genome.fa.s1.2.7.7.80.10.50.1000.52.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  52  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16792558--16792613	12	4.4	12	75	20	60	69	5	5	19	1.28
16796287--16796355	33	2.2	33	94	5	124	23	11	26	39	1.88
16800317--16800451	44	3.1	44	100	0	270	57	8	13	20	1.63
16806078--16806215	27	5.1	27	86	0	177	42	23	16	18	1.89
16808211--16808260	12	4.0	13	75	15	52	36	0	40	24	1.55
16808761--16808918	81	1.9	82	84	6	214	41	22	15	20	1.90
16808753--16808920	54	3.1	53	83	6	212	42	20	16	20	1.89
16808753--16808920	27	6.2	27	82	4	187	42	20	16	20	1.89
16816868--16816907	5	8.0	5	94	0	53	62	5	0	32	1.17
16818026--16818061	18	2.0	18	100	0	72	50	11	22	16	1.77
16819080--16819108	7	4.1	7	100	0	58	27	0	17	55	1.42
16819082--16819112	14	2.2	14	94	0	53	32	0	12	54	1.38
16819763--16819802	18	2.2	18	86	0	53	17	30	7	45	1.76
16820343--16820385	14	3.0	14	80	12	52	39	37	0	23	1.55
16820356--16820472	21	5.2	21	76	18	103	44	35	0	19	1.51
16820343--16820408	28	2.3	27	85	10	87	39	36	0	24	1.56
16820349--16820472	42	2.8	41	77	15	115	44	35	0	20	1.52
16820395--16820469	20	3.6	20	87	5	96	49	33	0	17	1.47
16820632--16820861	22	10.6	22	86	2	295	47	31	0	20	1.54
16820632--16820861	43	5.3	44	86	3	304	47	31	0	20	1.54
16820632--16820861	65	3.5	65	94	1	381	47	31	0	20	1.54
16821463--16821888	126	3.4	126	90	1	635	28	22	18	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16822533--16822557	13	1.9	13	100	0	50	68	0	0	32	0.90
16827908--16828105	98	2.0	98	92	0	324	18	14	17	50	1.79
16836030--16836109	32	2.3	35	82	14	96	23	0	6	70	1.10
16837453--16837504	27	2.0	27	85	11	72	40	0	11	48	1.40
16837682--16837737	18	3.4	18	65	34	54	28	8	8	53	1.62
16837682--16837742	30	2.0	30	100	0	122	29	11	9	49	1.71
16838550--16838667	35	3.4	35	71	4	112	21	27	24	26	1.99
16838509--16838743	70	3.3	70	89	4	341	25	25	22	26	2.00
16838585--16838694	35	3.1	35	70	10	116	24	26	23	25	2.00
16841320--16841365	15	3.2	15	71	22	53	50	17	8	23	1.74
16845136--16845182	24	2.0	24	100	0	94	46	25	8	19	1.77
16853941--16853996	23	2.4	23	84	3	76	25	3	10	60	1.45
16856246--16856283	20	1.9	20	88	0	58	23	15	31	28	1.96
16856829--16858003	587	2.0	587	100	0	2350	29	23	15	32	1.95
16868948--16868991	17	2.6	17	85	10	63	81	2	0	15	0.78
16868950--16868989	8	4.9	8	90	3	62	85	2	0	12	0.71
16870128--16870161	12	2.8	12	90	4	50	67	0	20	11	1.21
16870145--16870202	15	4.1	15	75	20	61	74	0	18	6	1.04
16870142--16870192	12	4.1	12	76	23	52	78	0	17	3	0.90
16872045--16872086	22	2.0	21	90	4	66	33	0	11	54	1.37
16875321--16875374	20	2.7	20	85	0	72	24	35	12	27	1.92
16879186--16879243	10	5.7	10	76	11	64	29	27	13	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16879186--16879246	20	3.0	20	83	9	79	27	26	13	32	1.93
16914969--16914995	13	2.1	13	100	0	54	14	29	33	22	1.94
16918783--16918812	1	30.0	1	100	0	60	0	0	0	100	0.00
16920608--16920667	31	2.0	30	83	9	77	16	15	13	55	1.70
16925205--16925258	19	2.6	20	82	11	56	57	3	1	37	1.27
16927389--16927527	57	2.4	57	83	3	163	41	15	25	17	1.89
16927695--16927753	29	2.0	29	86	0	82	33	13	32	20	1.91
16931977--16932007	9	3.4	9	90	0	53	32	9	0	58	1.31
16950160--16950259	45	2.2	45	82	3	121	42	16	17	25	1.88
16951607--16951667	24	2.5	23	80	15	61	49	4	0	45	1.23
16951615--16951694	35	2.3	35	85	8	103	50	5	0	45	1.23
16953476--16953564	27	3.3	26	79	6	97	17	29	16	35	1.93
16959952--16960159	105	2.0	105	95	1	373	35	20	11	33	1.88
16964091--16964426	163	2.1	162	98	1	656	42	16	8	32	1.79
16964559--16964606	21	2.3	21	77	0	51	37	6	2	54	1.38
