genome.fa.s1.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  51  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16343828--16343852	4	6.2	4	100	0	50	24	76	0	0	0.80
16345024--16345096	34	2.1	34	82	5	85	23	0	15	61	1.33
16345120--16345195	20	3.7	20	79	13	73	13	0	30	56	1.37
16350365--16350412	15	3.2	15	93	0	87	27	0	20	52	1.47
16356709--16356932	90	2.5	89	79	5	238	33	8	19	39	1.81
16358579--16358645	33	2.0	33	97	0	125	40	19	17	22	1.92
16359949--16360015	28	2.4	27	78	11	64	49	10	10	29	1.70
16362734--16362800	28	2.4	27	78	11	64	49	10	10	29	1.70
16365860--16365893	13	2.8	12	86	8	50	14	2	2	79	0.97
16370787--16370952	46	3.7	46	74	4	133	42	11	22	23	1.86
16396585--16396633	4	12.2	4	100	0	98	51	24	0	24	1.49
16396631--16396663	4	8.2	4	100	0	66	75	24	0	0	0.80
16402574--16402626	18	2.9	19	80	8	74	43	11	35	9	1.73
16406863--16406902	19	2.1	19	86	9	55	40	0	30	30	1.57
16411900--16411924	13	1.9	13	100	0	50	32	0	8	60	1.26
16417752--16417988	115	2.0	116	95	3	424	44	7	9	38	1.65
16420917--16420960	15	2.8	15	86	6	52	65	2	2	29	1.16
16440771--16440829	30	1.9	31	82	3	75	45	5	20	28	1.72
16441351--16441383	14	2.5	14	90	9	52	24	9	27	39	1.85
16441301--16441446	51	2.8	52	78	9	165	25	14	28	31	1.95
16448876--16449058	50	3.7	49	81	7	190	26	16	26	30	1.97
16448876--16449058	101	1.8	101	83	4	244	26	16	26	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16465190--16465214	12	2.1	12	100	0	50	24	24	0	52	1.48
16469143--16469186	22	2.0	22	95	0	79	34	4	36	25	1.76
16470315--16470373	30	2.0	30	83	6	75	28	15	25	30	1.96
16477819--16477882	31	2.1	31	82	5	76	28	20	0	51	1.47
16489898--16489927	13	2.3	13	94	0	51	56	6	6	30	1.51
16490815--16490854	16	2.4	17	83	8	55	32	0	37	30	1.58
16491828--16492169	38	9.2	38	74	14	170	36	16	22	24	1.94
16491825--16492451	35	17.4	35	74	11	479	37	15	21	25	1.93
16491825--16492451	73	8.7	71	75	12	446	37	15	21	25	1.93
16491841--16492451	148	4.3	140	76	10	476	37	15	21	25	1.93
16492646--16492787	75	1.9	75	94	0	248	38	20	12	28	1.89
16502959--16503022	19	3.2	20	75	22	64	39	4	1	54	1.31
16515295--16515731	39	11.2	39	83	0	496	32	18	32	16	1.93
16517377--16517561	91	2.0	92	98	1	363	49	10	8	30	1.68
16518459--16518552	25	3.8	25	73	8	75	30	26	19	23	1.98
16522931--16522972	13	3.2	13	82	0	57	14	38	23	23	1.92
16536427--16536684	33	7.6	33	67	24	137	33	26	20	19	1.96
16536379--16536685	103	3.0	103	91	0	481	32	26	20	20	1.97
16536561--16536613	27	2.0	27	96	0	97	26	28	24	20	1.99
16538758--16538797	20	2.0	20	100	0	80	45	10	10	35	1.71
16538758--16538809	20	2.7	20	88	8	63	48	11	9	30	1.72
16538849--16538888	22	1.9	20	85	10	53	30	12	20	37	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16540030--16540110	43	2.0	40	85	7	108	46	2	24	25	1.65
16541819--16541869	19	2.7	19	87	0	75	25	3	33	37	1.74
16549140--16549200	24	2.7	22	75	9	61	29	0	6	63	1.19
16551038--16551102	22	3.0	21	78	13	69	56	3	3	36	1.30
16551427--16551456	15	2.1	15	93	6	53	56	0	0	43	0.99
16552234--16552310	13	5.9	13	89	0	109	29	5	25	38	1.78
16554822--16554863	2	21.0	2	95	0	75	0	47	0	52	1.00
16560695--16560749	3	18.3	3	100	0	110	67	0	0	32	0.91
16562933--16563357	31	13.8	31	77	8	395	33	5	16	44	1.70
16562927--16563433	92	5.5	92	85	0	631	32	5	17	44	1.72
16562932--16563433	184	2.7	184	87	1	702	32	5	17	44	1.71
16568054--16568137	27	3.1	26	80	10	71	34	7	28	29	1.84
16581331--16581524	30	6.5	31	77	8	145	24	24	12	38	1.91
16581331--16581547	59	3.7	58	78	7	206	24	24	12	37	1.91
16583394--16583437	22	2.0	22	82	8	54	29	0	27	43	1.55
16594123--16594284	37	4.4	37	77	9	179	20	13	25	40	1.89
