genome.fa.s1.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  15  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5027389--5027554	21	8.0	21	65	7	70	20	22	16	40	1.90
5027419--5027589	42	4.1	42	78	10	154	19	22	16	42	1.89
5031288--5031385	25	4.0	24	76	15	101	23	20	19	36	1.95
5033097--5033270	45	3.9	45	84	1	170	20	19	17	41	1.90
5033054--5033312	90	2.9	89	73	9	204	19	18	16	44	1.87
5033382--5033415	15	2.3	15	90	10	52	52	11	0	35	1.38
5034965--5035012	24	2.0	23	88	4	69	20	2	4	72	1.11
5039399--5039480	27	3.0	27	92	0	128	37	17	21	23	1.93
5039623--5039719	35	2.8	35	83	0	131	26	22	18	31	1.97
5040281--5040329	20	2.5	20	86	0	71	46	20	8	24	1.77
5041451--5041505	23	2.4	23	90	0	83	27	12	12	47	1.78
5044077--5044140	3	21.3	3	96	0	119	0	32	0	67	0.91
5052155--5052232	27	2.9	27	96	0	138	19	26	29	24	1.98
5052213--5052448	33	6.7	33	67	24	126	21	20	25	32	1.98
5052180--5052411	103	2.3	101	88	4	356	21	21	26	31	1.98
5052282--5052335	27	2.0	28	92	3	92	18	22	29	29	1.97
5052101--5052335	130	1.8	130	92	0	398	20	22	26	30	1.98
5059557--5059815	76	3.4	75	89	3	394	23	17	25	33	1.96
5059600--5059814	43	5.5	40	70	20	161	23	17	24	34	1.95
5059718--5059919	103	2.0	103	91	0	332	20	18	27	33	1.96
5059795--5059942	33	4.4	33	71	22	103	20	19	28	31	1.97
5065174--5065256	22	3.7	21	73	19	62	4	26	1	67	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5066819--5067075	127	2.0	128	92	0	426	23	10	19	46	1.80
5067322--5067378	30	1.9	30	92	0	96	31	22	17	28	1.97
5069780--5069827	13	3.8	13	77	5	62	43	0	2	54	1.12
5070811--5070854	22	2.0	23	86	4	63	40	6	9	43	1.63
5080015--5080040	13	2.0	13	100	0	52	46	23	0	30	1.53
5080282--5080307	5	5.2	5	100	0	52	80	0	0	19	0.71
5090023--5090059	17	2.1	18	90	5	58	10	35	35	18	1.86
5091619--5091688	16	4.4	16	96	0	104	31	0	35	32	1.58
5091667--5091776	45	2.6	43	80	9	129	33	5	29	31	1.80
5091902--5091943	15	2.7	16	82	14	52	52	2	0	45	1.13
5091911--5091952	15	2.9	15	82	10	52	52	0	0	47	1.00
5092118--5092165	26	1.9	25	84	16	64	52	2	0	45	1.12
5092192--5092236	22	2.0	22	100	0	90	42	13	0	44	1.43
5095175--5095214	19	2.1	19	95	0	71	40	30	0	30	1.57
5095897--5095999	41	2.5	40	85	3	143	14	31	18	35	1.91
5095897--5096055	20	7.9	19	66	15	72	14	31	18	35	1.91
5102438--5102471	12	2.7	13	95	4	61	14	0	26	58	1.36
5104102--5104152	9	5.6	9	77	9	50	35	1	41	21	1.65
5105776--5105807	3	10.7	3	100	0	64	34	0	34	31	1.58
5106413--5106443	3	10.3	3	100	0	62	67	0	0	32	0.91
5107304--5107337	6	5.7	6	89	0	50	0	61	17	20	1.34
5109676--5109709	3	11.3	3	100	0	68	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5121093--5121215	46	2.6	45	81	6	113	26	18	18	35	1.94
5121968--5122045	31	2.6	30	83	6	86	43	16	10	29	1.81
5124215--5124259	18	2.5	18	78	7	56	42	17	2	37	1.62
5127990--5128054	20	3.3	20	66	12	62	26	18	36	18	1.94
5127968--5128106	39	3.6	39	89	0	188	34	20	28	16	1.94
5127959--5128070	19	5.8	20	66	13	63	34	18	31	15	1.92
5134900--5134943	22	2.0	22	86	8	63	38	2	4	54	1.33
5135572--5135681	54	2.0	54	98	0	211	32	22	12	31	1.92
5135581--5135665	26	3.2	26	68	12	82	36	22	12	28	1.91
5145441--5145496	28	2.0	28	89	0	85	30	25	23	21	1.99
5145871--5146007	27	5.1	27	85	0	170	22	13	18	44	1.86
5145871--5146007	54	2.6	53	92	2	222	22	13	18	44	1.86
5146088--5147228	570	2.0	570	93	1	1957	41	19	18	20	1.91
5149374--5149417	22	2.0	22	86	8	63	38	2	4	54	1.33
5156112--5156136	13	1.9	13	100	0	50	16	44	8	32	1.76
5158544--5158602	21	2.7	22	76	10	59	40	13	6	38	1.71
