genome.fa.s1.2.7.7.80.10.50.1000.137.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  137  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44481524--44481755	41	5.7	40	75	15	190	23	25	21	29	1.99
44481531--44481755	123	1.8	123	85	5	321	22	26	21	29	1.99
44481655--44481768	41	2.8	41	84	7	108	21	24	23	29	1.99
44481526--44481755	82	2.8	81	83	6	286	23	26	21	29	1.99
44482566--44483436	433	2.0	433	99	0	1724	36	17	9	36	1.83
44484562--44484643	19	4.3	19	80	0	56	20	26	25	26	1.99
44485085--44485134	24	2.1	24	96	0	91	50	16	6	28	1.68
44496832--44496885	21	2.6	21	83	13	60	24	5	1	68	1.21
44497342--44497397	3	18.7	3	92	7	96	32	0	0	67	0.91
44497728--44497752	13	1.9	13	100	0	50	64	4	0	32	1.12
44501329--44501380	27	1.9	27	84	7	70	67	3	7	21	1.32
44502059--44502096	13	3.0	13	96	3	69	31	0	0	68	0.90
44502336--44502384	20	2.5	19	80	6	53	67	12	10	10	1.43
44502342--44502385	20	2.2	20	87	0	61	68	11	11	9	1.40
44503214--44503250	19	1.9	19	88	0	56	40	0	5	54	1.24
44507631--44507712	18	4.6	18	92	0	128	13	41	3	41	1.62
44514624--44514668	22	2.0	22	95	0	81	42	4	33	20	1.72
44517018--44517067	25	2.0	26	88	4	75	66	12	10	12	1.46
44533448--44534119	50	13.5	50	69	10	435	33	25	19	21	1.97
44533397--44534223	99	8.3	99	91	1	1207	32	25	20	22	1.98
44535841--44535878	4	9.5	4	88	0	58	26	5	0	68	1.11
44537158--44537210	19	2.7	21	74	14	58	37	0	1	60	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44540300--44540366	34	1.9	35	87	3	100	46	14	7	31	1.73
44549059--44549201	41	3.5	41	90	1	209	30	20	18	31	1.96
44549064--44549217	82	1.9	81	85	5	211	30	19	19	30	1.96
44549324--44549439	61	1.9	61	82	3	144	37	18	9	35	1.83
44552016--44552210	75	2.6	75	86	1	257	29	16	22	31	1.96
44572967--44573110	76	1.9	75	79	1	162	29	9	21	39	1.85
44581544--44581773	120	1.9	120	92	0	388	25	14	18	41	1.89
44594809--44594864	24	2.3	25	84	12	80	16	33	0	50	1.45
44596116--44596140	13	1.9	13	100	0	50	24	20	16	40	1.91
44599600--44599671	35	2.1	35	94	0	126	40	12	23	23	1.89
44605720--44605753	14	2.4	14	90	0	50	41	8	0	50	1.34
44615661--44615711	16	3.2	16	88	0	75	23	27	5	43	1.77
44624053--44624103	2	25.5	2	95	0	93	0	47	0	52	1.00
44630667--44630697	16	1.9	16	93	0	53	45	22	22	9	1.81
44634260--44634289	15	2.0	15	100	0	60	26	26	20	26	1.99
44635000--44635056	25	2.3	25	90	0	87	21	19	22	36	1.95
44636362--44636404	21	2.0	21	95	0	77	13	30	18	37	1.90
44641931--44641959	8	3.6	8	100	0	58	24	13	27	34	1.93
44642047--44642121	23	3.3	23	92	0	123	17	21	26	34	1.95
44645721--44645772	16	3.0	16	75	13	50	50	0	25	25	1.50
44645885--44645927	22	2.0	22	95	4	79	41	0	34	23	1.55
44646151--44646187	9	4.1	9	85	0	56	32	10	10	45	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44649541--44649604	21	3.0	21	90	0	101	15	29	17	37	1.91
44650833--44651241	50	8.2	50	82	4	423	20	16	26	35	1.94
44653562--44653750	40	4.7	38	81	8	207	34	18	3	43	1.66
44653562--44653759	80	2.5	79	89	0	297	35	18	3	42	1.65
44653562--44653693	13	9.9	13	70	14	90	34	20	3	41	1.68
44658303--44658341	21	2.0	20	90	10	62	20	7	15	56	1.63
44658914--44658959	20	2.3	20	85	10	60	43	17	13	26	1.85
44660083--44660132	25	2.0	25	85	14	68	38	22	0	40	1.54
44660570--44660601	2	16.0	2	100	0	64	50	0	0	50	1.00
44661277--44661326	25	2.0	25	85	14	68	38	22	0	40	1.54
44661764--44661795	2	16.0	2	100	0	64	50	0	0	50	1.00
44662518--44662567	16	3.1	16	79	0	55	16	10	6	68	1.38
44667690--44667731	22	1.9	22	100	0	84	26	14	14	45	1.83
44690680--44690711	5	6.4	5	100	0	64	0	0	18	81	0.70
44697533--44697668	68	2.0	68	97	0	254	41	13	21	22	1.88
44699439--44699471	17	2.0	17	88	5	50	15	0	21	63	1.30
