genome.fa.s1.2.7.7.80.10.50.1000.82.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  82  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26827636--26827707	20	3.5	20	68	17	65	63	2	6	26	1.33
26836857--26836907	24	2.1	24	82	7	59	31	13	15	39	1.87
26840062--26840104	21	2.0	22	86	9	61	39	9	6	44	1.64
26840790--26840839	5	9.8	5	89	4	64	0	26	0	74	0.83
26840790--26840840	15	3.3	15	86	2	75	0	27	0	72	0.85
26841737--26841778	16	2.7	15	82	7	57	54	14	0	30	1.40
26842051--26842102	22	2.4	21	75	15	61	44	0	0	55	0.99
26849126--26849158	15	2.1	16	88	5	50	39	3	0	57	1.14
26851324--26851357	16	2.1	16	94	0	59	26	2	17	52	1.58
26854220--26854738	284	1.8	284	87	2	774	47	16	14	21	1.82
26860039--26860181	3	47.7	3	100	0	286	32	0	0	67	0.91
26861439--26861469	3	10.3	3	100	0	62	32	0	0	67	0.91
26866497--26866536	20	2.0	20	90	0	62	27	10	12	50	1.72
26866482--26866548	34	1.9	35	90	3	109	31	8	13	46	1.74
26866476--26866552	14	5.0	15	71	20	52	33	9	14	42	1.77
26872192--26872226	18	1.9	18	100	0	70	22	14	17	45	1.84
26875413--26875445	4	8.2	4	100	0	66	75	0	0	24	0.80
26875709--26875772	3	22.3	3	84	15	91	64	0	1	34	1.03
26875697--26875776	21	3.9	21	81	18	82	65	0	2	32	1.06
26875706--26875766	8	7.4	8	89	10	88	63	0	0	36	0.94
26876582--26876620	19	2.1	19	100	0	78	64	0	15	20	1.30
26876582--26876640	19	2.9	22	83	14	65	66	1	15	16	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26889040--26889065	4	6.5	4	100	0	52	76	0	0	23	0.78
26890567--26890613	24	1.9	25	95	4	87	17	4	4	74	1.14
26897586--26897684	40	2.5	40	79	4	105	30	25	18	26	1.98
26898631--26898707	40	1.9	41	86	7	113	46	7	1	44	1.40
26900590--26900619	14	2.1	14	100	0	60	40	36	0	23	1.55
26911316--26911358	16	2.6	16	85	3	50	72	11	13	2	1.22
26912989--26913093	31	3.3	32	74	9	92	51	6	7	34	1.57
26912982--26913062	32	2.5	31	78	9	83	53	3	8	34	1.50
26913111--26913145	18	2.0	17	94	5	61	51	5	0	42	1.25
26914851--26915547	127	5.5	127	91	1	1066	30	16	23	28	1.97
26916534--26916734	22	9.2	22	84	4	264	25	0	30	42	1.59
26916534--26916734	87	2.3	87	87	3	280	25	0	30	42	1.59
26916544--26916735	65	3.0	65	89	3	298	26	0	29	44	1.55
26920044--26920069	7	3.7	7	100	0	52	57	15	0	26	1.38
26920238--26920275	20	1.9	20	84	10	51	55	7	2	34	1.43
26924646--26924680	7	5.0	7	100	0	70	42	28	0	28	1.56
26930499--26930526	7	4.0	7	100	0	56	42	28	0	28	1.56
26932555--26932603	13	3.7	14	76	20	52	22	4	2	71	1.13
26943064--26944268	45	26.9	44	76	8	867	34	16	18	30	1.93
26943064--26944268	89	13.4	88	75	7	892	34	16	18	30	1.93
26943064--26944275	134	9.0	133	75	8	853	34	16	18	30	1.93
26943064--26944275	179	6.8	179	74	9	762	34	16	18	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26943064--26944077	313	3.2	309	79	5	969	34	16	18	30	1.93
26943458--26944478	134	7.4	140	74	11	492	35	15	18	30	1.92
26944297--26944489	44	4.2	44	71	10	136	34	15	20	30	1.93
26944134--26944442	156	2.0	157	88	0	458	36	14	18	30	1.90
26944341--26944539	95	2.1	95	88	1	292	33	17	20	29	1.95
26945172--26945226	23	2.5	22	73	5	56	70	5	12	10	1.31
26946226--26946335	3	36.7	3	76	10	100	32	3	2	60	1.28
26948509--26948546	9	4.2	9	86	0	58	52	0	2	44	1.14
26948509--26948547	13	2.9	13	80	3	51	51	0	2	46	1.14
26949352--26949408	30	1.9	29	86	10	80	50	7	1	40	1.40
26951385--26951483	19	5.2	19	73	13	71	67	2	3	27	1.16
26951386--26951475	29	3.2	27	75	6	81	68	2	3	25	1.16
26951396--26951492	28	3.4	27	76	8	95	65	2	2	29	1.15
26951381--26951483	10	10.7	10	69	14	56	66	1	2	29	1.17
26951413--26951509	28	3.4	27	78	12	97	60	3	4	31	1.31
