genome.fa.s1.2.7.7.80.10.50.1000.121.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  121  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38483002--38483050	20	2.5	20	82	0	53	16	8	4	71	1.26
38484425--38484464	19	2.1	19	86	9	55	35	0	7	57	1.27
38484425--38484464	18	2.1	20	86	9	57	35	0	7	57	1.27
38484429--38484477	18	2.6	18	80	6	53	40	4	4	51	1.40
38485292--38485344	23	2.3	23	96	0	97	39	39	3	16	1.67
38498839--38498874	17	2.1	17	89	0	54	66	16	0	16	1.25
38500446--38500616	51	3.4	50	90	2	270	31	15	23	29	1.95
38516647--38516693	20	2.3	20	88	0	67	70	2	10	17	1.26
38534968--38535005	3	12.7	3	91	0	58	68	28	0	2	1.03
38538348--38538398	26	1.9	26	84	4	66	49	0	3	47	1.20
38539519--38539562	20	2.2	20	88	8	63	68	0	31	0	0.90
38544057--38544083	14	1.9	14	100	0	54	40	22	14	22	1.90
38567743--38567778	18	1.9	19	88	5	56	41	2	2	52	1.30
38568975--38569038	27	2.3	27	81	10	76	45	3	1	50	1.27
38571185--38571232	19	2.6	18	76	6	51	33	0	2	64	1.05
38572894--38572931	4	9.5	4	94	0	67	26	2	47	23	1.65
38577357--38577403	24	2.0	24	95	0	85	36	6	0	57	1.24
38577452--38577536	27	3.2	27	85	6	104	31	23	25	18	1.97
38577586--38577652	19	3.6	19	81	4	91	35	10	0	53	1.35
38577591--38577661	37	1.9	37	94	0	124	40	11	0	47	1.39
38580980--38581231	125	2.0	123	92	1	414	35	13	17	33	1.89
38587693--38587718	13	2.0	13	100	0	52	15	15	15	53	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38589152--38589183	2	16.0	2	93	0	55	46	0	0	53	1.00
38598958--38598987	2	14.5	2	93	6	51	50	0	3	46	1.18
38605027--38605430	201	2.0	202	99	0	801	48	5	8	37	1.58
38606162--38606209	20	2.5	20	76	10	55	56	0	2	41	1.11
38606706--38606743	18	2.1	19	85	5	51	42	0	2	55	1.14
38608660--38608728	30	2.3	30	94	0	120	44	5	23	26	1.75
38608682--38608728	15	3.1	16	69	12	53	42	6	25	25	1.78
38612839--38612877	20	2.0	19	85	5	51	41	0	7	51	1.31
38620375--38620414	16	2.6	16	84	4	55	40	5	10	45	1.60
38621502--38621571	25	2.7	26	73	8	72	25	17	28	28	1.97
38623473--38623532	16	3.7	16	76	12	59	45	3	0	51	1.17
38624793--38624818	5	5.2	5	100	0	52	38	19	19	23	1.93
38627658--38627695	19	2.0	20	94	5	69	60	10	13	15	1.59
38629290--38629348	29	2.0	29	93	0	100	49	0	11	38	1.40
38631245--38631303	29	2.0	29	93	0	100	49	0	11	38	1.40
38631390--38631422	9	3.7	9	91	0	57	30	18	12	39	1.87
38633330--38633355	11	2.4	11	100	0	52	38	7	0	53	1.30
38633531--38634622	544	2.0	544	97	0	2058	35	21	14	28	1.93
38637910--38637976	29	2.3	29	92	0	107	23	14	11	49	1.77
38640073--38640113	19	2.3	18	88	12	66	51	0	4	43	1.23
38640785--38640844	30	2.0	30	83	3	75	35	1	3	60	1.23
38644362--38644544	9	19.2	9	70	16	86	61	3	4	30	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38644363--38644446	10	8.7	10	74	11	59	61	2	1	34	1.16
38644363--38644444	29	2.9	29	80	7	96	62	2	1	34	1.16
38644412--38644544	19	6.8	19	71	17	62	62	3	5	29	1.32
38644361--38644452	38	2.4	38	79	15	100	63	3	1	32	1.18
38644552--38644595	22	2.0	22	100	0	88	40	4	9	45	1.56
38644749--38644859	10	12.1	9	66	17	59	34	2	0	62	1.16
38644749--38644848	19	5.3	18	77	11	85	35	3	1	61	1.18
38645019--38645048	2	15.0	2	100	0	60	50	0	50	0	1.00
38645055--38645222	89	1.9	88	84	6	223	35	9	16	38	1.81
38646864--38647075	111	1.9	111	84	3	284	30	12	32	24	1.92
38650649--38650699	15	3.4	15	72	20	52	62	0	0	37	0.95
38650649--38650710	30	2.0	31	93	3	108	58	1	0	40	1.08
38651757--38651782	4	6.5	4	100	0	52	23	0	26	50	1.50
38654758--38654786	12	2.3	13	94	5	51	82	0	13	3	0.79
38655279--38655502	43	5.2	43	85	4	290	26	22	19	32	1.97
38659521--38659546	12	2.2	12	100	0	52	30	26	7	34	1.85