5163339--5163401	29	2.1	30	88	8	94	36	19	4	39	1.72
5163349--5163412	29	2.2	29	86	5	85	31	25	3	40	1.71
5164189--5164297	26	4.2	27	82	6	118	26	13	22	36	1.92
5169715--5169782	30	2.2	31	84	2	84	45	5	20	27	1.74
5174162--5174284	50	2.5	50	84	0	165	27	24	26	21	1.99
5174557--5174595	20	2.0	20	90	10	62	56	5	23	15	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5197751--5197815	29	2.6	24	75	25	71	16	13	15	53	1.73
5198143--5198182	21	1.9	21	100	0	80	32	27	10	30	1.89
5201601--5201658	29	2.0	29	83	6	73	37	5	3	53	1.40
5202903--5202962	18	3.5	17	71	24	54	40	8	5	46	1.56
5204096--5204145	22	2.3	22	92	0	82	28	32	0	40	1.57
5204117--5204175	30	2.0	30	93	0	100	28	33	0	37	1.58
5205244--5205275	7	4.6	7	96	0	55	25	0	12	62	1.30
5206485--5206974	29	16.7	29	95	2	863	42	26	0	30	1.56
5206997--5207121	56	2.2	56	92	0	205	36	13	7	43	1.72
5209945--5210221	123	2.3	123	92	1	459	33	21	14	29	1.93
5211550--5211693	43	3.3	43	85	0	180	34	24	16	24	1.95
5211636--5211750	57	2.0	57	87	0	167	36	26	13	22	1.92
5211715--5211879	43	3.8	43	79	3	188	27	23	17	31	1.97
5214905--5215015	42	2.6	43	82	4	136	25	17	26	31	1.97
5214905--5215022	43	2.8	42	83	3	130	24	16	26	32	1.96
5215484--5215512	2	14.5	2	100	0	58	48	0	0	51	1.00
5218018--5218180	7	23.6	7	71	16	90	45	30	1	23	1.61
5218002--5218094	43	2.2	43	81	12	111	39	33	3	23	1.71
5218343--5218389	7	6.7	7	90	0	67	48	34	0	17	1.47
5218343--5218401	14	4.2	14	80	8	66	49	32	0	18	1.48
5218426--5218486	14	4.3	14	78	2	50	52	26	1	19	1.55
5218426--5218480	28	1.9	29	85	3	76	52	25	1	20	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5218779--5218937	72	2.2	71	93	1	273	28	28	13	29	1.95
5218913--5219062	81	1.9	80	88	1	228	27	22	18	32	1.97
5218912--5219071	40	4.0	40	78	4	169	26	23	18	31	1.97
5221744--5221945	46	4.3	48	67	13	116	27	17	19	36	1.94
5221740--5221968	94	2.4	94	83	5	277	28	17	19	35	1.94
5224551--5224600	24	2.1	24	96	0	91	28	28	10	34	1.89
5236733--5236805	27	2.8	25	72	22	69	17	24	23	34	1.96
5236794--5236848	24	2.3	24	87	6	85	16	23	23	36	1.94
5236880--5236935	24	2.3	24	82	11	62	19	26	17	35	1.94
5237237--5237453	107	2.0	107	97	0	407	29	11	17	41	1.84
5240357--5240398	20	2.0	22	86	9	61	23	2	2	71	1.10
5241126--5241181	21	2.7	20	77	17	60	12	32	32	23	1.92
5245505--5245538	3	11.0	3	87	6	50	35	0	61	2	1.11
5248116--5248156	16	2.6	16	80	0	55	39	7	21	31	1.81
5251369--5251461	44	2.1	44	84	6	116	33	4	27	34	1.77
5254207--5254275	34	2.0	34	97	0	129	49	13	8	28	1.71
5257709--5257839	67	2.0	67	81	3	156	32	19	25	22	1.97
5260350--5260384	16	2.2	16	100	0	70	11	11	11	65	1.47
5268008--5268284	27	10.3	27	82	4	267	32	24	15	27	1.95
5267977--5268284	81	3.8	81	79	2	291	34	24	15	25	1.95
5271982--5272058	36	2.1	36	97	0	145	37	16	2	42	1.62
5272144--5272191	18	2.6	18	78	18	53	56	0	6	37	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5278873--5279098	27	8.4	27	86	1	310	18	18	21	42	1.89
5279889--5279948	23	2.6	23	87	10	79	41	16	15	26	1.88
5279883--5280020	70	2.0	71	85	7	192	41	20	13	24	1.89
5279959--5280010	23	2.3	23	90	6	79	46	19	13	21	1.84
5280753--5280878	28	4.5	28	89	4	173	29	28	11	30	1.92
5280753--5280878	56	2.2	56	91	2	200	29	28	11	30	1.92
5288743--5288798	25	2.3	24	78	3	58	46	0	3	50	1.19
5288802--5288840	16	2.4	16	86	0	51	46	2	5	46	1.38
5289561--5289647	44	2.0	44	84	8	115	45	17	9	27	1.78
5300003--5300147	49	2.9	49	84	2	164	26	15	28	30	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141