genome.fa.s1.2.7.7.80.10.50.1000.78.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  78  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25572742--25572807	28	2.3	27	82	10	78	33	0	3	63	1.10
25574157--25574680	259	2.0	260	99	0	1032	47	5	9	38	1.58
25574631--25574686	22	2.5	24	77	8	64	57	3	5	33	1.39
25575208--25575245	14	2.7	14	87	0	58	18	18	7	55	1.66
25575207--25575258	14	3.7	14	81	0	50	23	15	5	55	1.61
25582611--25582640	16	1.9	15	93	6	51	46	16	10	26	1.78
25589221--25589266	20	2.3	19	85	10	65	41	19	26	13	1.88
25589229--25589268	20	2.0	20	95	0	71	45	17	25	12	1.83
25593617--25593669	10	5.2	10	75	20	56	77	0	1	20	0.87
25600107--25600290	51	3.6	51	81	4	194	30	27	14	27	1.95
25608408--25608441	14	2.2	16	90	10	54	79	0	20	0	0.73
25608409--25608441	15	2.1	16	88	5	50	81	0	18	0	0.68
25617175--25617310	51	2.7	50	82	1	155	30	26	16	27	1.97
25621296--25621325	15	1.9	16	93	6	53	36	0	46	16	1.47
25621987--25622033	23	2.0	23	100	0	94	21	17	14	46	1.83
25625810--25625846	17	2.2	17	100	0	74	27	10	24	37	1.88
25633314--25633364	25	2.0	25	85	14	70	33	15	1	49	1.56
25633617--25633671	25	2.2	26	90	3	85	30	12	25	30	1.93
25633626--25633684	25	2.4	25	88	0	82	28	15	28	27	1.96
25633673--25633912	25	9.7	25	68	11	93	37	21	23	18	1.94
25634734--25634778	19	2.4	18	85	3	54	0	24	2	73	0.95
25634746--25634783	14	2.7	14	80	15	51	2	18	2	76	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25634752--25634799	21	2.5	20	83	10	55	4	16	6	72	1.20
25634746--25634816	35	2.1	33	82	10	81	7	14	4	74	1.18
25634829--25634877	18	2.5	19	78	15	55	48	4	0	46	1.20
25654985--25655140	44	3.5	43	81	7	163	30	21	25	23	1.99
25667576--25667630	27	2.0	27	92	0	92	29	0	54	16	1.42
25670016--25670062	22	2.2	21	84	3	58	34	2	0	63	1.06
25670016--25670068	21	2.5	22	81	3	63	33	1	1	62	1.17
25671460--25671537	40	2.0	40	86	0	111	23	29	26	20	1.99
25671709--25671756	11	4.2	12	75	19	50	27	29	2	41	1.67
25692580--25692632	25	2.1	25	85	0	70	13	13	15	58	1.64
25693291--25693342	21	2.4	21	87	9	70	73	3	1	21	1.10
25693444--25693482	20	2.0	19	85	14	53	20	2	0	76	0.90
25694476--25694694	109	2.0	110	99	0	431	31	31	6	29	1.84
25694735--25694777	12	3.8	12	78	12	54	44	0	0	55	0.99
25696886--25697187	23	13.7	23	75	19	281	49	25	0	24	1.50
25696906--25697164	89	3.0	89	86	10	374	49	26	0	23	1.50
25696891--25697187	112	2.7	110	84	8	390	49	25	0	24	1.50
25696988--25697080	44	2.3	38	75	22	107	49	27	0	22	1.50
25696906--25697146	45	5.4	44	82	12	280	49	26	0	23	1.50
25697122--25697164	18	2.4	18	92	0	68	55	18	0	25	1.42
25697282--25697311	15	2.0	15	100	0	60	53	26	0	20	1.46
25697296--25697780	23	21.7	23	77	12	474	48	25	1	24	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25697289--25697780	113	4.4	107	80	9	447	47	26	1	24	1.58
25697299--25697780	181	2.7	173	83	7	587	47	25	1	25	1.58
25697294--25697799	158	3.2	155	79	12	509	48	26	0	24	1.58
25697997--25698215	116	1.9	115	93	5	379	38	7	7	45	1.62
25701071--25701439	123	3.0	124	91	1	598	31	22	15	30	1.95
25702019--25702167	74	2.0	75	98	1	291	40	9	6	42	1.63
25703094--25703208	49	2.3	49	83	0	131	24	15	28	31	1.96
25706680--25706724	21	2.2	21	84	7	58	46	22	22	8	1.79
25706752--25706833	42	2.0	42	90	4	130	46	18	19	15	1.84
25710457--25711475	511	2.0	508	97	0	1905	38	7	17	37	1.78
25717797--25717851	23	2.3	23	96	3	101	40	21	21	16	1.91
25719161--25719206	22	2.1	22	87	0	65	39	19	19	21	1.93
25719747--25719906	78	2.1	78	96	0	293	25	4	28	42	1.74
25721109--25721397	144	2.0	144	95	0	524	36	17	17	28	1.92
25723374--25723485	44	2.5	44	81	5	120	30	19	19	30	1.97
