genome.fa.s1.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  108  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35024595--35024628	13	2.7	12	86	13	50	14	17	0	67	1.23
35025537--35025613	23	3.5	21	76	11	66	9	7	6	76	1.15
35025565--35025615	15	3.3	15	76	15	59	11	3	5	78	1.06
35025446--35025728	143	2.0	142	95	2	505	11	11	5	71	1.29
35027745--35027782	20	1.9	20	94	0	67	15	21	5	57	1.57
35030162--35030191	3	10.0	3	92	0	51	66	3	0	30	1.07
35030154--35030217	15	4.3	15	76	11	53	65	6	0	28	1.16
35032727--35032756	9	3.2	9	90	9	51	10	3	0	86	0.67
35050267--35050303	20	2.0	20	84	10	51	5	18	8	67	1.36
35050402--35050453	18	2.9	18	85	8	70	44	0	0	55	0.99
35052056--35052091	3	12.0	3	100	0	72	66	0	0	33	0.92
35052151--35052184	17	1.9	18	88	5	52	76	0	23	0	0.79
35060512--35060548	20	2.0	20	84	10	51	5	18	8	67	1.36
35060647--35060698	18	2.9	18	85	8	70	44	0	0	55	0.99
35062301--35062336	3	12.0	3	100	0	72	66	0	0	33	0.92
35062396--35062429	17	1.9	18	88	5	52	76	0	23	0	0.79
35070780--35070825	19	2.4	19	88	0	74	34	10	28	26	1.90
35074832--35074882	3	17.0	3	100	0	102	66	0	33	0	0.92
35077639--35077674	3	12.0	3	87	0	54	0	66	0	33	0.92
35077693--35077750	3	19.7	3	85	3	82	0	29	1	68	0.99
35094961--35095006	23	2.0	23	100	0	92	56	8	4	30	1.49
35102338--35102381	22	2.0	23	82	13	56	65	4	15	13	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35102498--35102540	22	2.0	22	86	9	61	6	9	9	74	1.22
35103393--35103517	62	2.1	59	86	4	169	30	13	2	53	1.53
35104391--35104588	107	1.9	106	87	3	290	29	14	19	35	1.92
35111853--35111882	1	30.0	1	100	0	60	0	0	0	100	0.00
35116701--35116734	7	4.9	7	92	0	59	38	29	0	32	1.58
35118139--35118234	3	32.0	3	97	0	174	31	0	2	66	1.03
35121556--35121697	54	2.6	55	80	4	146	21	22	23	31	1.98
35130249--35130371	66	1.9	65	80	8	142	39	38	8	13	1.75
35130661--35130709	13	3.8	13	81	5	55	6	16	0	77	0.96
35130659--35130710	25	2.1	25	82	7	61	9	15	0	75	1.05
35130726--35130763	17	2.2	17	90	0	58	15	5	0	78	0.91
35136071--35136113	6	6.8	6	97	2	68	86	0	13	0	0.58
35136070--35136114	7	6.9	7	94	5	69	86	0	13	0	0.57
35136060--35136113	12	4.6	11	82	15	56	85	0	12	1	0.69
35138118--35139857	85	20.3	85	94	2	2246	27	22	23	26	1.99
35139413--35139727	44	7.2	43	68	12	212	26	21	24	27	2.00
35139365--35139898	176	3.0	174	89	3	761	27	22	24	25	2.00
35140449--35140759	154	2.0	155	96	0	579	34	16	17	32	1.92
35140789--35140897	49	2.2	50	90	1	166	28	11	12	46	1.77
35141459--35141548	39	2.2	40	90	3	137	40	2	4	53	1.33
35141832--35141870	14	2.7	14	92	4	60	0	35	0	64	0.94
35142010--35142057	24	2.0	25	83	4	62	62	6	0	31	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35142648--35142787	45	3.0	45	91	3	208	15	13	52	17	1.74
35142660--35142787	24	5.5	24	91	5	190	14	14	52	17	1.75
35147710--35147743	16	2.1	16	89	10	52	32	0	0	67	0.91
35149093--35149132	5	7.8	5	83	5	53	42	0	0	57	0.98
35149434--35149485	15	3.5	15	89	0	77	34	3	1	59	1.27
35149433--35149489	5	11.4	5	80	0	69	35	3	1	59	1.25
35150074--35150118	23	1.9	24	86	13	67	55	2	22	20	1.54
35162378--35162412	18	2.0	17	88	5	52	45	0	0	54	0.99
35162648--35162683	16	2.2	16	100	0	72	38	36	0	25	1.56
35162916--35163016	30	3.3	31	78	10	102	40	5	1	51	1.38
35163460--35163513	28	1.9	27	82	14	65	62	5	9	22	1.45
35164863--35165036	43	4.1	43	77	3	140	35	27	13	24	1.93
35173783--35173973	45	4.4	43	88	5	285	35	0	15	48	1.49
35173783--35173973	87	2.2	88	94	0	330	35	0	15	48	1.49
35173783--35173971	9	21.6	9	69	12	90	34	0	15	48	1.50
35174626--35174660	13	2.6	14	81	9	54	48	17	17	17	1.81
