genome.fa.s1.2.7.7.80.10.50.1000.58.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  58  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18942505--18942579	19	3.8	19	87	6	114	37	16	8	38	1.78
18942516--18942578	21	3.1	21	88	9	103	38	14	7	39	1.75
18942620--18942689	34	2.1	34	100	0	140	34	17	24	24	1.96
18946731--18946756	12	2.2	12	100	0	52	76	0	0	23	0.78
18948931--18948989	30	2.0	30	86	0	82	32	15	22	30	1.94
18957818--18958411	138	4.3	138	89	1	859	45	5	8	40	1.60
18961968--18962032	30	2.2	29	94	2	112	63	0	3	33	1.10
18962009--18962040	16	2.0	16	93	0	55	71	0	0	28	0.86
18961998--18962080	40	2.1	40	86	4	114	65	0	4	30	1.14
18961981--18962054	29	2.5	30	80	14	91	64	0	2	32	1.07
18962040--18962064	11	2.3	11	100	0	50	52	0	8	40	1.31
18961958--18962092	70	1.9	72	84	6	186	63	0	3	32	1.12
18962332--18962410	21	3.8	20	73	6	68	58	1	1	39	1.14
18962783--18962813	5	6.0	5	92	7	53	3	58	38	0	1.15
18962783--18962813	16	2.0	15	93	6	53	3	58	38	0	1.15
18965639--18965679	18	2.3	18	86	0	55	43	7	17	31	1.76
18966177--18966237	13	4.7	13	72	0	50	37	24	6	31	1.81
18967884--18967921	19	2.0	19	100	0	76	21	21	10	47	1.80
18969045--18969069	12	2.1	12	100	0	50	24	24	0	52	1.48
18983725--18983878	79	2.0	78	87	3	220	32	9	22	35	1.87
18988501--18988553	22	2.6	19	72	18	52	37	20	15	26	1.92
18992485--18992575	26	3.3	27	69	13	87	37	16	7	38	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18992483--18992599	55	2.1	56	98	1	227	37	15	6	40	1.74
18992788--18992831	23	1.9	23	90	9	72	13	11	4	70	1.31
18992854--18992887	18	1.9	18	88	5	52	32	5	2	58	1.37
18994441--18994863	208	2.0	208	91	0	684	28	19	22	29	1.98
18994455--18994973	208	2.5	208	84	2	553	30	19	21	28	1.97
18995263--18995294	14	2.3	14	94	0	55	25	0	25	50	1.50
18995236--18995319	39	2.2	39	91	0	132	25	1	22	51	1.56
19002244--19002295	21	2.5	21	87	0	77	36	17	44	1	1.60
19002205--19002381	87	2.0	87	86	0	246	39	16	31	12	1.86
19002205--19002407	87	2.3	87	82	1	210	39	17	30	12	1.86
19002689--19002847	86	1.8	87	86	6	234	30	19	26	23	1.98
19002684--19002856	43	4.0	43	83	2	204	29	20	25	24	1.99
19002689--19002870	86	2.1	87	82	6	226	28	20	26	24	1.99
19003490--19003522	14	2.2	15	89	10	50	54	0	0	45	0.99
19004489--19004514	12	2.2	12	100	0	52	7	15	30	46	1.74
19004584--19004995	41	10.1	41	82	4	456	19	20	28	30	1.97
19005228--19005270	22	2.0	22	85	0	59	18	0	34	46	1.50
19005873--19005900	14	2.0	14	100	0	56	50	0	0	50	1.00
19006045--19006275	84	2.8	83	81	3	293	43	14	12	29	1.82
19008733--19008776	21	2.1	21	100	0	88	22	9	9	59	1.56
19010722--19010971	43	5.8	43	87	2	315	26	19	29	25	1.99
19010729--19010971	85	2.8	86	89	0	344	25	20	29	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19011559--19011691	57	2.3	57	88	2	187	28	10	14	46	1.77
19014099--19014337	50	4.8	50	78	6	198	30	20	25	23	1.99
19014207--19014327	49	2.4	49	81	4	143	33	19	23	23	1.97
19016739--19016771	15	2.2	15	94	0	57	42	18	6	33	1.75
19018321--19018397	14	5.0	15	71	20	52	42	14	9	33	1.77
19018337--19018376	20	2.0	20	90	0	62	50	12	10	27	1.72
19018325--19018391	34	1.9	35	90	3	109	46	13	8	31	1.74
19020193--19020236	22	2.0	22	100	0	88	31	4	13	50	1.62
19021285--19021322	13	2.9	13	85	14	60	39	21	7	31	1.82
19024589--19024717	56	2.3	56	78	9	136	51	4	0	42	1.28
19026292--19026322	9	3.4	9	90	0	53	38	22	12	25	1.90
19027371--19027414	20	2.2	20	88	8	63	65	2	25	6	1.28
19027590--19027615	11	2.4	11	100	0	52	15	0	0	84	0.62
19028407--19028444	15	2.5	15	83	8	51	39	2	0	57	1.12
19034999--19035423	43	9.9	43	90	0	663	31	20	23	23	1.98
19035558--19035712	44	3.5	44	81	3	134	25	21	25	27	1.99