38661266--38661509	9	27.0	9	70	14	139	34	0	18	45	1.56
38661268--38661520	56	4.5	56	87	7	325	34	0	18	45	1.55
38661395--38661480	24	3.4	24	64	25	59	36	0	16	47	1.47
38661318--38661520	109	1.9	108	90	1	325	34	0	18	45	1.54
38662794--38662841	20	2.4	20	82	0	60	14	4	4	77	1.08
38663004--38663079	21	3.4	22	70	22	61	36	2	6	53	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38664349--38664569	9	24.0	9	76	11	189	35	0	19	44	1.54
38664342--38664560	56	3.9	56	95	0	384	36	0	18	44	1.54
38664983--38665048	33	2.0	33	100	0	132	33	6	18	42	1.75
38665705--38665736	13	2.5	13	95	5	57	46	34	6	12	1.67
38666562--38666602	20	2.0	20	95	0	73	29	2	43	24	1.67
38666986--38667074	40	2.2	38	76	9	97	40	20	14	24	1.90
38667122--38667453	41	8.1	41	92	1	533	18	24	27	29	1.98
38668858--38669186	43	7.7	43	84	3	380	19	16	30	33	1.94
38668858--38669186	129	2.6	129	85	3	432	19	16	30	33	1.94
38669896--38669960	28	2.3	28	81	5	69	50	29	1	18	1.56
38669972--38670060	7	12.9	7	73	11	58	46	30	0	23	1.53
38669984--38670043	20	3.0	20	72	18	61	45	30	0	25	1.54
38669972--38670060	14	6.4	14	76	7	83	46	30	0	23	1.53
38670454--38670544	40	2.3	38	83	7	103	17	21	21	38	1.93
38672799--38672843	23	1.9	24	86	13	67	44	33	6	15	1.73
38673134--38673197	32	2.0	32	100	0	128	28	9	21	40	1.84
38673905--38673930	13	2.0	13	100	0	52	30	0	0	69	0.89
38673969--38674006	2	19.0	2	94	0	67	50	2	0	47	1.15
38679928--38680338	204	2.0	205	99	0	815	40	11	12	35	1.79
38680309--38680351	19	2.3	19	84	4	61	60	4	0	34	1.17
38680308--38680358	19	2.6	19	81	9	59	60	7	0	31	1.25
38688199--38688341	15	9.5	15	73	0	70	14	58	8	18	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38688205--38688330	30	4.2	30	73	4	101	12	57	9	20	1.63
38688193--38688345	45	3.4	45	78	4	175	15	57	9	18	1.63
38688512--38688537	6	4.3	6	100	0	52	34	0	15	50	1.45
38706508--38706567	27	2.4	24	81	10	59	33	26	0	40	1.57
38707020--38707057	14	2.4	17	87	12	55	52	0	0	47	1.00
38707037--38707080	12	3.7	11	80	14	52	45	2	0	52	1.13
38707032--38707094	24	2.7	23	78	9	65	50	1	0	47	1.10
38707049--38707097	20	2.5	20	76	6	55	53	2	0	44	1.12
38712211--38712262	16	3.4	16	69	15	56	55	9	0	34	1.32
38718888--38718940	6	8.5	6	82	14	63	79	1	18	0	0.83
38720212--38721029	408	2.0	408	99	0	1620	30	11	18	39	1.86
38722675--38722703	14	2.1	14	100	0	58	24	20	13	41	1.89
38726738--38726903	66	2.5	66	82	3	183	31	24	14	30	1.94
38729438--38729477	20	2.0	20	86	13	57	40	7	2	50	1.44
38742825--38742862	2	19.0	2	100	0	76	50	0	0	50	1.00
38743879--38744054	45	4.0	45	83	1	221	32	24	15	27	1.95
38744066--38744166	55	1.9	53	82	8	125	26	27	15	29	1.96
38745144--38745182	18	2.2	17	86	13	53	46	20	0	33	1.51
38747117--38747151	15	2.3	15	90	9	54	62	2	11	22	1.41
38751335--38751374	11	3.6	11	93	0	62	20	27	7	45	1.78
38753011--38753383	124	3.0	124	91	0	593	32	21	16	29	1.95
38757219--38757252	8	4.5	8	85	14	54	23	50	14	11	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38757201--38757252	22	2.4	22	87	6	70	23	48	11	17	1.79
38757534--38758520	76	13.0	76	99	0	1965	31	3	9	55	1.50
38771152--38771191	20	2.0	20	90	0	62	27	10	12	50	1.72
38771137--38771203	34	1.9	35	90	3	109	31	8	13	46	1.74
38771131--38771207	14	5.0	15	71	20	52	33	9	14	42	1.77
38771807--38771924	60	2.0	61	86	1	166	38	14	8	38	1.76
38771954--38771978	6	4.2	6	100	0	50	32	0	0	68	0.90
38774996--38775037	21	2.0	21	82	17	52	35	4	28	30	1.78
38775427--38775494	32	2.1	32	84	10	86	41	22	11	25	1.87
38791693--38792171	239	2.0	239	97	0	906	38	18	20	23	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141