35177038--35177256	72	3.1	72	76	4	235	45	13	5	35	1.68
35177613--35177643	12	2.6	12	94	0	53	19	41	3	35	1.67
35179163--35179206	22	2.0	22	82	8	54	59	11	2	27	1.44
35184038--35184090	27	2.0	27	96	0	97	18	11	56	13	1.66
35185048--35185111	30	2.2	29	82	2	74	29	9	7	53	1.61
35185809--35185877	32	2.2	32	87	7	97	44	8	4	42	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35186038--35186103	28	2.4	28	97	0	123	40	10	0	48	1.38
35186144--35186202	27	2.2	27	87	0	82	30	25	28	15	1.96
35187595--35187895	113	2.6	115	92	5	482	30	20	15	32	1.94
35187789--35187993	98	2.0	100	88	6	306	31	19	15	34	1.92
35187988--35188046	27	2.2	27	87	0	82	15	28	25	30	1.96
35188096--35188163	29	2.3	30	87	5	95	50	1	7	41	1.39
35190671--35191099	214	2.0	215	99	0	851	33	7	12	46	1.71
35194039--35194076	14	2.7	14	91	0	58	36	0	5	57	1.21
35194831--35194907	34	2.3	34	76	0	82	32	6	9	51	1.59
35194971--35195046	28	2.8	26	74	18	75	40	3	5	50	1.44
35194961--35195057	27	3.6	25	68	15	70	38	3	4	54	1.35
35198434--35198478	19	2.4	19	88	3	65	26	11	13	48	1.75
35203625--35203665	21	2.0	21	95	0	73	34	36	0	29	1.58
35207601--35207633	17	1.9	17	100	0	66	48	9	0	42	1.35
35209212--35209317	5	21.0	5	99	0	203	20	0	0	79	0.74
35211498--35211726	38	6.0	38	98	0	449	36	26	0	37	1.57
35211504--35211564	19	3.2	19	63	9	52	34	26	0	39	1.57
35221481--35221537	30	1.9	30	96	0	105	19	14	17	49	1.80
35221813--35221870	26	2.2	26	96	0	107	13	25	17	43	1.86
35228033--35228134	41	2.6	39	89	7	145	30	15	17	36	1.91
35230578--35230980	201	2.0	202	99	0	799	30	14	13	41	1.84
35231960--35231988	9	3.2	9	100	0	58	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35231959--35232003	18	2.5	18	82	7	56	44	6	0	48	1.29
35232507--35232544	15	2.5	15	91	0	58	50	23	0	26	1.50
35233005--35233042	19	2.1	19	85	5	51	65	5	2	26	1.27
35241653--35241691	3	13.3	3	94	5	71	69	0	30	0	0.89
35250085--35250162	26	2.9	26	78	14	70	57	0	1	41	1.07
35252022--35252074	18	2.7	19	77	14	54	58	3	0	37	1.16
35252022--35252077	20	2.9	18	78	10	58	57	3	0	39	1.16
35252615--35252651	18	2.0	18	89	5	56	37	0	0	62	0.96
35253807--35253880	28	2.7	28	76	12	82	58	0	4	37	1.17
35255815--35255864	21	2.4	22	86	6	68	44	0	0	56	0.99
35259732--35259798	34	2.0	34	85	5	91	22	23	25	28	1.99
35260065--35260136	27	2.7	26	78	6	74	34	16	16	31	1.92
35260242--35260304	9	7.0	9	94	0	108	44	11	0	44	1.39
35261837--35261907	23	3.1	23	97	0	133	22	25	19	32	1.98
35262561--35262600	15	2.6	16	80	8	55	2	25	0	72	0.97
35268713--35268764	20	2.7	20	81	3	61	34	15	30	19	1.93
35270180--35270232	21	2.6	21	96	3	99	26	13	16	43	1.85
35270495--35270520	12	2.2	12	100	0	52	61	0	0	38	0.96
35270532--35270674	71	2.0	72	98	1	279	33	4	6	55	1.46
35274415--35275093	340	2.0	339	93	0	1169	42	7	14	34	1.75
35275128--35275164	16	2.2	17	90	4	58	51	0	8	40	1.32
35276585--35276644	6	9.8	6	83	1	75	56	0	28	15	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35280961--35281036	22	3.5	22	77	0	71	17	22	14	46	1.84
35291456--35291499	21	2.1	21	83	8	54	13	9	36	40	1.76
35297018--35297081	30	2.2	30	94	2	112	28	3	10	57	1.48
35306626--35307121	40	12.4	40	88	0	688	44	27	14	12	1.81
35308046--35308090	20	2.2	20	100	0	90	40	28	4	26	1.75
35308040--35308090	20	2.5	19	93	6	75	43	27	3	25	1.72
35315716--35315749	17	2.0	18	88	11	54	47	0	11	41	1.40
35318937--35319052	58	2.0	59	84	5	155	30	18	5	45	1.71
35320372--35320475	41	2.5	41	84	6	131	25	24	19	30	1.98
35320416--35320749	70	4.8	70	84	0	382	24	19	21	34	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141