genome.fa.s1.2.7.7.80.10.50.1000.134.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  134  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43287073--43287238	86	1.9	86	88	2	253	36	10	17	35	1.84
43287158--43287831	143	4.7	142	88	1	848	36	10	14	38	1.80
43286533--43287807	639	2.0	645	82	5	1552	37	9	14	38	1.79
43287158--43287848	284	2.4	285	85	1	873	36	9	14	38	1.80
43292808--43294799	143	14.1	141	77	6	1699	36	9	15	38	1.80
43296906--43300094	142	22.4	141	78	5	2820	36	9	14	39	1.79
43296906--43300093	286	11.2	281	76	6	2463	36	9	14	38	1.79
43296906--43300094	428	7.5	425	80	5	3053	36	9	14	39	1.79
43300404--43300445	22	1.9	22	90	0	66	42	16	19	21	1.89
43308099--43308202	22	4.9	21	72	17	81	72	0	5	22	1.06
43308155--43308216	17	3.8	17	78	22	53	74	0	6	19	1.03
43308145--43308212	15	4.5	14	75	24	50	75	0	4	20	0.98
43308150--43308216	32	2.1	32	88	5	100	74	0	5	19	1.02
43308540--43308690	64	2.4	64	84	3	189	15	35	21	27	1.94
43308511--43308709	64	3.1	62	77	7	186	12	32	24	31	1.91
43323228--43323267	4	10.0	4	100	0	80	50	0	0	50	1.00
43327172--43327210	19	2.1	19	95	0	69	28	10	41	20	1.85
43336115--43339039	142	20.5	140	78	6	2569	36	9	15	38	1.79
43336117--43347598	426	26.7	425	73	10	5548	35	9	15	38	1.80
43340285--43347600	143	51.7	138	74	10	4514	36	8	15	39	1.79
43340285--43347600	285	25.9	281	75	9	4649	36	8	15	39	1.79
43349372--43349401	15	2.0	15	100	0	60	0	60	6	33	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43354096--43354142	23	2.0	25	84	16	64	61	2	2	34	1.20
43364135--43364383	50	4.9	50	78	9	238	27	20	28	22	1.99
43364631--43364669	12	3.2	12	85	0	51	51	5	23	20	1.67
43367792--43367819	9	3.1	9	100	0	56	53	0	25	21	1.46
43381323--43381734	23	17.2	24	73	9	139	40	18	15	26	1.90
43381492--43381708	71	3.1	70	90	2	339	40	18	18	21	1.91
43381467--43381733	117	2.3	116	87	5	385	39	19	17	23	1.92
43381492--43381734	46	5.2	46	83	4	272	39	19	18	22	1.92
43382576--43382660	42	2.0	42	93	0	143	27	23	8	41	1.83
43383528--43383565	20	1.9	20	88	0	58	36	10	0	52	1.36
43385788--43385849	31	2.0	31	100	0	124	25	29	9	35	1.88
43391968--43392125	48	3.3	48	87	4	212	34	31	13	20	1.91
43394285--43394334	21	2.5	20	80	6	57	28	4	22	46	1.70
43397252--43397382	27	4.9	27	76	1	111	23	29	12	33	1.92
43397280--43397400	54	2.2	53	84	5	145	23	29	14	32	1.94
43434090--43434145	20	2.7	21	83	10	62	64	8	5	21	1.42
43434878--43435175	50	5.8	51	79	6	268	26	20	28	24	1.99
43434878--43435123	100	2.4	105	83	5	315	26	19	30	23	1.98
43441146--43441187	20	2.0	22	90	9	70	45	14	0	40	1.45
43443399--43443436	15	2.5	15	95	0	67	36	5	23	34	1.78
43444074--43444103	15	2.0	15	93	0	51	46	3	6	43	1.46
43446154--43446205	25	2.1	25	88	0	77	17	23	15	44	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43447715--43447767	16	3.3	16	91	0	79	26	30	3	39	1.74
43455653--43455715	17	3.9	17	76	17	62	49	0	0	50	1.00
43459421--43459450	15	2.0	15	93	0	51	63	3	6	26	1.35
43461223--43461273	24	2.1	24	82	7	59	52	0	39	7	1.30
43473004--43473075	26	2.8	26	84	0	99	25	23	20	30	1.99
43476840--43476869	16	1.9	16	93	6	53	50	20	0	30	1.49
43509623--43509652	14	2.1	14	93	0	51	16	43	0	40	1.48
43513270--43513385	59	2.0	59	100	0	232	38	12	22	26	1.89
43517359--43517413	24	2.3	24	70	0	56	18	5	10	65	1.42
43528282--43528609	144	2.3	144	97	0	620	41	16	21	21	1.90
43529593--43529617	8	3.1	8	100	0	50	24	12	40	24	1.88
43532251--43532316	25	2.6	25	90	4	89	25	27	21	25	1.99
43538322--43538475	76	2.0	77	98	1	301	39	16	18	25	1.91
43545526--43545564	16	2.5	15	83	8	51	43	0	2	53	1.14
43546311--43546347	18	2.2	18	85	9	51	37	16	8	37	1.78
