	8	1.45
9191361--9191552	100	1.9	100	88	0	285	32	16	13	36	1.88
9198448--9198508	26	2.3	27	85	5	88	29	1	1	67	1.10
9199335--9199382	22	2.1	24	88	7	73	68	4	0	27	1.07
9199377--9199438	30	2.1	30	90	3	99	50	9	1	38	1.45
9205354--9205398	19	2.4	19	76	0	54	57	6	11	24	1.57
9207036--9207091	23	2.5	22	81	16	62	46	0	7	46	1.30
9214501--9214543	22	2.0	22	85	0	59	48	6	4	39	1.51
9216535--9216564	10	2.8	11	90	10	53	76	6	6	10	1.15
9219322--9219359	15	2.4	17	82	13	53	34	7	0	57	1.28
9221221--9221297	40	1.9	41	86	2	111	49	1	6	42	1.36
9221803--9222074	135	2.0	136	99	0	537	44	6	5	43	1.52
9224012--9224059	19	2.6	18	81	12	53	35	2	6	56	1.36
9224084--9224123	21	1.9	21	94	0	71	25	0	7	67	1.16
9234952--9234998	23	2.0	24	87	4	69	74	0	2	23	0.93
9235912--9235954	19	2.3	18	81	14	52	25	0	4	69	1.07
9235923--9235966	18	2.3	19	84	7	54	31	0	2	65	1.05
9236365--9236390	7	3.7	7	100	0	52	88	0	0	11	0.52
9237425--9237450	6	4.3	6	100	0	52	15	19	30	34	1.93
9238703--9238781	41	1.9	41	100	0	158	15	24	12	48	1.79
9247104--9247151	23	2.1	23	100	0	96	25	22	22	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9247914--9247954	21	1.9	22	95	5	75	60	0	0	39	0.96
9262330--9262378	18	2.9	17	82	8	55	2	22	4	71	1.13
9262447--9263611	582	2.0	583	99	0	2323	31	18	13	36	1.90
9279595--9279637	22	2.0	22	86	4	61	60	0	0	39	0.97
9281694--9281718	12	2.1	12	100	0	50	0	24	0	76	0.80
9284472--9284513	18	2.4	18	84	4	59	38	9	0	52	1.34
9287868--9288446	311	1.9	311	85	1	820	45	11	10	33	1.73
9289042--9289073	16	2.0	16	93	0	55	46	0	0	53	1.00
9289484--9289555	31	2.4	31	81	11	78	34	9	12	43	1.76
9289482--9289539	31	1.9	31	86	6	84	32	8	13	44	1.75
9290332--9290367	14	2.6	14	86	0	54	27	0	11	61	1.30
9290302--9290349	25	2.0	25	91	4	80	35	0	12	52	1.40
9290777--9290822	24	2.0	23	91	4	74	69	0	2	28	1.00
9290758--9290819	31	2.0	31	93	3	108	72	0	1	25	0.94
9315922--9315988	31	2.1	32	83	2	82	32	10	11	44	1.75
9319266--9319323	27	2.2	28	87	9	86	44	5	0	50	1.24
9320036--9320077	20	2.2	19	86	4	57	23	0	4	71	1.05
9320084--9320109	13	2.0	13	100	0	52	76	0	0	23	0.78
9320153--9320184	16	2.0	16	93	0	55	84	6	3	6	0.86
9320163--9320198	9	3.9	9	88	3	54	86	8	2	2	0.77
9328776--9328822	24	2.0	24	87	8	69	31	10	0	57	1.33
9328776--9328813	12	3.2	12	82	10	51	34	10	0	55	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9328811--9328863	28	2.0	27	81	7	63	35	11	3	49	1.57
9328941--9328972	14	2.3	15	89	10	50	6	3	6	84	0.86
9328969--9329008	18	2.3	17	91	8	71	27	5	0	67	1.11
9329974--9330025	27	1.9	27	96	0	95	19	36	26	17	1.94
9330083--9330118	10	3.6	10	88	0	54	2	5	2	88	0.67
9330084--9330127	20	2.2	20	87	0	61	9	4	2	84	0.85
9330118--9330186	27	2.5	29	90	6	108	49	0	10	40	1.37
9330117--9330186	28	2.6	26	86	10	97	48	0	10	41	1.36
9332905--9332941	11	3.4	11	96	0	65	43	5	0	51	1.24
9345112--9345146	2	17.5	2	93	0	61	48	2	0	48	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141