44701922--44702000	39	2.0	39	97	0	149	45	15	11	27	1.80
44701921--44701987	17	3.6	17	72	18	62	46	13	11	28	1.79
44703499--44703545	20	2.3	20	78	7	51	29	29	14	25	1.95
44712585--44712663	39	2.0	39	90	0	122	45	12	11	30	1.77
44717432--44717457	13	2.0	13	100	0	52	30	30	23	15	1.95
44726474--44727575	114	9.7	114	96	0	1849	25	24	20	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44727912--44727950	20	2.0	20	90	9	64	66	0	0	33	0.92
44728133--44728204	9	7.8	9	74	11	65	34	2	38	23	1.70
44728734--44728794	20	3.1	19	83	9	61	68	4	1	24	1.18
44729522--44729550	2	14.5	2	100	0	58	51	0	0	48	1.00
44734899--44734927	2	14.5	2	100	0	58	51	0	0	48	1.00
44744749--44744807	27	2.2	27	84	0	82	35	11	22	30	1.90
44744756--44744829	27	2.7	26	85	4	85	29	12	24	33	1.91
44744946--44744996	26	2.0	26	84	7	68	37	5	23	33	1.79
44756478--44756775	29	10.4	29	77	2	253	36	21	16	25	1.93
44756538--44756753	88	2.5	86	82	3	270	38	21	14	25	1.91
44756529--44756748	117	1.9	116	85	0	305	39	20	15	25	1.91
44779825--44779856	15	2.2	14	94	5	55	56	0	3	40	1.15
44780935--44780981	21	2.2	22	96	3	87	42	14	0	42	1.46
44786953--44787047	29	3.3	29	73	7	86	22	14	24	38	1.91
44792019--44792056	19	2.0	19	90	10	60	34	26	5	34	1.79
44794209--44794462	121	2.1	121	96	0	472	44	7	9	38	1.64
44797568--44797603	3	12.0	3	100	0	72	33	0	0	66	0.92
44798891--44798925	10	3.2	11	88	12	54	17	37	0	45	1.48
44798935--44799021	29	3.2	29	62	26	73	31	25	0	43	1.55
44798906--44799028	51	2.4	51	95	1	221	28	26	0	44	1.54
44800002--44800026	7	3.6	7	100	0	50	28	0	12	60	1.32
44800542--44800576	18	1.9	18	94	0	61	25	31	8	34	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44800987--44801085	44	2.3	43	85	7	128	41	0	10	48	1.37
44800999--44801085	44	2.0	45	88	6	133	40	0	10	49	1.37
44801053--44801145	25	3.7	25	97	0	168	46	0	12	40	1.42
44801295--44802273	23	40.8	23	74	20	725	46	25	0	27	1.58
44801295--44802273	118	8.2	119	80	15	1078	46	25	0	27	1.58
44801295--44802273	95	10.2	96	78	16	851	46	25	0	27	1.58
44801661--44802223	45	12.4	43	76	18	442	46	25	0	27	1.58
44802260--44802303	23	2.0	21	91	8	70	43	29	0	27	1.55
44802305--44802516	111	1.9	111	94	0	370	40	9	7	42	1.67
44805114--44805465	124	2.8	127	87	5	488	33	21	15	30	1.94
44805114--44805465	126	2.8	124	86	5	496	33	21	15	30	1.94
44805970--44806005	12	3.0	12	91	0	63	44	33	16	5	1.71
44805970--44806005	18	2.0	18	88	0	54	44	33	16	5	1.71
44813118--44813193	32	2.4	32	84	0	89	25	23	5	46	1.73
44817613--44817688	32	2.4	32	84	0	89	25	23	5	46	1.73
44824830--44824896	33	2.0	33	100	0	134	23	20	17	37	1.94
44828294--44828359	6	11.7	6	73	9	50	66	0	19	13	1.24
44828322--44828363	11	3.8	11	81	9	50	66	0	21	11	1.23
44828293--44828347	26	2.0	28	89	6	87	67	0	20	12	1.23
44832131--44832209	39	2.0	39	81	13	92	26	31	10	31	1.89
44842913--44843004	41	2.2	41	80	0	112	21	23	38	16	1.93
44849193--44849235	20	2.2	20	91	8	70	0	25	2	72	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44858109--44858200	48	1.9	48	93	0	157	41	19	17	21	1.90
44858425--44858478	17	2.9	19	71	20	60	46	14	12	25	1.81
44858408--44858478	36	2.0	36	94	0	124	46	14	12	26	1.80
44858407--44858470	17	3.6	17	72	15	58	46	12	12	28	1.78
44863367--44863430	17	3.6	17	74	15	67	46	14	12	26	1.79
44863385--44863438	17	2.9	19	71	20	60	46	16	12	24	1.82
44863368--44863438	36	2.0	36	97	0	133	46	15	12	25	1.81
44875617--44875684	35	1.9	35	96	0	127	44	16	23	16	1.86
44887554--44887578	13	1.9	13	100	0	50	60	0	0	40	0.97
44891394--44891511	37	3.2	37	85	2	166	22	13	25	38	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141