genome.fa.s1.2.7.7.80.10.50.1000.45.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  45  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14163011--14163140	66	2.0	67	96	1	244	30	13	14	41	1.85
14164047--14164092	23	1.9	24	86	8	67	50	0	19	30	1.48
14167428--14167516	44	2.0	44	97	0	169	26	15	11	46	1.80
14189972--14190099	45	2.9	45	89	2	188	24	17	25	32	1.96
14192045--14192189	50	2.9	50	85	4	193	28	22	28	20	1.98
14192440--14192478	20	2.0	20	90	10	62	56	5	23	15	1.59
14197497--14197535	20	2.0	20	90	10	62	15	23	5	56	1.59
14197825--14197972	50	2.8	50	79	6	143	21	31	19	27	1.97
14213479--14213645	83	2.0	84	98	1	327	23	20	1	54	1.52
14213514--14213644	42	3.1	42	64	22	112	25	20	1	51	1.56
14217781--14217823	16	2.5	18	81	11	54	13	16	11	58	1.64
14224808--14224871	17	3.6	17	78	15	67	23	3	0	73	0.97
14224963--14225011	22	2.2	22	85	10	64	34	36	10	18	1.85
14225027--14225090	22	2.8	23	81	11	69	25	48	9	17	1.76
14226809--14226843	15	2.4	15	90	4	54	48	0	8	42	1.33
14245312--14245345	17	2.0	17	88	0	50	20	2	5	70	1.21
14245367--14245421	23	2.4	23	81	0	65	18	7	16	58	1.60
14245461--14245564	49	2.1	49	82	7	122	33	12	8	45	1.73
14245893--14245933	6	6.8	6	91	0	55	12	12	4	70	1.31
14246162--14246230	27	2.6	27	100	0	138	34	15	5	43	1.71
14247531--14247584	22	2.5	22	90	0	81	25	18	25	29	1.98
14258009--14258405	137	2.9	137	94	1	661	20	20	25	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14260176--14260205	12	2.5	12	88	0	51	26	36	26	10	1.88
14260281--14260370	42	2.1	42	93	0	153	20	24	28	26	1.99
14260302--14260394	42	2.2	42	86	3	125	18	24	27	29	1.98
14271815--14271848	9	3.8	9	100	0	68	52	0	11	35	1.38
14277340--14277378	20	2.0	20	89	0	60	58	2	5	33	1.33
14277404--14277428	13	1.9	13	100	0	50	40	4	0	56	1.18
14292203--14292276	36	2.1	36	92	0	121	31	24	18	25	1.98
14293419--14293495	29	2.7	29	83	2	102	35	18	10	36	1.85
14294063--14294108	14	3.2	14	78	6	56	54	6	2	36	1.39
14294067--14294114	15	3.3	14	77	8	51	52	4	2	41	1.32
14301058--14301234	45	4.0	45	79	5	135	42	11	19	25	1.86
14301145--14301229	44	1.9	45	85	7	120	41	14	22	22	1.89
14301300--14301360	27	2.3	27	85	0	77	31	22	27	18	1.97
14303871--14303928	30	2.0	29	83	10	73	32	6	6	53	1.54
14304469--14304506	19	2.1	19	85	9	53	57	7	0	34	1.28
14306035--14306061	2	13.5	2	100	0	54	0	0	48	51	1.00
14312685--14312736	26	2.0	26	88	0	77	23	23	30	23	1.99
14316925--14316964	21	1.9	21	94	0	71	55	12	0	32	1.38
14316980--14317277	155	1.9	155	82	2	375	49	19	2	28	1.60
14319701--14319742	20	2.1	20	100	0	84	23	26	9	40	1.85
14324041--14324074	18	1.9	18	88	5	52	47	0	0	52	1.00
14324263--14324316	16	3.4	16	81	0	63	24	33	5	37	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14335733--14335849	33	3.5	32	78	9	117	41	0	14	43	1.51
14335726--14335859	67	2.0	65	81	8	153	42	0	12	44	1.48
14340784--14340957	30	5.8	29	82	8	204	44	15	6	32	1.73
14340784--14340957	60	2.9	60	88	1	249	44	15	6	32	1.73
14347298--14347371	29	2.5	29	82	4	85	45	14	12	27	1.80
14370731--14370791	3	20.3	3	89	0	95	34	1	1	62	1.15
14371629--14371827	109	1.8	107	89	4	310	27	16	20	36	1.93
14375872--14375905	6	5.7	6	89	0	50	67	14	5	11	1.39
14376322--14376356	13	2.6	13	90	4	52	68	0	20	11	1.20
14377586--14378265	87	7.8	87	92	0	1110	28	22	23	25	1.99
14377606--14378172	42	13.0	44	62	18	170	28	22	23	25	1.99
14380030--14380084	3	18.3	3	88	0	83	34	1	1	61	1.17
14380282--14380336	3	18.3	3	88	0	83	34	1	1	61	1.17
14379904--14380409	252	2.0	252	99	0	1003	26	11	8	52	1.67
14386734--14386832	28	3.6	27	84	11	112	28	28	12	31	1.92
