genome.fa.s1.2.7.7.80.10.50.1000.90.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  90  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29166465--29166521	29	2.0	29	82	6	71	42	8	17	31	1.80
29167779--29167884	46	2.3	46	76	0	131	33	23	13	30	1.93
29169960--29170527	3	189.3	3	100	0	1136	33	0	0	66	0.92
29179174--29179243	30	2.3	31	80	9	81	41	17	14	27	1.87
29186760--29186957	104	1.9	105	98	1	389	40	14	2	42	1.56
29190146--29190466	176	1.8	177	80	6	391	29	22	22	25	1.99
29191086--29191117	7	4.6	7	92	0	55	15	0	53	31	1.43
29191078--29191117	21	1.9	21	94	0	71	20	0	50	30	1.49
29191303--29191368	7	9.3	7	88	3	69	27	0	34	37	1.57
29191306--29191368	21	2.9	22	84	13	78	26	0	33	39	1.57
29194065--29194170	9	12.0	9	81	7	128	45	19	0	33	1.57
29201036--29201101	21	3.2	20	86	4	87	34	18	45	1	1.59
29201525--29201606	43	1.9	43	87	5	121	32	19	20	26	1.97
29201578--29201762	42	4.3	43	88	4	241	27	23	21	28	1.99
29201534--29201762	85	2.7	85	79	6	239	27	23	21	27	1.99
29202828--29202876	17	2.9	16	74	14	53	42	0	12	44	1.41
29205012--29205646	104	6.1	104	84	1	752	30	17	15	36	1.91
29205035--29205629	312	1.9	313	85	1	836	30	17	15	36	1.91
29205835--29205941	52	2.1	52	100	0	214	39	21	13	26	1.90
29211841--29211884	19	2.5	18	85	10	56	43	4	0	52	1.22
29217040--29217079	20	2.0	20	90	0	62	50	12	10	27	1.72
29217028--29217094	34	1.9	35	90	3	109	46	13	8	31	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29217882--29217935	21	2.6	21	100	0	108	22	33	18	25	1.97
29220046--29220253	46	4.6	46	91	1	332	34	15	21	29	1.94
29222752--29222916	29	5.8	28	82	4	179	24	13	23	38	1.91
29222756--29222914	86	1.8	86	81	7	198	23	13	24	37	1.92
29230301--29230344	22	2.0	22	100	0	88	63	9	0	27	1.24
29230304--29230352	22	2.2	22	92	0	80	63	8	0	28	1.23
29241295--29241331	6	6.2	6	96	0	56	10	0	5	83	0.79
29241383--29241606	112	2.0	112	98	1	432	35	6	3	54	1.43
29242176--29242211	18	2.0	18	88	0	54	41	2	8	47	1.48
29243236--29243293	29	2.0	29	100	0	116	31	10	17	41	1.83
29251479--29251777	68	4.4	68	80	3	305	33	17	23	26	1.96
29262568--29262608	19	2.1	20	90	4	66	58	4	9	26	1.50
29264213--29265316	133	8.3	133	96	0	1514	26	25	19	27	1.99
29266345--29266374	8	3.9	8	95	4	53	13	13	0	73	1.10
29266336--29266371	15	2.5	14	90	4	54	13	13	0	72	1.13
29269833--29269896	32	2.0	32	96	0	119	35	21	20	21	1.96
29271100--29271133	5	6.8	5	87	12	52	79	0	2	17	0.86
29271302--29271342	19	2.1	20	90	4	66	58	4	9	26	1.50
29275249--29275290	20	2.0	21	86	9	59	26	19	28	26	1.98
29283307--29283359	26	2.0	26	100	0	106	18	26	22	32	1.97
29287643--29287708	33	2.0	33	93	0	114	36	24	10	28	1.89
29289406--29289534	70	1.9	66	84	6	168	43	11	12	32	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29291986--29292067	23	3.6	23	86	0	110	41	25	17	15	1.89
29291986--29292087	46	2.2	46	82	0	123	41	24	17	16	1.90
29292105--29292180	23	3.3	23	72	7	73	40	19	15	23	1.90
29292104--29292349	92	2.7	92	82	5	264	41	21	14	22	1.89
29292128--29292294	23	7.3	23	70	2	111	41	22	16	19	1.89
29292238--29292346	23	4.7	23	76	8	69	42	22	14	21	1.89
29292079--29292346	46	5.8	47	84	1	233	40	22	14	22	1.90
29293650--29293833	87	2.1	87	85	4	246	36	15	25	22	1.93
29293650--29293853	29	7.0	29	77	5	162	37	14	25	22	1.92
29293710--29293853	58	2.5	58	85	3	182	38	14	25	22	1.92
29299745--29299783	18	2.1	18	85	4	51	12	33	12	41	1.82
29305298--29305364	34	1.9	35	87	3	100	31	8	14	44	1.76
29308629--29308680	24	2.2	24	93	3	88	53	23	7	15	1.67
29310634--29310680	18	2.6	18	89	3	67	53	0	46	0	1.00
29313780--29313843	31	2.0	33	93	6	114	39	23	12	25	1.90
29315034--29315119	33	2.6	33	79	0	91	30	10	43	16	1.81
