genome.fa.s1.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  11  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3532777--3532818	21	2.0	20	86	4	57	52	0	0	47	1.00
3533204--3533243	21	1.9	21	85	10	55	40	15	17	27	1.89
3534747--3534789	20	2.2	19	80	15	52	55	0	4	39	1.20
3556318--3556395	34	2.3	34	82	6	86	28	17	23	30	1.97
3556855--3557095	81	3.0	80	87	3	331	19	17	19	42	1.89
3556857--3557097	27	8.9	27	82	3	281	19	17	19	43	1.88
3559365--3559406	21	2.0	21	86	9	59	23	4	7	64	1.38
3562238--3563111	436	2.0	437	99	0	1741	36	14	17	31	1.90
3563879--3563912	14	2.5	14	90	4	52	26	20	2	50	1.63
3566270--3566308	20	2.0	20	90	10	62	51	30	5	12	1.62
3566715--3566758	20	2.2	20	84	8	54	20	18	2	59	1.49
3567393--3567536	49	2.9	49	84	3	164	31	21	22	24	1.98
3567409--3567506	25	4.0	24	79	11	101	31	20	23	24	1.98
3575839--3575908	37	1.9	35	88	5	104	44	2	4	48	1.37
3577972--3578872	99	9.1	99	86	3	969	25	24	20	29	1.99
3578270--3578427	49	3.2	49	65	10	124	23	23	20	32	1.98
3578072--3578872	296	2.7	295	82	4	948	25	24	20	29	1.99
3578154--3578872	50	14.5	49	63	9	242	25	24	20	29	1.99
3578864--3579194	167	2.0	167	86	1	466	27	26	18	27	1.98
3579117--3579235	50	2.4	50	76	5	114	31	24	21	23	1.98
3579242--3579411	88	1.9	88	83	2	216	27	28	18	25	1.98
3584088--3584163	24	3.1	24	81	14	84	60	2	15	21	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3584101--3584164	27	2.5	25	85	12	78	64	3	15	17	1.42
3584120--3584176	27	2.1	27	86	0	78	63	8	12	15	1.52
3592944--3593846	50	18.2	50	67	7	381	26	24	19	28	1.99
3592944--3593846	99	9.1	99	87	2	1042	26	24	19	28	1.99
3593827--3594136	167	1.9	167	87	0	458	25	29	18	26	1.98
3594216--3594385	88	1.9	88	86	0	241	27	27	19	25	1.99
3600138--3600193	24	2.4	23	82	11	62	60	1	14	23	1.43
3613402--3613440	20	2.0	20	90	10	62	51	25	5	17	1.66
3614535--3614601	25	2.7	25	86	4	82	23	22	25	28	1.99
3614535--3614626	25	3.7	25	80	0	67	28	21	22	27	1.99
3617710--3617813	29	3.6	30	74	6	97	32	12	20	34	1.90
3617730--3617825	29	3.3	29	77	0	102	25	14	22	37	1.92
3626032--3626086	22	2.6	21	80	8	67	74	18	3	3	1.11
3628503--3628643	41	3.4	41	77	7	167	34	24	18	21	1.96
3628496--3628689	84	2.3	84	90	0	316	35	24	18	22	1.96
3628496--3628700	43	4.8	44	74	13	189	35	24	17	22	1.95
3628708--3628757	26	1.9	26	91	0	82	32	34	16	18	1.92
3634473--3634579	45	2.4	45	82	4	126	18	19	17	43	1.88
3634552--3634677	45	2.8	45	81	2	128	26	21	15	37	1.92
3634655--3634763	45	2.4	45	84	3	130	17	16	18	47	1.83
3644579--3644804	113	2.0	113	100	0	452	25	12	18	43	1.85
3645274--3645454	40	4.5	40	85	0	209	16	29	16	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3645351--3645424	20	3.7	19	71	15	60	13	28	17	40	1.87
3648906--3648954	20	2.5	20	80	3	64	65	4	0	30	1.11
3654956--3655117	44	3.7	44	80	5	159	25	25	19	29	1.99
3658735--3658983	123	2.0	124	96	0	464	19	26	22	32	1.97
3668324--3668358	18	1.9	18	88	11	54	57	2	11	28	1.48
3669474--3669584	55	2.0	55	100	0	222	21	21	45	10	1.82
3670431--3670465	17	2.1	16	94	5	61	17	0	8	74	1.06
3673356--3673391	18	2.0	18	94	0	63	25	30	16	27	1.97
3676892--3676946	22	2.8	20	86	13	71	43	20	10	25	1.84
3676901--3676951	22	2.3	22	96	0	93	39	21	13	25	1.90
3681936--3681977	22	1.9	22	100	0	84	47	21	9	21	1.79
3683138--3683175	18	2.1	18	85	9	51	7	21	18	52	1.70
3685225--3685266	20	2.1	20	86	8	59	30	0	2	66	1.04
3685288--3685370	29	2.9	30	80	8	84	34	4	0	60	1.18
3685288--3685370	28	2.9	29	80	5	89	34	4	0	60	1.18
3685345--3685393	19	2.8	17	84	9	62	24	4	0	71	1.03