16969732--16969811	25	3.2	25	82	7	92	32	20	23	23	1.98
16976466--16976503	17	2.2	18	90	4	60	39	0	5	55	1.23
16984377--16984432	30	1.9	29	85	7	78	32	14	21	32	1.93
16990126--16990164	4	9.8	4	83	10	53	23	2	0	74	0.94
16991688--16991741	17	3.2	17	68	5	56	37	24	11	27	1.89
16996413--16996451	17	2.4	17	91	4	62	56	0	12	30	1.37
16996501--16996904	201	2.0	201	97	0	763	31	25	13	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17003323--17003360	16	2.3	17	86	4	51	65	5	2	26	1.27
17005563--17005613	21	2.5	19	79	14	57	27	1	7	62	1.33
17005893--17005923	16	1.9	16	93	0	53	48	6	6	38	1.55
17006043--17006084	9	4.4	9	82	17	50	30	2	0	66	1.04
17006054--17006176	17	6.6	18	75	7	61	38	0	4	56	1.21
17006105--17006165	20	3.2	19	88	6	88	37	0	6	55	1.26
17006096--17006166	19	3.7	19	85	7	90	36	0	8	54	1.31
17006302--17006350	20	2.5	19	90	6	80	36	0	8	55	1.30
17006106--17006476	185	2.0	186	99	0	735	36	9	12	41	1.75
17012744--17012788	21	2.1	21	91	0	72	13	15	26	44	1.83
17012892--17013127	43	5.5	43	87	1	312	29	28	19	22	1.98
17014117--17014539	192	2.2	192	82	4	487	41	19	9	29	1.83
17016917--17016963	7	7.0	7	88	9	62	29	51	0	19	1.47
17016917--17016955	12	3.1	12	82	13	51	30	51	0	17	1.46
17016902--17016955	26	2.1	26	82	0	63	31	46	0	22	1.52
17016918--17016974	14	4.2	14	86	4	64	35	43	0	21	1.52
17016901--17016974	21	3.6	21	81	7	80	33	43	0	22	1.54
17020289--17020329	21	2.0	21	95	0	73	29	41	0	29	1.56
17020290--17020362	14	5.2	14	74	9	60	32	43	1	21	1.61
17020291--17020349	21	2.8	21	84	0	64	33	45	0	20	1.51
17020356--17020524	80	2.1	81	84	7	220	45	27	1	25	1.61
17020897--17021256	41	8.8	40	81	7	363	29	28	21	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17020979--17021256	123	2.3	122	87	6	402	28	29	21	20	1.98
17020897--17021256	82	4.4	82	90	3	466	29	28	21	21	1.98
17026883--17027016	67	2.0	67	91	0	214	32	9	23	33	1.88
17027289--17027336	19	2.5	19	86	6	62	50	0	25	25	1.50
17033749--17033811	31	2.1	31	90	3	101	15	26	28	28	1.96
17042571--17042619	21	2.3	21	92	0	80	26	32	4	36	1.75
17048949--17048995	18	2.7	18	86	3	60	14	31	27	25	1.95
17049777--17049811	6	5.8	6	93	0	61	17	65	0	17	1.27
17051251--17051308	6	10.0	6	73	12	50	50	0	0	50	1.00
17051257--17051341	35	2.4	34	86	7	109	48	0	2	49	1.14
17062011--17062089	18	4.2	18	75	12	70	64	2	1	31	1.15
17062011--17062065	19	2.9	19	81	2	67	67	1	1	29	1.11
17067253--17067302	24	2.0	26	81	14	61	36	6	0	58	1.23
17071473--17071560	18	4.8	17	69	22	54	61	3	3	31	1.29
17075720--17075785	23	2.8	23	81	11	80	56	1	1	40	1.18
17082185--17082291	15	7.3	15	68	6	58	21	20	27	30	1.98
17082176--17082318	29	5.0	28	74	7	92	20	20	27	30	1.98
17082259--17082331	14	5.4	13	73	9	65	17	20	32	28	1.96
17084692--17084728	18	2.1	18	90	10	58	16	18	37	27	1.92
17085529--17085624	43	2.2	43	86	0	129	28	16	23	31	1.96
17085711--17085805	38	2.5	38	79	3	102	34	17	15	31	1.92
17086112--17086213	38	2.7	38	87	3	143	36	17	13	32	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17101419--17101513	38	2.5	38	85	0	127	34	13	16	34	1.89
17108992--17109063	36	2.0	36	100	0	144	61	5	13	19	1.52
17109401--17109554	4	39.0	4	74	19	71	66	0	31	1	1.00
17109405--17109561	28	5.3	30	70	19	100	66	0	32	1	1.00
17109400--17109563	5	34.6	5	75	12	59	65	0	32	1	1.00
17109440--17109577	46	3.0	44	80	12	172	68	0	30	1	0.99
17109392--17109587	41	4.7	41	80	14	199	65	0	33	1	0.99
17110255--17110279	8	3.1	8	100	0	50	88	0	0	12	0.53
17115329--17115366	18	2.1	18	90	0	58	10	44	7	36	1.68
17116218--17116243	3	8.7	3	100	0	52	69	30	0	0	0.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141