19035727--19035793	32	2.1	32	83	10	84	17	23	34	23	1.96
19035774--19035885	45	2.5	45	82	4	129	26	18	26	27	1.98
19035774--19035925	44	3.4	44	75	11	123	28	18	25	28	1.98
19036564--19036608	20	2.2	21	88	4	65	66	2	24	6	1.27
19041367--19041404	2	19.5	2	94	5	69	50	0	50	0	1.00
19042851--19042901	24	2.1	24	86	13	70	58	0	3	37	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19044150--19044205	20	2.7	21	83	10	62	37	3	5	53	1.41
19045857--19045920	21	3.0	21	88	4	94	40	20	4	34	1.73
19066320--19066482	57	2.9	56	82	3	191	32	17	25	24	1.97
19075839--19075868	16	1.9	15	93	6	51	36	0	3	60	1.14
19076941--19076979	21	1.9	21	84	5	53	15	7	7	69	1.35
19079018--19079053	18	2.0	18	100	0	72	27	11	16	44	1.82
19083376--19084092	45	16.0	45	88	1	1017	29	16	23	31	1.96
19084191--19084661	132	3.6	132	88	0	656	30	19	24	25	1.98
19084701--19084862	50	3.2	51	72	13	140	34	18	19	27	1.95
19084835--19084991	44	3.5	45	72	14	137	28	16	29	25	1.97
19085214--19085243	15	2.0	15	93	0	51	70	13	0	16	1.18
19089210--19089268	18	3.2	18	69	21	50	45	23	8	22	1.79
19097876--19097928	17	3.2	17	81	10	65	45	0	5	49	1.26
19105842--19105894	17	3.2	17	78	10	65	43	1	5	49	1.37
19106700--19106745	22	2.1	22	92	4	76	6	4	4	84	0.85
19106699--19106746	21	2.3	21	85	7	71	8	6	4	81	0.98
19107795--19107828	18	1.9	18	88	5	52	11	26	44	17	1.83
19110648--19111040	3	131.0	3	100	0	786	33	0	33	33	1.58
19111039--19111071	3	11.0	3	93	0	57	66	3	0	30	1.06
19112443--19112563	50	2.4	50	86	2	172	27	23	28	20	1.99
19116006--19116063	22	2.6	23	89	8	75	29	5	18	46	1.71
19116015--19116063	22	2.2	23	96	3	91	32	4	18	44	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19117206--19117310	48	2.2	48	100	0	210	23	13	10	52	1.71
19117921--19117973	17	3.2	17	76	10	56	45	1	5	47	1.37
19121338--19121408	36	2.0	35	83	8	90	26	22	21	29	1.99
19121502--19121545	21	2.1	21	86	0	61	20	34	6	38	1.79
19121431--19122140	123	5.5	123	73	12	582	28	24	17	29	1.97
19121257--19122140	261	3.4	261	88	1	1254	28	25	16	30	1.97
19121523--19121991	138	3.5	137	73	11	459	28	25	16	29	1.97
19121635--19121785	51	3.0	51	76	0	167	29	26	17	27	1.97
19121763--19121806	21	2.1	21	86	0	61	20	34	6	38	1.79
19122501--19122558	24	2.4	24	97	0	107	31	25	10	32	1.89
19140671--19141406	368	2.0	368	98	0	1418	32	13	21	31	1.93
19142750--19142824	3	25.0	3	94	0	114	61	0	4	34	1.15
19144657--19144756	51	2.0	51	91	0	164	31	25	13	31	1.93
19144790--19145530	123	5.8	124	72	13	541	28	24	15	30	1.96
19144657--19145530	261	3.3	261	86	1	1153	29	24	15	30	1.96
19145025--19145175	51	3.0	51	79	1	160	29	24	15	30	1.96
19145709--19145757	24	2.0	24	92	0	80	32	22	10	34	1.88
19160181--19160233	17	3.2	17	76	10	56	45	1	5	47	1.37
19162439--19162465	3	9.0	3	100	0	54	66	0	0	33	0.92
19163294--19163337	19	2.3	19	88	0	61	9	20	13	56	1.64
19163855--19163952	50	2.0	50	85	0	133	27	22	15	34	1.94
19163986--19164708	123	5.6	123	72	11	554	28	24	16	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19163844--19164723	261	3.4	261	85	1	1183	28	23	16	31	1.96
19164376--19164474	51	1.9	51	89	0	153	27	19	17	36	1.94
19164491--19164631	51	2.8	51	78	0	147	27	24	17	30	1.97
19164610--19164653	21	2.1	21	91	0	70	20	31	6	40	1.79
19164563--19164704	72	2.0	72	81	0	167	27	27	14	30	1.95
19165087--19165196	24	4.6	24	94	1	186	30	24	10	34	1.88
19166149--19166239	47	2.0	46	82	10	114	12	18	19	49	1.79
19178894--19178946	17	3.2	17	81	10	65	45	0	5	49	1.26
19181347--19181444	43	2.2	44	89	1	153	26	16	26	30	1.97
19188982--19189079	40	2.5	40	93	0	160	27	17	21	33	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141