43546984--43547054	36	2.0	36	88	0	106	23	22	16	36	1.94
43548907--43548960	25	2.1	26	83	10	67	27	3	3	64	1.27
43551277--43551455	27	6.6	27	87	2	234	41	20	17	20	1.90
43551261--43551455	82	2.4	82	85	2	241	43	20	16	19	1.88
43568703--43568741	17	2.3	17	86	8	53	76	2	10	10	1.10
43569969--43570098	49	2.7	49	81	2	154	30	18	29	22	1.97
43573388--43573443	24	2.3	24	96	0	103	32	17	17	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43573580--43573651	20	3.7	19	85	9	92	55	6	0	37	1.27
43573664--43573718	20	2.8	19	78	8	65	70	3	1	23	1.12
43573664--43573743	39	2.0	39	83	11	101	63	3	2	30	1.25
43573921--43573981	5	12.2	5	92	0	77	21	31	19	27	1.97
43573921--43574007	15	5.7	15	75	15	81	21	29	17	31	1.96
43574510--43574595	30	2.9	30	91	0	136	50	11	18	19	1.77
43575519--43575543	13	1.9	13	100	0	50	24	8	20	48	1.76
43590916--43590983	15	4.5	15	85	3	82	35	16	8	39	1.79
43590916--43590983	30	2.2	31	89	2	102	35	16	8	39	1.79
43595367--43595430	26	2.5	26	84	0	83	21	26	23	28	1.99
43601388--43601458	38	1.9	36	88	5	106	50	9	1	38	1.44
43612865--43612914	25	2.0	25	88	0	73	24	26	12	38	1.90
43616922--43616950	12	2.3	13	94	5	51	65	6	6	20	1.40
43619132--43619160	14	2.1	14	100	0	58	41	24	6	27	1.80
43624798--43624835	3	12.7	3	100	0	76	31	0	0	68	0.90
43625076--43625121	21	2.2	21	88	0	65	10	10	10	67	1.43
43625851--43625888	15	2.5	15	91	0	58	18	0	0	81	0.69
43633527--43633678	38	4.0	37	81	5	169	29	19	23	27	1.98
43633515--43633709	76	2.6	75	83	4	234	29	20	23	26	1.98
43633836--43634527	346	2.0	346	100	0	1384	30	15	16	36	1.90
43634554--43634606	21	2.5	20	82	14	63	50	1	0	47	1.12
43640832--43640994	68	2.4	68	83	4	186	39	19	19	21	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43640886--43641036	68	2.2	68	81	4	171	41	20	19	19	1.91
43659540--43659588	24	2.0	24	100	0	98	57	14	4	24	1.55
43661645--43661725	39	2.1	39	100	0	162	41	11	9	37	1.74
43662009--43662061	16	3.4	15	79	7	52	52	1	0	45	1.11
43661916--43662359	155	2.9	155	98	0	843	43	3	5	47	1.41
43662164--43662216	16	3.4	15	79	7	52	52	1	0	45	1.11
43669283--43669451	80	2.1	81	95	3	306	54	4	7	33	1.49
43672859--43673103	122	2.0	122	95	0	445	38	19	10	31	1.86
43675934--43675963	15	2.0	15	100	0	60	33	6	26	33	1.83
43676751--43676785	18	1.9	18	88	0	52	20	28	8	42	1.81
43677049--43677092	21	2.1	21	87	8	63	36	34	22	6	1.81
43677322--43677383	22	2.8	22	92	4	99	48	27	0	24	1.51
43681022--43681069	22	2.1	23	85	11	64	29	0	2	68	1.01
43681542--43681582	21	2.0	21	86	9	59	21	0	9	68	1.18
43681555--43682107	114	5.1	108	82	8	624	24	1	14	59	1.42
43681553--43682102	208	2.5	219	83	9	709	24	1	14	59	1.42
43683301--43683341	20	2.1	19	86	9	55	21	0	7	70	1.11
43687475--43687720	108	2.3	105	84	6	293	57	15	1	25	1.47
43687664--43687711	25	1.9	25	83	8	62	60	10	2	27	1.41
43687796--43687822	14	1.9	14	100	0	54	92	7	0	0	0.38
43695687--43695729	17	2.4	18	84	11	61	16	20	41	20	1.90
43696080--43696492	27	15.4	27	78	2	339	38	19	19	23	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43696080--43696492	54	7.7	54	80	4	386	38	19	19	23	1.93
43696472--43696548	26	3.0	25	79	5	75	23	16	23	36	1.94
43696511--43696607	24	4.0	24	90	0	149	23	6	20	49	1.71
43696511--43696619	24	4.5	24	88	0	137	23	6	21	48	1.73
43696688--43696745	27	2.1	27	84	12	75	20	25	20	32	1.97
43696868--43696969	32	3.2	32	76	1	107	19	21	21	37	1.95
43705060--43705146	42	2.1	42	91	4	140	20	28	22	27	1.99
43716238--43716362	60	2.1	60	94	2	218	31	11	0	57	1.34
43719093--43719235	27	5.3	27	86	1	189	38	20	18	22	1.93
43719093--43719235	53	2.7	53	84	5	189	38	20	18	22	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141