genome.fa.s1.2.7.7.80.10.50.1000.135.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  135  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43722379--43722504	43	2.9	43	81	4	121	28	15	24	30	1.96
43734687--43734725	18	2.1	19	85	4	53	41	15	15	28	1.87
43734648--43735136	247	2.0	247	91	0	798	30	29	16	24	1.96
43743108--43743183	34	2.2	35	92	2	127	35	5	9	50	1.57
43743067--43743153	43	2.0	43	95	2	158	37	4	10	47	1.58
43743180--43743426	59	4.2	59	89	1	379	47	3	4	44	1.39
43743180--43743426	118	2.1	118	94	1	433	47	3	4	44	1.39
43743314--43743351	19	2.0	20	89	5	60	52	5	0	42	1.24
43746164--43746206	18	2.4	18	88	3	61	76	2	2	18	1.00
43746168--43746214	18	2.7	18	83	3	51	76	4	4	14	1.09
43747637--43747676	20	2.0	20	95	0	71	65	0	7	27	1.20
43749242--43749388	50	2.9	50	73	0	132	27	21	19	30	1.98
43749461--43750727	44	29.7	44	81	8	1373	28	25	17	28	1.97
43749720--43749791	37	1.9	38	85	2	101	23	25	19	31	1.98
43749461--43750727	126	9.9	127	81	9	1144	28	25	17	28	1.97
43749461--43750727	170	7.4	171	85	5	1347	28	25	17	28	1.97
43750772--43751019	79	3.0	78	77	12	280	18	23	27	31	1.97
43750851--43751033	88	2.1	88	88	2	269	20	21	27	30	1.98
43757734--43757797	21	3.4	19	83	12	69	34	20	7	37	1.81
43757742--43757797	21	2.8	19	84	10	76	35	19	8	35	1.83
43757753--43757796	21	2.1	21	95	0	79	38	15	9	36	1.80
43763116--43763213	48	2.0	48	100	0	196	32	15	10	41	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43766561--43766663	41	2.5	41	90	3	154	33	26	16	23	1.95
43770599--43770638	19	2.1	19	85	4	53	47	7	2	42	1.45
43770666--43770883	103	2.1	103	79	3	233	36	17	10	35	1.84
43771851--43771904	17	3.2	17	75	14	58	66	16	5	11	1.40
43772639--43772672	11	3.0	11	86	4	50	5	29	0	64	1.17
43782267--43782326	32	1.9	31	82	3	75	25	3	16	55	1.57
43786867--43787099	27	8.7	26	88	3	322	42	22	20	14	1.88
43789045--43789079	16	2.2	16	94	0	61	60	8	0	31	1.27
43804068--43804111	15	2.9	15	100	0	88	34	18	13	34	1.90
43807818--43808102	50	5.7	50	86	0	363	21	29	22	26	1.99
43813958--43814010	20	2.7	20	77	16	56	15	18	3	62	1.47
43814650--43814770	25	4.7	26	70	6	93	28	19	25	25	1.99
43814652--43814770	52	2.3	52	91	0	193	29	20	25	25	1.99
43819026--43819101	31	2.5	31	97	0	143	28	14	10	46	1.78
43827900--43827931	16	1.9	17	93	6	57	46	0	9	43	1.35
43828595--43828625	15	2.1	15	93	0	53	54	0	6	38	1.26
43840930--43840979	26	1.9	26	87	0	73	46	10	2	42	1.49
43842119--43842302	78	2.4	78	82	5	230	29	12	12	45	1.79
43845002--43845042	20	2.0	21	85	4	57	75	4	4	14	1.14
43846364--43846554	40	4.8	40	83	1	213	35	17	29	17	1.93
43846413--43846477	20	3.2	20	71	16	62	27	18	35	18	1.94
43846362--43846554	80	2.4	80	86	1	253	35	18	29	17	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43846426--43846500	20	3.8	20	73	7	71	30	21	33	14	1.93
43846446--43846509	20	3.2	20	69	8	58	29	18	32	18	1.95
43846316--43846555	40	6.0	40	76	5	209	35	17	29	17	1.93
43846903--43846941	19	2.2	18	86	9	53	35	7	5	51	1.53
43847454--43847487	13	2.6	13	90	0	50	17	0	5	76	0.98
43849299--43850258	478	2.0	478	97	0	1832	37	15	20	26	1.92
43853436--43853493	30	1.9	30	92	0	98	20	6	27	44	1.77
43865809--43865848	20	2.0	20	85	0	53	42	7	10	40	1.67
43867180--43867248	25	2.8	25	82	4	68	30	23	21	24	1.99
43867205--43867265	25	2.4	25	83	5	70	29	21	22	26	1.99
43867229--43867284	25	2.3	24	81	3	58	32	21	21	25	1.98
43874763--43874819	25	2.3	24	84	3	69	28	22	19	29	1.98
43874828--43874906	25	3.2	25	81	3	79	35	21	20	22	1.96
43878808--43878856	13	4.0	12	89	10	73	83	6	2	8	0.87
43878790--43878856	25	2.6	25	84	13	82	80	4	4	10	0.99
