genome.fa.s1.2.7.7.80.10.50.1000.105.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  105  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34009971--34010216	87	2.8	87	88	0	348	31	21	20	26	1.98
34012332--34012386	27	2.1	26	86	3	74	30	3	5	60	1.37
34016495--34016558	29	2.2	29	85	0	83	32	21	12	32	1.91
34017181--34017240	27	2.2	27	85	5	77	35	16	16	31	1.92
34018117--34018166	25	2.0	25	92	0	82	18	18	32	32	1.94
34018119--34018173	25	2.2	25	86	0	74	20	21	29	29	1.98
34020938--34020993	23	2.4	23	84	0	76	21	21	12	44	1.85
34025395--34025427	17	1.9	17	93	0	57	0	18	3	78	0.87
34038580--34038736	42	3.7	42	78	11	160	22	19	28	29	1.98
34059071--34059116	23	2.0	23	87	4	67	60	2	2	34	1.21
34062828--34062875	23	2.1	22	81	11	53	56	4	2	37	1.30
34063201--34063301	31	3.2	31	68	22	93	36	13	2	46	1.59
34063201--34063328	63	2.0	63	98	0	247	37	14	2	46	1.57
34073637--34073789	53	2.9	53	83	0	173	35	11	23	29	1.89
34076025--34076090	34	1.9	34	84	6	89	37	13	15	33	1.86
34078728--34078960	119	1.9	122	88	2	355	44	5	6	44	1.52
34079621--34079725	49	2.1	50	87	1	149	27	0	28	42	1.62
34079823--34080481	126	5.3	126	83	1	795	39	13	18	28	1.89
34102079--34102243	84	2.0	84	90	0	258	30	14	24	29	1.95
34106948--34106986	10	3.8	10	83	6	51	58	2	0	38	1.12
34107221--34107350	37	3.4	37	66	19	104	42	10	10	36	1.75
34107220--34107378	79	2.0	79	98	0	309	42	11	9	36	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34121974--34122045	36	2.0	36	100	0	144	22	19	5	52	1.66
34126637--34126664	13	2.2	13	100	0	56	39	0	0	60	0.97
34126846--34126991	40	3.7	40	82	3	186	16	27	16	39	1.90
34126906--34126971	20	3.3	20	70	8	62	15	25	16	42	1.87
34126925--34127091	20	8.4	20	80	7	196	18	32	14	33	1.92
34126925--34127074	60	2.5	60	92	2	239	18	33	14	33	1.91
34132065--34132158	46	2.0	46	100	0	188	35	25	4	35	1.76
34132082--34132154	22	3.2	22	63	14	58	34	24	4	36	1.75
34141011--34141099	25	3.6	25	81	3	99	32	22	17	26	1.97
34146563--34146597	17	2.1	17	94	0	61	48	8	5	37	1.58
34147579--34147617	10	4.1	9	86	6	51	61	2	0	35	1.10
34147780--34147841	29	2.1	29	100	0	124	46	24	3	25	1.67
34165154--34165229	38	2.0	39	94	2	136	51	27	2	18	1.59
34165400--34165439	9	4.4	9	83	0	53	27	10	22	40	1.86
34165400--34165439	18	2.2	18	95	0	71	27	10	22	40	1.86
34165504--34165559	24	2.3	24	75	0	67	39	5	17	37	1.73
34165663--34165761	38	2.6	38	83	1	99	31	18	26	24	1.97
34165713--34166158	72	6.1	73	79	5	433	38	16	20	25	1.93
34165713--34166214	35	13.9	35	77	6	349	38	16	20	25	1.92
34165706--34166153	109	4.1	106	77	9	384	38	16	19	25	1.92
34165677--34166158	38	13.2	36	79	7	370	37	16	20	24	1.93
34167764--34167805	22	1.9	22	95	0	75	9	21	28	40	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34167880--34168119	43	5.6	43	73	7	182	31	30	15	22	1.95
34167884--34168119	87	2.7	86	82	2	249	31	30	15	22	1.95
34180110--34180379	76	3.3	83	77	14	256	32	25	17	25	1.97
34180673--34180725	20	2.6	20	79	8	54	24	1	7	66	1.28
34181168--34181200	16	2.1	16	94	5	59	39	30	0	30	1.57
34181946--34182370	114	3.7	114	88	1	620	26	22	19	31	1.98
34186506--34186850	45	7.6	45	73	13	179	29	22	18	29	1.97
34186932--34187059	45	2.8	45	75	3	123	26	17	19	35	1.94
34186994--34187228	105	2.2	105	87	4	357	29	20	18	32	1.96
34187284--34187400	44	2.7	43	88	3	166	29	23	20	26	1.99
34188627--34188673	21	2.2	21	84	0	58	29	25	17	27	1.97
34195825--34195860	18	1.9	19	88	5	56	38	0	27	33	1.57
34197334--34197369	18	1.9	19	88	5	56	38	0	27	33	1.57
34197894--34198006	41	2.9	41	77	9	144	28	19	19	32	1.96
34197898--34198002	37	2.7	38	79	5	122	27	20	20	31	1.97