25725715--25725790	30	2.6	29	80	10	75	11	10	10	67	1.43
25730785--25730832	3	16.0	3	100	0	96	66	0	0	33	0.92
25732072--25732099	4	7.0	4	100	0	56	25	0	0	75	0.81
25737497--25737522	5	5.2	5	100	0	52	19	0	0	80	0.71
25739423--25739575	42	3.6	42	80	3	130	43	18	21	16	1.88
25739509--25739582	21	3.5	21	75	0	76	45	16	18	18	1.85
25750938--25751007	22	3.2	21	68	8	59	34	5	20	40	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25752110--25752267	85	1.9	85	84	5	212	29	17	15	37	1.91
25753820--25754079	75	3.6	75	74	19	216	41	5	8	45	1.57
25758788--25758819	10	3.2	10	90	0	55	0	0	40	59	0.97
25764636--25764666	4	7.8	4	92	0	53	0	0	22	77	0.77
25768967--25769002	16	2.2	16	95	0	63	52	13	5	27	1.63
25769085--25769146	10	6.3	10	74	9	56	25	1	3	69	1.13
25769085--25769146	20	3.1	20	84	6	81	25	1	3	69	1.13
25775845--25775874	12	2.5	12	94	0	51	0	20	50	30	1.49
25785931--25785968	19	2.0	19	85	10	51	52	7	21	18	1.70
25790104--25790158	27	2.0	27	96	0	101	29	12	14	43	1.82
25791944--25791986	15	2.9	15	85	0	59	41	9	16	32	1.80
25791945--25791994	15	3.4	14	81	8	55	44	10	18	28	1.81
25793646--25793704	30	2.0	30	86	0	82	37	8	25	28	1.85
25794162--25794351	23	8.3	23	84	0	236	23	21	24	31	1.98
25794161--25794351	69	2.8	69	90	0	274	23	20	24	31	1.98
25800953--25800979	8	3.4	8	100	0	54	40	11	0	48	1.39
25802443--25802480	19	2.0	19	94	0	67	23	15	0	60	1.35
25808962--25808995	1	34.0	1	100	0	68	0	0	0	100	0.00
25815764--25815805	14	3.0	14	76	13	50	38	0	7	54	1.28
25815846--25815873	13	2.2	13	100	0	56	46	7	0	46	1.30
25816263--25816317	22	2.5	23	82	11	62	32	7	0	60	1.24
25816340--25816379	13	3.2	13	89	3	55	35	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25816335--25816384	19	2.4	22	90	9	79	32	0	0	68	0.90
25821024--25821132	38	2.9	38	79	5	123	36	29	18	15	1.92
25826634--25826712	39	2.0	39	100	0	158	25	2	25	46	1.65
25836373--25836518	38	3.7	38	73	13	114	36	32	17	13	1.89
25836434--25836496	22	2.9	22	82	0	81	42	31	9	15	1.79
25836434--25836507	22	3.4	22	77	7	78	41	32	12	13	1.81
25837364--25837417	22	2.4	22	81	9	65	38	18	1	40	1.61
25838030--25838058	12	2.3	13	94	5	51	37	6	27	27	1.82
25841452--25841916	232	2.0	233	99	0	923	43	10	15	30	1.81
25842619--25842650	16	2.0	16	93	0	55	46	0	3	50	1.17
25847909--25847940	15	2.1	15	94	0	55	15	6	9	68	1.36
25856420--25856457	20	1.9	20	88	0	58	55	2	0	42	1.14
25856420--25856462	20	2.2	20	83	4	52	51	4	0	44	1.22
25863383--25863450	21	3.2	21	67	22	61	39	1	7	51	1.39
25864132--25864213	40	2.0	40	86	4	112	37	14	13	34	1.85
25865607--25865836	72	3.2	72	98	1	433	45	15	11	27	1.80
25865657--25865873	34	6.1	34	65	17	102	45	14	11	29	1.79
25867154--25867178	12	2.1	12	100	0	50	8	44	32	16	1.76
25876085--25876337	122	2.1	123	98	1	490	58	9	5	26	1.53
25876305--25876359	24	2.3	24	84	3	67	63	1	3	30	1.22
25876334--25876377	17	2.5	17	82	13	54	59	2	2	36	1.23
25881622--25881651	6	5.0	6	100	0	60	0	16	66	16	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25881733--25881808	14	5.4	13	80	9	62	30	1	3	64	1.20
25881753--25881800	7	6.9	7	86	6	62	35	0	6	58	1.23
25881732--25881805	7	10.8	6	78	17	51	31	1	4	63	1.21
25881752--25881800	21	2.3	21	90	10	82	34	0	6	59	1.22
25881890--25881937	7	6.9	7	86	6	62	35	0	6	58	1.23
25881869--25881942	7	10.8	6	78	17	51	31	1	4	63	1.21
25881889--25881937	21	2.3	21	90	10	82	34	0	6	59	1.22
25881707--25881983	137	2.0	138	98	1	538	33	2	5	58	1.34
25883657--25883773	58	2.0	59	98	1	227	35	28	8	27	1.86
25885370--25885408	19	2.0	21	85	10	55	69	5	10	15	1.34

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141