3685351--3685393	17	2.4	17	88	7	59	23	4	0	72	1.04
3685347--3685395	18	2.5	20	78	15	59	26	4	0	69	1.06
3694168--3694260	46	2.0	46	100	0	186	33	15	21	30	1.94
3694929--3694955	14	1.9	14	100	0	54	48	22	0	29	1.51
3696291--3696334	20	2.2	20	84	8	54	47	15	2	34	1.58
3715387--3715441	28	1.9	29	85	3	76	45	23	0	30	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3718416--3718456	7	5.9	7	97	0	73	46	0	0	53	1.00
3718408--3718456	21	2.4	21	86	3	73	51	0	0	48	1.00
3721637--3721669	16	2.1	15	94	5	57	63	0	0	36	0.95
3724451--3724837	124	3.1	123	85	3	499	31	16	18	33	1.93
3724741--3724975	84	2.8	85	85	1	301	30	17	17	34	1.94
3725122--3725243	7	16.6	7	70	13	57	24	0	27	47	1.52
3725120--3725171	22	2.4	21	90	6	77	23	0	30	46	1.53
3725122--3725243	30	4.1	29	82	4	122	24	0	27	47	1.52
3725164--3725242	22	3.5	23	84	5	90	24	0	26	49	1.51
3730033--3730345	43	7.3	43	79	5	301	27	15	23	33	1.95
3736813--3736883	32	2.2	32	97	0	133	35	2	25	36	1.71
3745853--3745910	29	2.1	27	81	18	66	25	6	0	67	1.16
3746078--3746366	144	2.0	144	95	1	517	43	4	25	25	1.74
3746530--3746647	51	2.3	51	94	1	202	48	0	18	32	1.54
3746725--3746780	19	2.8	20	74	15	62	58	3	10	26	1.48
3749352--3749402	25	2.0	25	96	0	93	39	0	17	43	1.49
3763256--3763625	182	2.0	182	94	0	641	43	25	4	26	1.73
3764399--3764557	46	3.4	46	80	5	158	32	19	20	27	1.97
3775940--3775972	15	2.1	17	88	11	52	42	0	0	57	0.98
3776078--3776151	29	2.5	29	86	4	94	25	13	13	47	1.79
3786725--3786750	13	2.0	13	100	0	52	30	7	15	46	1.74
3786784--3786823	19	2.0	20	85	4	55	25	20	7	47	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3788424--3788463	19	2.1	19	90	9	64	12	15	5	67	1.38
3789408--3789457	14	3.6	14	72	17	50	66	0	22	12	1.24
3790681--3791354	45	15.1	45	76	13	592	31	16	24	27	1.97
3790681--3791354	89	7.6	89	84	7	744	31	16	24	27	1.97
3791332--3791368	14	2.6	14	95	0	65	48	10	24	16	1.77
3795013--3795285	29	9.4	29	78	4	199	23	26	12	38	1.90
3795013--3795285	116	2.3	116	84	1	350	23	26	12	38	1.90
3808146--3808206	25	2.4	25	78	10	63	39	3	1	55	1.26
3808694--3808727	17	2.0	17	100	0	68	23	11	35	29	1.90
3820464--3820558	25	3.8	25	75	5	93	23	23	24	29	1.99
3826861--3826914	26	2.2	24	81	18	58	59	5	0	35	1.21
3829311--3829439	43	3.1	42	74	15	140	37	24	14	23	1.93
3829376--3829517	74	1.9	74	88	0	212	38	21	16	22	1.93
3840089--3840146	30	1.9	31	82	3	73	46	1	8	43	1.44
3843455--3844103	322	2.0	322	98	0	1262	29	20	15	34	1.94
3854949--3854987	19	2.0	21	90	10	64	23	10	10	56	1.63
3863789--3863813	12	2.1	12	100	0	50	16	36	32	16	1.90
3866746--3866781	8	4.5	8	96	0	54	66	5	0	27	1.13
3869289--3869387	26	3.7	26	85	5	110	32	22	16	29	1.95
3869309--3869387	26	3.0	26	90	5	124	30	24	15	30	1.95
3869320--3869424	27	3.9	28	83	10	139	32	23	15	28	1.95
3870171--3870396	112	2.0	112	98	0	434	31	27	5	35	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3870848--3870927	7	11.4	7	98	0	142	2	27	0	70	1.01
3873352--3873415	19	3.0	21	82	10	60	37	18	6	37	1.76
3873355--3873399	23	2.0	22	86	4	63	33	20	6	40	1.78
3873378--3873431	19	2.8	19	88	0	81	38	18	9	33	1.83
3873989--3874278	45	6.6	45	71	14	185	28	23	20	27	1.99
3874077--3874360	84	3.3	83	73	12	277	30	23	19	26	1.98
3874769--3874890	44	2.8	44	80	9	151	28	26	18	26	1.98
3874890--3875640	88	8.5	88	96	0	1378	19	25	28	26	1.99
3876964--3876996	14	2.3	15	89	5	50	27	33	12	27	1.92
3884161--3884220	19	3.2	19	97	0	111	41	15	8	35	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141