genome.fa.s1.2.7.7.80.10.50.1000.88.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  88  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28607887--28607948	23	2.7	23	78	14	65	8	14	0	77	0.98
28610552--28610578	13	2.1	13	100	0	54	77	0	14	7	0.97
28613667--28613698	14	2.3	14	100	0	64	21	12	15	50	1.77
28614900--28614939	20	2.0	20	86	13	57	47	5	7	40	1.54
28617523--28617580	22	2.6	22	78	5	55	39	1	6	51	1.39
28621225--28621253	1	29.0	1	100	0	58	100	0	0	0	0.00
28622867--28622909	18	2.5	17	79	20	54	58	0	0	41	0.98
28627418--28627447	16	1.9	15	93	6	51	46	3	6	43	1.46
28627418--28627458	16	2.6	16	85	11	50	43	2	9	43	1.50
28627786--28627830	22	2.0	22	91	0	72	15	24	22	37	1.93
28628358--28628525	17	9.5	18	76	11	134	45	11	14	27	1.79
28628369--28628525	35	4.5	34	81	10	149	45	10	14	29	1.79
28628539--28628594	29	1.9	29	92	0	94	53	14	17	14	1.73
28628741--28628794	28	1.9	28	88	0	81	40	7	7	44	1.60
28629048--28629109	8	8.0	8	76	7	56	1	19	0	79	0.82
28629049--28629093	10	4.4	10	77	5	54	0	17	0	82	0.68
28629054--28629086	13	2.6	13	90	4	50	0	21	0	78	0.75
28629055--28629112	25	2.5	24	83	10	75	1	20	0	77	0.86
28629389--28629429	10	3.7	11	79	20	50	0	19	0	80	0.71
28629378--28629432	13	4.6	12	76	19	53	1	18	0	80	0.81
28629378--28629431	23	2.4	22	87	9	74	1	18	0	79	0.82
28629388--28629431	22	2.0	23	90	4	72	0	20	0	79	0.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28629758--28629787	12	2.5	12	94	0	51	0	0	16	83	0.65
28630177--28630291	59	2.0	57	81	6	133	41	6	20	31	1.77
28630283--28630317	17	2.1	17	94	0	61	20	0	5	74	1.02
28630635--28631030	81	5.1	78	84	6	486	36	19	15	28	1.92
28641401--28641453	11	4.6	11	76	15	54	60	5	5	28	1.42
28643195--28643260	30	2.2	30	94	0	114	18	4	36	40	1.71
28643210--28643266	18	3.4	18	66	28	54	17	1	36	43	1.60
28644623--28644749	17	7.2	16	75	17	101	45	11	14	28	1.80
28644627--28644815	18	10.6	18	73	15	115	48	12	13	25	1.78
28644607--28644749	35	4.1	34	79	7	142	44	11	14	28	1.81
28644665--28644820	54	2.9	55	78	9	153	46	12	12	27	1.78
28645836--28645875	11	3.6	11	93	0	71	0	25	0	75	0.81
28645808--28645875	21	3.2	21	78	2	73	2	29	0	67	1.05
28646525--28646559	17	2.1	17	94	0	61	20	0	5	74	1.02
28647193--28647585	194	2.0	194	90	1	610	26	23	25	24	2.00
28651663--28651706	13	3.4	13	77	0	52	29	22	0	47	1.51
28651598--28651683	39	2.2	39	80	2	100	34	18	3	43	1.67
28653140--28653408	139	1.9	139	96	0	502	44	9	15	30	1.78
28655968--28656004	3	12.3	3	100	0	74	64	0	0	35	0.94
28656534--28656581	25	1.9	25	91	8	80	45	16	16	20	1.85
28657462--28657577	61	1.9	59	86	5	162	25	14	14	45	1.83
28657828--28657853	4	6.5	4	100	0	52	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28658303--28658328	4	6.5	4	100	0	52	53	0	0	46	1.00
28658571--28658629	31	1.9	31	89	0	91	50	8	15	25	1.71
28673401--28673438	19	2.0	19	100	0	76	47	15	10	26	1.78
28673430--28673460	14	2.2	14	94	0	53	41	16	6	35	1.74
28673646--28673677	14	2.3	14	94	0	55	25	12	15	46	1.81
28680849--28680899	25	2.0	26	88	3	77	60	0	3	35	1.15
28691286--28691310	4	6.2	4	100	0	50	0	24	0	76	0.80
28711307--28711332	5	5.2	5	100	0	52	42	19	19	19	1.90
28711999--28712035	9	4.1	9	92	0	65	29	10	13	45	1.77
28714412--28714478	33	2.0	33	100	0	134	44	11	17	25	1.83
28717133--28717187	15	3.7	15	80	0	65	43	29	3	23	1.71
28719236--28719324	37	2.4	38	96	1	162	16	7	24	50	1.72
28719313--28719405	42	2.2	42	96	0	168	12	4	24	58	1.53
28719342--28719405	14	4.6	14	67	21	53	14	4	25	56	1.57
28722901--28722935	18	1.9	18	88	0	52	40	14	34	11	1.82
28723006--28723108	39	2.6	39	100	0	206	35	2	13	47	1.58
