genome.fa.s1.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  98  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31819663--31819713	25	2.0	25	88	0	75	27	19	19	33	1.96
31819677--31819760	25	3.4	25	75	9	75	28	17	21	32	1.96
31823107--31823167	24	2.6	24	87	7	81	47	9	24	18	1.78
31829108--31829210	51	2.1	49	87	3	143	29	8	12	49	1.70
31836004--31836105	50	2.1	49	86	1	141	32	8	9	49	1.67
31838131--31838199	28	2.4	28	80	2	75	26	30	18	24	1.98
31838320--31838367	18	2.8	17	71	6	51	27	27	16	29	1.97
31840961--31840990	12	2.5	12	94	0	51	6	30	40	23	1.80
31859065--31859268	48	4.2	48	86	0	246	27	20	28	24	1.99
31863562--31863660	37	2.7	36	85	3	153	38	15	20	26	1.92
31868601--31868688	45	2.0	45	93	0	149	34	22	17	26	1.96
31868699--31868885	51	3.7	49	79	11	218	31	26	16	25	1.96
31868698--31868881	101	1.8	101	92	3	316	32	26	16	25	1.96
31878726--31878760	17	2.1	17	94	0	61	65	0	0	34	0.93
31892887--31893073	50	3.6	50	79	4	167	27	20	28	23	1.99
31893324--31893362	12	3.2	12	85	0	51	56	5	20	17	1.60
31899800--31899866	33	2.0	33	97	0	125	43	14	16	25	1.86
31900880--31900918	20	2.0	20	89	0	60	58	5	17	17	1.56
31902196--31902295	29	3.5	29	74	8	96	28	16	27	29	1.97
31902329--31902413	29	2.9	30	77	5	84	30	21	25	22	1.98
31904769--31904881	33	3.4	33	87	0	154	15	15	47	21	1.82
31907275--31907340	27	2.4	27	80	5	71	22	27	15	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31907482--31907641	29	5.7	28	88	3	214	31	26	11	31	1.91
31907482--31907643	56	2.9	57	86	3	220	30	26	11	31	1.91
31919896--31919936	18	2.3	18	86	0	55	41	24	14	19	1.89
31920112--31920151	18	2.2	18	86	0	53	37	47	2	12	1.55
31920125--31920149	13	1.9	13	100	0	50	40	48	0	12	1.40
31920284--31920334	9	5.7	9	83	6	59	27	7	19	45	1.78
31920284--31920335	18	2.9	18	82	0	68	26	7	19	46	1.77
31934421--31934457	11	3.5	11	78	14	51	18	21	40	18	1.91
31934411--31934460	20	2.5	20	96	3	91	18	22	40	20	1.92
31934532--31934704	27	6.4	27	82	2	204	36	17	20	25	1.94
31934531--31934699	81	2.1	81	86	2	241	36	17	20	26	1.94
31934532--31934724	54	3.6	52	82	7	219	35	17	21	24	1.95
31934749--31934829	24	3.4	24	81	5	85	18	7	25	48	1.74
31935004--31935139	32	4.3	31	80	4	148	22	19	19	38	1.93
31935004--31935124	64	1.9	64	87	0	179	23	19	19	38	1.94
31937896--31937932	18	2.0	19	89	5	58	24	0	29	45	1.53
31938173--31938223	22	2.3	22	83	6	59	21	3	23	50	1.65
31943572--31943609	20	1.9	20	88	0	58	36	10	2	50	1.51
31948514--31948560	23	2.0	23	100	0	94	25	27	12	34	1.92
31951052--31951077	13	2.0	13	100	0	52	61	30	0	7	1.24
31961133--31961157	13	1.9	13	100	0	50	48	20	0	32	1.50
31963717--31963763	24	2.0	24	100	0	94	44	0	29	25	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31974160--31974498	30	11.2	30	75	7	276	25	27	12	35	1.92
31974156--31974498	90	3.8	89	77	9	320	25	27	12	34	1.92
31979476--31979659	51	3.7	49	81	5	199	25	18	25	30	1.98
31985212--31985579	30	12.3	31	77	7	248	24	26	12	36	1.91
31985268--31985344	29	2.6	30	87	2	120	19	29	10	40	1.85
31985240--31985545	89	3.4	89	79	6	366	24	26	12	36	1.91
31985198--31985430	119	2.0	119	82	1	288	24	26	13	36	1.92
31985212--31985579	179	2.1	179	86	1	522	24	26	12	36	1.91
31986349--31986396	21	2.3	23	76	23	61	20	8	4	66	1.35
31992889--31992917	15	1.9	15	100	0	58	34	24	6	34	1.82
31997763--31997827	34	1.9	34	100	0	130	30	15	15	38	1.88
32001790--32002015	113	2.0	113	96	0	416	27	13	16	42	1.86
32009575--32009610	7	5.3	7	96	3	65	16	13	27	41	1.87
32015643--32016106	234	2.0	235	87	3	675	30	22	20	26	1.98
32015869--32025070	301	30.6	302	80	4	9561	32	20	18	28	1.96
32017561--32017601	19	2.2	19	95	0	73	21	24	19	34	1.97
32017590--32025070	302	24.9	302	80	4	7560	32	20	18	28	1.96