34207098--34207369	40	6.7	40	86	6	386	29	24	21	24	1.99
34207083--34207371	122	2.4	125	88	5	430	30	24	21	23	1.99
34207098--34207369	82	3.3	82	92	4	446	29	24	21	24	1.99
34209626--34209942	40	7.8	40	81	4	391	28	24	22	25	1.99
34209615--34209949	82	4.1	82	100	0	670	29	24	21	23	1.99
34212394--34212436	22	1.9	22	90	4	68	53	6	2	37	1.41
34213390--34213429	18	2.2	18	86	8	55	40	5	0	55	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34219863--34220072	105	2.0	105	97	0	393	37	20	8	33	1.82
34244415--34244450	11	3.1	11	92	8	54	19	0	0	80	0.71
34249300--34249336	19	1.9	19	100	0	74	32	24	21	21	1.98
34250667--34250804	68	2.0	71	85	5	192	51	5	3	39	1.43
34265362--34265422	28	2.2	27	91	2	95	29	22	24	22	1.99
34265785--34265982	27	7.3	27	84	5	231	24	17	19	38	1.92
34265786--34265982	81	2.4	81	85	1	261	24	16	19	39	1.92
34268980--34269050	25	2.9	23	82	14	79	28	18	12	40	1.87
34277233--34277450	107	2.0	109	98	1	422	54	7	8	29	1.58
34279079--34279123	18	2.5	18	82	7	56	40	17	4	37	1.70
34279071--34279274	105	1.9	105	92	2	338	26	15	13	44	1.84
34284868--34284909	15	2.5	17	88	11	61	40	0	0	59	0.97
34284880--34284906	10	2.7	10	100	0	54	40	0	0	59	0.98
34286471--34286509	16	2.4	16	87	8	53	48	2	25	23	1.63
34286783--34286828	23	2.0	23	95	0	83	19	21	19	39	1.93
34286782--34286868	23	4.1	21	75	17	81	20	20	20	37	1.94
34287915--34287964	24	2.1	24	92	0	82	14	34	32	20	1.92
34289343--34289583	5	48.2	5	100	0	482	59	0	0	40	0.97
34295653--34295716	26	2.5	24	80	11	83	34	7	12	45	1.71
34295655--34295707	26	2.0	26	96	0	97	35	5	11	47	1.63
34312396--34312859	27	17.1	27	83	4	414	18	17	23	40	1.91
34314246--34314282	16	2.2	18	85	9	51	75	2	13	8	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34331575--34331611	9	4.1	9	92	0	65	45	13	10	29	1.77
34332322--34332347	5	5.2	5	100	0	52	19	19	19	42	1.90
34335504--34335990	246	2.0	244	90	3	764	46	14	10	28	1.78
34336810--34336847	18	2.2	18	90	9	62	71	2	5	21	1.19
34337002--34337067	33	2.0	33	96	0	123	27	22	10	39	1.87
34337506--34337543	18	2.2	18	90	9	62	71	2	5	21	1.19
34337698--34337763	33	2.0	33	96	0	123	27	22	10	39	1.87
34336477--34337868	696	2.0	696	99	0	2768	32	13	11	42	1.79
34344149--34344187	6	6.5	6	87	0	60	79	5	0	15	0.90
34347666--34347701	18	1.9	19	88	5	56	72	8	5	13	1.27
34351300--34351361	30	2.1	30	90	6	99	48	9	8	33	1.65
34360450--34360480	14	2.2	14	94	0	53	38	0	41	19	1.51
34375996--34376059	17	3.5	17	69	19	56	29	10	14	45	1.78
34376285--34376381	49	2.0	48	91	2	158	19	15	23	41	1.90
34381096--34381174	39	2.0	39	97	0	149	29	10	13	46	1.76
34381096--34381157	22	3.0	22	64	22	62	29	9	14	46	1.76
34381404--34381497	48	1.9	49	84	2	127	20	13	22	43	1.87
34381969--34382000	15	2.0	17	88	11	50	28	3	0	68	1.04
34394645--34394692	18	2.6	18	75	15	53	41	6	12	39	1.68
34414062--34414630	27	21.2	27	82	3	585	19	16	20	43	1.88
34421223--34421433	102	2.1	103	98	0	406	42	12	16	28	1.85
34424698--34424736	18	2.2	18	90	0	60	15	5	5	74	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34429333--34429383	23	2.2	23	82	6	59	50	13	23	11	1.74
34435007--34435043	18	2.1	18	90	5	58	59	0	2	37	1.12
34436823--34437010	93	2.0	93	100	0	376	48	10	13	27	1.75
34438497--34438570	34	2.2	34	82	4	87	28	18	22	29	1.98
34439035--34439178	27	5.4	27	92	0	227	15	17	22	43	1.87
34442493--34442582	27	3.4	26	81	4	99	20	15	17	46	1.84
34447573--34447607	18	2.0	18	94	5	63	11	22	45	20	1.82
34451771--34451828	26	2.2	27	78	9	66	24	5	1	68	1.19
34453498--34453524	9	3.0	9	100	0	54	33	22	22	22	1.97
34458186--34458222	16	2.3	16	86	13	58	54	5	0	40	1.24

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141