14390007--14390048	21	2.0	21	86	9	59	42	0	7	50	1.30
14392061--14392098	18	2.1	18	90	0	58	34	10	21	34	1.87
14392147--14392183	9	4.1	9	89	0	56	45	10	10	32	1.74
14395379--14395451	25	2.8	26	85	4	94	1	21	1	75	0.96
14395370--14395451	25	3.2	25	84	3	92	2	20	1	75	0.98
14397171--14397234	9	6.8	10	73	18	57	59	1	0	39	1.07
14397170--14397230	18	3.2	19	82	13	65	62	1	0	36	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14397492--14397544	17	2.8	20	75	21	60	35	3	0	60	1.15
14399610--14399663	26	2.1	26	96	0	99	35	22	3	38	1.72
14401917--14401973	26	2.2	26	83	0	69	43	5	17	33	1.71
14412981--14413223	120	2.0	121	99	0	479	42	13	12	31	1.81
14415767--14415799	17	1.9	18	88	11	52	42	12	0	45	1.41
14418047--14418077	4	8.0	4	92	7	55	74	0	0	25	0.82
14418380--14418469	32	2.9	31	93	3	153	46	13	10	30	1.75
14418381--14418476	31	3.1	31	93	3	165	46	12	9	31	1.73
14427727--14427822	31	3.1	31	95	3	174	45	13	9	31	1.75
14428936--14429169	40	5.8	40	96	0	432	36	9	15	38	1.81
14429148--14429205	22	2.7	23	78	7	59	37	5	15	41	1.70
14433919--14433967	21	2.3	22	79	13	57	30	6	2	61	1.32
14433929--14433969	21	1.9	21	90	5	64	31	4	0	63	1.15
14433931--14433982	22	2.4	21	83	3	59	38	3	0	57	1.17
14457897--14457970	26	2.8	26	83	0	85	41	9	17	31	1.81
14476577--14476627	25	2.0	25	85	7	68	5	19	1	72	1.15
14476903--14476940	16	2.2	18	90	9	62	26	0	0	73	0.83
14479605--14479641	13	3.0	13	88	7	51	45	0	0	54	1.00
14486259--14486311	3	17.7	3	96	0	97	32	0	35	32	1.58
14493425--14493569	70	2.1	70	98	0	281	37	20	12	29	1.89
14498356--14498398	13	3.2	13	80	6	50	32	2	2	62	1.20
14499227--14499286	22	2.7	23	92	5	90	28	0	26	45	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14500196--14500236	21	2.0	21	85	0	55	31	4	4	58	1.40
14511052--14511096	20	2.2	20	88	7	65	26	11	15	46	1.79
14516879--14516913	11	3.2	11	92	8	54	0	25	0	74	0.82
14518721--14518763	20	2.1	21	86	4	61	60	9	0	30	1.28
14519371--14519424	19	2.8	20	78	18	60	24	0	5	70	1.08
14523491--14523532	22	1.9	22	90	9	68	42	11	14	30	1.81
14523551--14523626	19	3.7	21	84	8	70	38	17	7	36	1.79
14523554--14523598	22	2.0	22	86	4	63	35	17	6	40	1.76
14523577--14523630	19	2.8	19	94	0	99	37	16	9	37	1.81
14524143--14524648	44	11.6	45	71	11	241	26	22	20	29	1.99
14524272--14524665	217	1.8	217	92	1	664	27	23	19	29	1.98
14531908--14531977	12	6.0	12	73	11	65	54	1	5	38	1.33
14531879--14531947	2	34.5	2	79	0	57	49	0	7	43	1.30
14532027--14532078	3	18.0	3	82	7	54	61	1	0	36	1.07
14532027--14532086	22	2.8	22	84	2	68	60	1	3	35	1.23
14533504--14533610	42	2.6	41	79	4	117	28	27	20	23	1.99
14533632--14534032	50	8.0	50	71	1	257	25	23	21	29	1.99
14533632--14534032	100	4.0	100	85	0	516	25	23	21	29	1.99
14535581--14535618	13	2.8	13	96	4	67	13	15	0	71	1.16
14535572--14535619	7	7.0	7	78	21	57	14	16	0	68	1.21
14540845--14540914	12	6.0	12	73	11	65	54	1	5	38	1.33
14540816--14540884	2	34.5	2	79	0	57	49	0	7	43	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14540964--14541018	3	19.0	3	79	7	51	60	1	1	36	1.18
14541643--14541679	16	2.4	16	90	4	58	72	8	2	16	1.19
14542317--14542758	108	4.2	107	85	8	602	34	13	16	34	1.88
14542388--14542758	206	1.8	205	98	0	715	33	13	16	36	1.87
14543136--14543160	13	1.9	13	100	0	50	24	0	0	76	0.80
14543185--14543218	17	2.0	17	88	0	50	14	5	0	79	0.91
14543483--14543828	108	3.2	106	86	5	464	33	17	14	34	1.90
14543767--14543879	59	2.0	55	89	6	172	20	25	18	35	1.95
14546236--14546491	87	2.9	87	84	2	291	25	22	13	38	1.91
14546272--14546581	87	3.6	87	81	1	255	24	20	14	39	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141