32015869--32039715	906	26.4	905	80	6	22785	32	21	18	27	1.96
32025452--32025476	13	1.9	13	100	0	50	32	24	36	8	1.84
32025462--32026499	302	3.4	302	82	6	1326	32	22	18	26	1.97
32026952--32027278	168	1.9	168	84	4	437	25	25	19	29	1.98
32027273--32033556	302	20.8	303	84	3	7722	32	21	18	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32033562--32039715	302	20.4	302	87	1	8385	33	21	18	26	1.97
32039504--32039924	210	2.0	209	91	2	684	36	21	16	25	1.94
32039206--32040225	511	2.0	512	92	1	1690	34	21	18	26	1.96
32039714--32042308	301	8.6	302	86	3	3406	32	21	18	27	1.96
32038904--32040528	814	2.0	813	89	2	2483	33	21	18	26	1.96
32039714--32042308	605	4.3	604	85	3	3415	32	21	18	27	1.96
32042314--32043360	301	3.5	288	81	7	1092	31	21	19	26	1.97
32042785--32043456	301	2.2	301	86	1	918	35	20	18	25	1.95
32041753--32045647	601	6.7	562	75	10	2698	32	21	18	27	1.97
32043461--32045647	302	7.3	302	84	2	2714	32	21	18	27	1.97
32045869--32050106	302	14.1	301	81	2	4359	32	20	17	25	1.95
32049972--32050253	147	1.9	147	87	2	415	23	24	20	32	1.98
32050108--32050801	301	2.3	301	86	2	995	30	21	19	27	1.98
32050549--32051062	261	2.0	259	87	3	755	34	20	19	26	1.96
32050808--32051607	302	2.6	302	86	2	1088	34	21	18	26	1.96
32051535--32051701	86	1.9	86	90	2	264	25	30	22	21	1.99
32051231--32051995	390	2.0	390	88	2	1142	31	23	19	25	1.98
32051858--32052186	169	1.9	171	91	1	545	33	20	23	23	1.97
32052027--32053691	303	5.5	301	87	2	2356	32	22	19	25	1.98
32053693--32054546	301	2.8	302	87	1	1192	33	21	18	26	1.96
32053808--32055310	776	1.9	774	87	0	2164	32	22	19	25	1.97
32054578--32058030	608	5.7	604	87	3	4876	31	22	19	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32054578--32058030	303	11.5	303	89	2	4868	31	22	19	25	1.98
32057865--32058204	185	1.9	182	88	1	518	36	22	20	21	1.95
32058034--32061426	302	11.2	300	90	1	4803	32	21	19	25	1.97
32058031--32061426	905	3.7	905	88	1	5006	32	21	19	26	1.97
32063091--32063874	302	2.6	297	88	3	1126	32	22	18	26	1.97
32063917--32069059	304	17.0	303	89	1	7167	31	22	19	26	1.98
32063917--32069059	601	8.5	607	88	1	7175	31	22	19	26	1.98
32063917--32069059	604	8.5	604	88	2	6981	31	22	19	26	1.98
32092229--32092859	303	2.1	303	83	3	799	30	22	20	26	1.98
32095238--32102021	301	22.5	303	86	3	8769	31	22	19	26	1.98
32095238--32102021	603	11.2	605	85	4	8854	31	22	19	26	1.98
32099030--32099081	25	2.1	25	100	0	104	30	17	21	30	1.96
32139617--32140575	302	3.2	302	94	0	1591	31	22	18	26	1.97
32140677--32142491	247	7.4	247	90	1	2596	37	14	11	36	1.83
32142200--32142233	14	2.3	15	90	5	52	41	17	5	35	1.74
32148263--32148299	17	2.1	18	90	5	58	27	0	16	56	1.40
32148413--32148495	41	2.0	41	97	0	157	48	13	12	26	1.77
32154009--32154046	17	2.2	17	90	0	58	55	13	2	28	1.51
32154392--32154486	48	2.0	48	91	0	154	41	21	18	18	1.91
32154708--32154761	17	2.9	19	76	20	69	46	18	11	24	1.81
32154691--32154761	36	2.0	36	94	0	124	46	16	11	25	1.80
32154690--32154754	17	3.7	17	76	15	69	46	16	10	26	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32155007--32155053	24	2.0	24	86	0	67	17	27	8	46	1.76
32155824--32155874	22	2.3	22	86	6	68	33	33	0	33	1.58
32160526--32160578	17	3.0	17	71	10	52	60	0	0	39	0.97
32160626--32160673	21	2.2	22	92	3	80	39	0	31	29	1.57
32170212--32170343	17	7.8	17	69	16	62	15	20	32	31	1.93
32170371--32170441	22	3.8	18	81	15	81	15	21	30	32	1.94
32170376--32170419	22	2.0	22	100	0	88	13	22	31	31	1.93
32172711--32172840	43	3.2	42	72	24	136	16	22	32	29	1.95
32172764--32172822	17	3.5	17	86	4	84	11	22	33	32	1.90
32173368--32173422	27	2.0	27	82	6	67	49	0	3	47	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141