26951494--26951553	20	3.0	20	71	11	61	58	5	8	28	1.48
26951744--26951928	90	2.0	90	84	6	239	30	8	18	41	1.81
26968981--26969009	8	3.8	8	95	4	51	55	10	0	34	1.34
26969325--26969355	16	1.9	16	93	0	53	9	9	9	70	1.33
26970945--26970998	20	2.7	20	82	5	74	44	1	3	50	1.30
26974434--26974659	27	8.4	27	82	4	269	43	19	19	17	1.88
26974434--26974657	54	4.2	54	85	1	297	44	19	19	17	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26974435--26974638	107	1.9	107	90	0	327	44	18	19	17	1.87
26974832--26974908	26	3.0	26	84	0	100	14	20	24	40	1.90
26975016--26975135	28	4.3	28	83	2	143	22	24	25	27	2.00
26984614--26984686	21	3.4	21	84	5	94	0	31	19	49	1.48
26988437--26988557	60	2.0	62	88	8	185	27	6	47	19	1.74
26988644--26988690	23	2.0	23	83	0	58	46	23	19	10	1.80
26989352--26989417	19	3.6	19	71	22	68	18	3	45	33	1.65
26989363--26989420	17	3.3	17	74	25	66	17	1	51	29	1.55
26989391--26989435	15	2.9	15	87	12	56	15	0	51	33	1.44
26989387--26989435	24	2.1	22	85	7	62	14	0	55	30	1.40
26996148--26996199	21	2.5	21	87	0	77	34	30	5	28	1.81
27003783--27003826	23	2.0	22	81	4	52	43	13	15	27	1.85
27010016--27010088	35	2.1	35	97	0	137	28	12	19	39	1.88
27012583--27012648	29	2.2	30	84	13	82	50	0	12	37	1.40
27012612--27012664	28	1.9	27	85	11	72	37	0	16	45	1.48
27012736--27013407	126	5.4	125	84	4	811	39	15	16	29	1.89
27012739--27013407	124	5.4	125	84	5	818	39	14	16	28	1.89
27013480--27013551	25	2.9	25	87	4	101	50	2	26	20	1.62
27015438--27015484	22	2.2	22	85	11	62	55	0	4	40	1.19
27021635--27021669	18	2.0	18	88	5	54	14	28	45	11	1.79
27022628--27022675	18	2.7	18	83	0	60	43	2	16	37	1.60
27023338--27023367	8	3.8	8	100	0	60	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27023684--27023716	17	1.9	17	100	0	66	15	30	12	42	1.83
27024116--27024148	17	1.9	17	100	0	66	15	30	12	42	1.83
27023375--27024239	432	2.0	433	99	0	1723	41	18	15	25	1.89
27027062--27027115	12	4.8	12	73	13	51	33	24	1	40	1.66
27027091--27027131	21	2.0	21	85	0	55	29	24	2	43	1.67
27028778--27028860	25	3.3	25	77	11	89	30	21	26	21	1.99
27033448--27033575	53	2.5	50	71	15	118	50	1	26	21	1.58
27035125--27035190	8	8.9	7	76	20	55	3	21	0	75	0.93
27035120--27035193	14	4.9	15	82	15	91	2	24	0	72	0.97
27035120--27035195	31	2.5	31	93	0	125	2	25	0	72	0.98
27041864--27042042	8	21.2	8	70	12	67	13	6	5	74	1.17
27041940--27042018	20	3.8	20	80	9	86	13	5	3	77	1.08
27041932--27042028	4	24.5	4	72	10	56	15	4	4	76	1.09
27041940--27042031	20	4.4	20	76	12	71	16	4	3	76	1.08
27041932--27042074	12	11.8	12	69	14	64	18	2	4	74	1.12
27041931--27042074	16	8.6	17	67	17	70	18	2	4	74	1.12
27042054--27042082	14	2.1	14	93	6	51	24	0	6	68	1.13
27045504--27045639	41	3.5	40	79	6	136	32	22	18	26	1.97
27046491--27046547	25	2.3	25	84	6	80	3	19	3	73	1.12
27048696--27048729	7	4.9	7	96	0	59	29	0	2	67	1.05
27048696--27048732	14	2.6	14	91	0	65	27	0	5	67	1.12
27051334--27051469	41	3.5	40	79	6	136	32	22	18	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27052321--27052377	25	2.3	25	84	6	80	3	19	3	73	1.12
27052440--27052491	27	1.9	27	88	0	77	44	1	1	51	1.23
27058944--27058978	17	2.0	18	88	5	54	45	11	8	34	1.71
27059300--27059409	41	2.8	41	84	5	138	34	23	17	24	1.96
27060927--27060961	15	2.3	15	95	0	61	34	2	17	45	1.63
27062806--27062851	22	2.1	21	92	4	74	23	21	0	54	1.45
27070709--27070790	41	2.0	41	97	0	155	37	7	3	51	1.48
27072111--27072138	2	14.0	2	100	0	56	50	0	0	50	1.00
27078774--27078798	12	2.1	12	100	0	50	24	36	24	16	1.94
27079386--27079430	7	6.3	7	79	5	54	55	13	15	15	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141