16594762--16594947	37	5.1	37	78	8	200	19	12	26	40	1.88
16594762--16594947	74	2.5	73	80	6	232	19	12	26	40	1.88
16596348--16596391	18	2.5	18	77	3	54	25	0	6	68	1.14
16599762--16599824	33	1.9	33	90	0	99	20	17	25	36	1.94
16601746--16601800	28	2.0	28	96	0	101	20	10	29	40	1.86
16605387--16605444	10	5.6	11	76	12	61	60	1	1	36	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16605389--16605444	20	2.8	19	82	15	69	58	1	1	37	1.19
16610255--16610295	22	1.9	21	95	5	73	19	14	34	31	1.92
16618020--16618112	9	10.7	9	69	25	51	70	2	23	3	1.12
16618053--16618139	30	2.8	30	84	5	102	73	0	21	4	1.01
16618053--16618112	15	4.0	15	91	0	102	76	0	23	0	0.78
16618107--16618141	18	1.9	18	88	0	52	68	0	17	14	1.21
16618116--16618150	18	1.9	18	88	0	52	71	2	14	11	1.25
16622387--16622436	6	8.2	6	93	2	64	16	24	0	60	1.36
16622387--16622436	12	4.1	12	86	2	73	16	24	0	60	1.36
16622784--16622837	27	2.0	27	100	0	108	29	14	11	44	1.80
16627003--16627123	25	4.8	25	94	0	215	19	24	19	36	1.95
16627003--16627155	50	3.2	50	88	5	219	19	23	18	38	1.93
16627104--16627140	19	1.9	19	88	0	56	21	24	16	37	1.93
16627135--16627203	22	3.1	22	76	12	70	21	21	13	43	1.86
16628470--16628577	47	2.3	47	87	3	155	25	15	27	31	1.96
16635838--16635922	27	3.1	27	82	1	107	40	9	25	24	1.85
16638882--16639035	43	3.6	42	78	6	184	35	25	18	20	1.95
16638852--16639077	42	5.4	41	75	9	179	36	23	16	22	1.94
16638845--16639081	85	2.8	84	85	1	314	35	24	17	22	1.95
16639057--16639107	26	2.0	26	84	0	66	27	33	23	15	1.95
16645550--16645597	18	2.7	17	75	18	53	72	10	6	10	1.26
16664043--16664084	22	2.0	21	90	4	66	30	4	33	30	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16665176--16665217	10	4.3	10	78	6	50	28	11	23	35	1.91
16692943--16692975	10	3.4	10	87	8	50	69	0	0	30	0.88
16693061--16693086	10	2.6	10	100	0	52	69	7	0	23	1.14
16693318--16693451	43	3.0	44	84	6	180	47	13	8	31	1.72
16696533--16696615	41	2.0	41	93	4	141	40	18	7	33	1.78
16699392--16699510	59	2.0	59	98	0	229	17	17	23	41	1.90
16703746--16703796	6	8.5	6	86	0	57	58	3	23	13	1.52
16714200--16714244	21	2.2	20	84	4	54	28	8	17	44	1.79
16715515--16715571	29	2.0	29	89	0	87	29	38	17	14	1.89
16726753--16726933	92	2.0	93	86	1	256	42	7	14	35	1.74
16729456--16729490	14	2.6	13	86	8	52	71	0	0	28	0.86
16730386--16730508	32	3.7	33	71	17	110	54	1	3	40	1.26
16730416--16730512	12	8.4	12	70	19	57	55	1	3	40	1.22
16730418--16730466	20	2.6	19	84	12	66	55	2	2	40	1.23
16730376--16730510	68	2.0	69	91	1	218	53	2	2	40	1.31
16735963--16736180	109	2.0	108	92	0	364	38	6	15	40	1.73
16738864--16739077	29	7.4	28	77	9	162	39	12	26	22	1.89
16738864--16739077	58	3.7	59	80	11	235	39	12	26	22	1.89
16738863--16739050	87	2.1	88	83	7	240	39	11	26	22	1.88
16739913--16740067	78	2.0	78	93	2	267	34	11	14	38	1.83
16748318--16748499	50	3.6	50	81	4	195	27	21	29	21	1.99
16750871--16750985	39	3.0	38	87	3	158	29	8	12	49	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16750964--16750995	14	2.4	14	90	10	50	25	0	12	62	1.30
16753228--16753319	29	3.2	29	81	6	105	28	21	11	38	1.89
16765576--16765619	21	2.1	21	95	0	79	29	36	2	31	1.70
16772705--16772755	26	2.0	26	84	7	68	39	23	9	27	1.86
16774020--16774197	29	6.1	29	86	3	241	20	28	13	37	1.91
16784315--16784352	17	2.4	17	91	8	62	31	13	0	55	1.38
16791098--16791226	64	2.0	65	98	1	251	19	15	23	41	1.89
16791179--16791239	19	3.5	19	64	22	53	21	11	26	40	1.87
16791117--16791249	33	4.2	33	76	19	156	21	13	24	40	1.89
16791763--16791832	31	2.2	32	82	9	83	25	28	12	32	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141