29316920--29316949	12	2.5	12	94	0	51	76	13	3	6	1.11
29317181--29318001	110	7.6	111	87	5	995	57	14	0	26	1.42
29317181--29318001	222	3.8	218	86	7	1017	57	14	0	26	1.42
29317519--29318001	108	4.6	104	85	6	593	57	14	0	26	1.43
29318416--29318465	24	2.1	24	85	14	68	62	2	2	34	1.18
29320428--29320452	5	5.0	5	100	0	50	60	40	0	0	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29327415--29327469	11	5.1	11	73	20	53	56	0	1	41	1.10
29346981--29347135	83	1.9	83	94	0	274	28	14	25	32	1.94
29350807--29350902	38	2.5	38	93	0	165	34	18	21	25	1.96
29350807--29350917	38	2.9	37	84	5	143	36	18	19	26	1.94
29357062--29357159	38	2.6	38	80	0	115	38	3	8	50	1.48
29361830--29361856	9	3.0	9	100	0	54	55	0	11	33	1.35
29375643--29375866	119	1.9	119	79	5	256	36	15	16	31	1.90
29377447--29377480	16	2.2	16	89	5	52	5	2	32	58	1.37
29377852--29377948	44	2.2	44	83	0	113	28	20	23	26	1.99
29377880--29378122	129	1.9	129	87	3	355	26	21	22	30	1.99
29377965--29378080	44	2.6	43	77	12	103	26	21	20	31	1.98
29378268--29378547	89	3.1	89	80	7	334	26	26	20	26	1.99
29378329--29378542	45	4.8	44	68	15	134	26	25	21	26	1.99
29386481--29386533	27	2.0	27	100	0	106	20	11	7	60	1.55
29386638--29386662	8	3.1	8	100	0	50	60	0	0	40	0.97
29386868--29386903	17	2.1	17	100	0	72	36	5	5	52	1.48
29389208--29389266	24	2.5	24	94	0	100	42	0	27	30	1.56
29389333--29389470	20	7.3	20	66	14	105	34	5	14	44	1.69
29389307--29389495	37	5.1	37	98	0	362	34	5	13	46	1.68
29395896--29395928	16	2.1	16	88	5	50	6	3	33	57	1.38
29397045--29397139	17	5.6	17	68	18	54	41	2	4	52	1.32
29397114--29397228	60	1.9	58	86	6	160	40	2	5	51	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29397116--29397248	58	2.3	59	82	10	148	41	2	6	49	1.41
29399292--29399330	18	2.2	17	86	4	51	46	5	5	43	1.48
29399292--29399336	17	2.6	18	85	3	56	42	4	6	46	1.50
29402406--29402437	10	3.1	10	91	8	55	9	18	12	59	1.59
29407668--29407753	43	2.0	43	90	0	136	22	24	2	51	1.60
29408876--29408915	19	2.1	19	86	9	55	2	25	0	72	0.97
29418360--29418394	16	2.2	16	90	10	54	40	5	5	48	1.51
29427289--29427555	27	9.9	27	78	1	241	28	25	21	23	1.99
29427291--29427555	81	3.3	81	81	1	273	29	25	21	24	1.99
29428112--29428191	38	2.1	38	85	0	106	36	30	12	21	1.90
29430096--29430127	3	10.7	3	100	0	64	34	0	0	65	0.93
29430759--29430957	99	2.0	99	97	0	371	38	19	3	39	1.67
29435306--29435337	2	16.0	2	93	0	55	50	3	0	46	1.17
29448289--29448469	27	6.6	27	80	5	166	37	14	24	24	1.92
29448471--29448551	27	3.1	26	73	18	69	30	20	19	28	1.97
29448913--29448944	16	2.0	16	100	0	64	43	6	12	37	1.68
29455142--29455453	137	2.3	137	89	1	457	45	16	17	20	1.86
29455144--29455452	91	3.4	90	90	2	449	44	16	17	21	1.86
29455144--29455453	46	6.8	45	87	2	433	45	16	17	20	1.86
29455145--29455500	45	7.8	45	85	4	218	43	16	18	21	1.88
29456051--29456110	31	1.9	31	100	0	120	33	15	13	38	1.86
29457600--29457721	61	2.0	61	100	0	244	31	18	13	37	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29460869--29460902	8	4.2	8	85	14	52	11	50	0	38	1.39
29460869--29460910	16	2.7	15	89	7	66	9	50	2	38	1.48
29461319--29461377	25	2.4	25	97	0	109	18	10	20	50	1.75
29467763--29468152	132	3.0	131	88	2	575	25	24	19	29	1.99
29467741--29468154	131	3.1	132	85	2	582	25	25	19	29	1.98
29468911--29469171	129	2.0	130	99	0	515	39	8	19	32	1.82
29469494--29469532	18	2.2	17	86	13	53	30	0	20	48	1.50
29469856--29469954	23	4.3	23	81	2	128	24	19	25	31	1.98
29469859--29469947	46	1.9	46	90	0	142	23	19	25	31	1.98
29471922--29472149	45	5.1	45	69	10	189	23	24	24	28	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141