43879856--43879893	19	2.0	19	100	0	76	52	5	10	31	1.58
43881610--43881704	29	3.2	28	73	4	73	30	15	17	35	1.92
43883715--43883897	50	3.7	50	89	0	276	25	22	30	21	1.99
43888717--43888883	50	3.3	50	84	1	219	20	30	22	26	1.98
43890008--43890048	21	1.9	22	85	5	57	46	12	2	39	1.54
43893772--43893857	29	2.9	29	72	8	84	31	10	16	41	1.82
43896012--43896054	20	2.2	20	100	0	86	30	20	30	18	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43920506--43920535	16	1.9	16	93	6	53	50	20	0	30	1.49
43926731--43926760	16	1.9	16	93	6	53	50	20	0	30	1.49
43934140--43934203	27	2.4	27	97	0	119	48	0	0	51	1.00
43936123--43936152	15	2.1	15	93	6	53	53	6	0	40	1.27
43939899--43939982	3	28.7	3	75	13	68	36	3	0	59	1.15
43940018--43940070	2	26.0	2	78	3	52	43	5	1	49	1.37
43940427--43940464	20	1.9	20	89	10	60	28	13	0	57	1.36
43940506--43940816	106	2.9	107	87	2	448	29	16	18	35	1.92
43941000--43941044	22	2.0	22	83	8	56	46	11	6	35	1.66
43945997--43946041	3	15.0	3	100	0	90	66	0	0	33	0.92
43962261--43962368	56	1.9	55	92	1	180	38	9	12	39	1.74
43967349--43967617	25	10.8	26	72	14	169	33	19	26	20	1.96
43967367--43967617	74	3.4	74	76	13	223	34	19	26	19	1.96
43967741--43967781	8	5.1	8	100	0	82	26	0	12	60	1.31
43970188--43970294	55	1.9	55	92	3	180	38	9	13	39	1.76
43970685--43970730	18	2.6	18	92	0	74	45	10	26	17	1.81
43973212--43973247	16	2.2	16	100	0	72	25	0	36	38	1.56
43977355--43977392	9	4.3	9	84	15	53	55	0	0	44	0.99
43977369--43977427	23	2.7	23	79	7	61	50	3	1	44	1.28
43980852--43980890	2	19.5	2	100	0	78	51	0	48	0	1.00
43983452--43983499	20	2.3	22	86	10	66	45	6	10	37	1.64
43985039--43985271	50	4.7	49	80	3	209	27	21	28	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43985039--43985220	50	3.7	49	83	1	213	26	21	29	22	1.99
43985473--43985521	20	2.5	20	81	15	66	57	6	24	12	1.58
43989334--43989397	20	3.2	20	74	14	60	28	21	31	18	1.97
43989401--43989443	20	2.2	20	86	0	59	48	16	23	11	1.78
43993924--43993996	36	2.0	36	84	5	94	21	24	9	43	1.82
43996231--43996277	24	2.0	24	91	0	76	19	38	21	21	1.94
43996996--43997043	20	2.4	20	92	0	87	31	22	27	18	1.97
43997052--43997165	60	1.9	60	83	0	147	46	18	24	10	1.80
43997052--43997165	20	5.7	20	81	2	122	46	18	24	10	1.80
44005589--44005640	20	2.6	20	90	0	86	40	21	26	11	1.87
44009799--44009831	17	2.0	17	88	5	50	63	12	6	18	1.48
44012829--44012995	20	8.4	19	78	7	122	43	14	26	15	1.85
44012835--44012995	39	4.1	39	76	7	164	42	14	27	15	1.85
44012830--44012995	59	2.8	58	80	2	197	43	14	26	15	1.85
44022866--44022905	20	2.0	20	100	0	80	15	20	35	30	1.93
44025196--44025563	27	13.7	27	85	0	459	44	19	18	17	1.87
44025777--44025827	26	2.0	26	88	7	77	17	25	21	35	1.95
44025935--44025998	28	2.3	28	86	2	85	18	21	25	34	1.96
44029803--44029853	18	2.8	18	74	11	50	27	31	11	29	1.92
44029812--44029870	27	2.2	27	84	6	75	28	30	10	30	1.90
44029803--44029890	36	2.4	36	81	3	88	28	31	12	27	1.93
44041279--44041305	7	3.9	7	100	0	54	14	0	0	85	0.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44044923--44045072	59	2.6	58	73	4	140	20	28	13	38	1.90
44051053--44051118	29	2.3	26	80	16	78	31	4	4	59	1.38
44051433--44051484	3	17.3	3	100	0	104	67	0	32	0	0.91
44052258--44052298	3	13.7	3	100	0	82	34	31	0	34	1.58
44052301--44052333	3	11.0	3	93	0	57	0	30	0	69	0.88
44052459--44052527	30	2.3	30	80	7	77	21	10	21	46	1.81
44055535--44055639	3	35.3	3	79	9	81	31	3	0	63	1.18
44058824--44058854	15	2.1	15	100	0	62	32	12	0	54	1.38
44093092--44093241	43	3.5	44	80	6	148	28	23	15	32	1.95
44093817--44093871	26	2.1	26	96	0	101	47	14	3	34	1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141