28723027--28723089	20	3.2	20	70	20	69	38	3	15	42	1.63
28723008--28723108	17	5.2	19	69	21	84	35	1	13	48	1.54
28723631--28723663	8	4.1	8	100	0	66	63	0	12	24	1.28
28723734--28723781	25	1.9	25	100	0	96	39	4	8	47	1.53
28742125--28742154	15	2.1	15	93	6	53	60	6	0	33	1.23
28762505--28762545	19	2.0	21	90	9	68	12	26	19	41	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28762721--28762768	21	2.3	20	92	3	78	43	8	27	20	1.80
28769207--28769272	27	2.5	26	85	4	89	77	0	19	3	0.90
28770526--28770654	44	2.9	45	81	6	154	28	24	23	23	1.99
28770519--28770654	45	3.0	45	80	6	177	30	23	23	22	1.99
28770753--28771875	44	25.5	44	65	17	349	29	18	24	27	1.98
28770668--28771903	132	9.4	132	92	0	1999	29	18	24	26	1.98
28776929--28777058	40	3.2	41	77	7	133	32	20	21	25	1.98
28777213--28777271	15	4.0	15	86	4	75	18	0	33	47	1.49
28777153--28777254	22	4.8	21	70	11	64	24	0	29	45	1.60
28777213--28777319	29	3.8	29	74	8	94	18	0	35	45	1.50
28777166--28777318	14	10.7	14	73	9	103	21	0	32	45	1.57
28777208--28777319	7	15.7	7	78	3	80	19	0	33	46	1.50
28779348--28779391	23	1.9	22	82	17	54	38	22	0	38	1.55
28779444--28779529	45	1.9	45	92	0	145	33	25	15	25	1.95
28779535--28779720	51	3.7	50	77	7	205	31	27	17	23	1.97
28779533--28779717	101	1.8	102	87	3	275	31	27	17	23	1.97
28787633--28787761	47	2.7	45	77	7	132	26	13	10	49	1.74
28787740--28787782	21	2.0	21	90	0	68	25	6	16	51	1.69
28787792--28787940	77	1.9	77	86	2	210	22	10	13	53	1.70
28787869--28787958	47	1.9	47	90	0	144	24	8	13	53	1.68
28787938--28787979	21	2.0	21	90	0	66	28	4	19	47	1.69
28787891--28788027	68	2.0	68	94	0	238	27	8	13	50	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28789199--28789327	43	3.0	43	82	2	161	20	19	27	32	1.97
28789578--28789618	19	2.2	19	90	0	64	21	36	0	41	1.54
28795546--28795606	32	1.9	32	87	9	90	34	4	11	49	1.61
28797772--28797802	7	4.4	7	100	0	62	38	16	16	29	1.90
28798477--28798506	14	2.1	14	93	0	51	40	6	6	46	1.56
28799032--28799077	3	15.3	3	95	0	83	63	2	0	34	1.07
28799544--28799613	16	4.4	16	94	0	95	31	0	34	34	1.58
28799592--28799682	45	2.0	44	85	2	119	32	5	26	35	1.80
28799847--28799881	18	2.0	17	88	5	52	54	0	0	45	0.99
28805490--28805535	3	15.3	3	95	0	83	63	2	0	34	1.07
28806002--28806071	16	4.4	16	94	0	95	31	0	34	34	1.58
28806050--28806140	45	2.0	44	85	2	119	32	5	26	35	1.80
28806303--28806348	16	2.9	16	81	15	51	52	2	0	45	1.13
28806305--28806339	18	2.0	17	88	5	52	54	0	0	45	0.99
28806265--28806444	55	3.3	55	74	12	206	50	3	0	45	1.22
28806232--28806452	110	2.0	110	98	0	424	48	3	0	46	1.25
28806395--28806436	15	2.7	16	82	14	52	52	2	0	45	1.13
28806404--28806445	15	2.9	15	82	10	52	52	0	0	47	1.00
28809716--28809783	35	2.0	34	82	8	84	19	2	35	42	1.66
28810286--28810333	14	3.5	13	77	8	51	52	16	2	29	1.56
28816120--28816151	15	2.1	15	94	0	55	65	15	0	18	1.27
28816158--28816194	13	2.7	14	80	20	51	64	8	5	21	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28818199--28818250	18	2.9	18	75	11	61	28	1	7	61	1.34
28840660--28840875	44	4.9	44	87	1	299	25	25	21	28	1.99
28842079--28842108	5	5.8	5	96	4	51	16	0	3	80	0.85
28847746--28847770	2	12.5	2	100	0	50	48	0	0	52	1.00
28848145--28848259	37	3.1	37	91	0	176	33	6	25	34	1.83
28848145--28848272	37	3.6	35	88	4	125	31	8	25	34	1.86
28857555--28857606	27	2.0	26	85	11	70	19	0	9	71	1.13
28857684--28857722	6	6.3	6	82	5	51	79	2	15	2	0.95
28861344--28861468	64	2.0	64	86	0	178	19	18	26	36	1.94
28861511--28861556	24	1.9	24	86	0	65	17	21	21	39	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141