genome.fa.s1.2.7.7.80.10.50.1000.139.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  139  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45282826--45282860	18	1.9	18	88	0	52	25	25	0	48	1.51
45285499--45285534	18	2.0	18	94	0	63	50	11	13	25	1.75
45287049--45287095	21	2.2	21	88	0	67	36	29	2	31	1.70
45287049--45287086	7	5.4	7	96	0	67	39	31	0	28	1.57
45287995--45288029	16	2.1	18	89	10	56	65	0	0	34	0.93
45297700--45297747	10	4.9	10	76	2	53	66	2	6	25	1.26
45297770--45297805	15	2.5	14	86	8	54	44	8	0	47	1.33
45298369--45298416	16	2.9	18	82	14	59	22	2	0	75	0.91
45299156--45299186	3	10.3	3	100	0	62	64	35	0	0	0.94
45299541--45299600	22	2.8	21	84	5	66	16	10	48	25	1.77
45303261--45303296	15	2.5	14	86	8	54	44	8	0	47	1.33
45305551--45305635	9	9.4	9	81	0	107	25	9	21	43	1.82
45305551--45305635	27	3.1	27	86	0	125	25	9	21	43	1.82
45311945--45314035	184	11.4	184	99	0	4173	48	19	9	21	1.77
45314232--45314264	16	2.1	16	94	0	57	45	0	15	39	1.46
45314955--45315015	20	3.3	20	69	21	69	60	0	31	8	1.26
45327889--45328047	63	2.5	63	79	8	164	26	27	20	25	1.99
45331372--45331409	20	2.0	20	85	15	53	57	0	7	34	1.28
45331372--45331409	19	1.9	19	85	15	51	57	0	7	34	1.28
45332623--45332745	20	6.2	20	72	13	103	13	30	18	37	1.90
45342098--45342133	19	1.9	18	88	5	54	22	27	25	25	2.00
45344812--45344882	26	2.7	27	84	4	83	42	4	18	35	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45349110--45349309	95	2.1	93	81	9	228	21	23	18	37	1.94
45351661--45351708	16	3.2	16	76	23	52	39	0	8	52	1.32
45356747--45356784	16	2.3	16	90	4	58	42	2	0	55	1.14
45357568--45358256	343	2.0	344	99	0	1362	41	10	9	38	1.72
45359112--45359169	23	2.5	22	75	10	62	48	1	8	41	1.44
45363024--45363062	17	2.3	17	100	0	78	25	35	20	17	1.95
45366020--45366048	13	2.1	14	93	6	51	62	10	6	20	1.50
45366507--45366681	28	6.3	28	93	2	282	41	11	22	24	1.87
45377068--45377239	26	6.5	26	80	5	166	28	22	9	39	1.86
45377108--45377244	54	2.6	54	82	4	163	27	18	9	43	1.81
45379966--45380035	33	2.1	35	79	15	85	41	1	4	52	1.30
45382517--45382559	17	2.6	16	78	10	50	20	6	18	53	1.67
45384599--45384628	15	2.0	15	100	0	60	40	13	20	26	1.89
45384912--45384940	13	2.1	14	93	6	51	34	6	6	51	1.55
45426428--45426526	45	2.2	45	100	0	198	14	20	29	36	1.91
45428931--45428957	5	5.4	5	100	0	54	59	0	0	40	0.98
45430525--45430557	14	2.4	14	100	0	66	45	18	0	36	1.49
45438158--45438333	25	7.4	25	69	13	111	43	20	18	18	1.89
45438158--45438343	47	4.0	47	84	4	250	44	19	17	18	1.88
45438182--45438308	22	5.5	21	68	18	67	44	18	18	18	1.88
45438317--45438364	22	2.1	23	88	3	71	54	20	14	10	1.70
45438127--45438354	94	2.4	94	81	5	280	45	20	17	16	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45443284--45443345	29	2.2	29	88	8	92	54	0	25	19	1.44
45445090--45445144	27	2.1	26	86	3	74	40	1	0	58	1.09
45446104--45446141	13	2.7	14	92	8	60	84	13	0	2	0.73
45446104--45446147	14	3.1	14	81	12	54	84	11	2	2	0.81
45446104--45446141	7	5.4	7	90	9	60	84	13	0	2	0.73
45447872--45447910	17	2.3	17	86	0	51	43	7	5	43	1.55
45458567--45458937	94	3.9	94	81	4	381	34	18	20	26	1.96
45458572--45458937	188	1.9	189	80	6	429	33	18	21	27	1.96
45464966--45465472	274	1.8	275	85	6	724	30	13	21	35	1.92
45467500--45468063	284	2.0	284	98	0	1094	28	17	17	37	1.92
45473665--45473797	71	1.9	71	81	6	162	27	15	10	46	1.78
45474019--45474146	56	2.3	55	85	6	159	29	14	7	48	1.70
45474007--45474190	57	3.2	56	81	6	194	30	13	7	48	1.69
45479898--45479940	21	2.2	20	87	8	61	23	23	32	20	1.98
45479904--45479953	21	2.4	21	89	0	73	18	20	34	28	1.95
45480786--45480819	5	6.8	5	100	0	68	82	0	0	17	0.67
45483415--45483455	15	2.5	17	80	11	50	43	2	2	51	1.28
45501692--45501728	19	2.0	19	89	5	58	40	16	2	40	1.62
45506389--45506435	21	2.2	21	96	0	85	23	36	17	23	1.95
45517395--45517437	21	2.1	20	86	4	59	55	0	0	44	0.99
45517404--45517437	11	3.2	11	87	8	52	52	0	0	47	1.00
45517848--45517906	9	6.4	9	75	11	57	35	1	1	61	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45520857--45520895	15	2.5	16	87	8	62	5	38	0	56	1.22
45521201--45521243	15	2.8	16	75	7	52	37	23	6	32	1.82
45523593--45523997	197	2.0	198	98	0	785	31	12	12	43	1.80
45535142--45535181	14	2.8	14	92	3	62	40	0	10	50	1.36
45552253--45552340	28	3.2	27	80	13	83	28	21	20	29	1.98
45552272--45552340	28	2.5	28	86	9	88	28	23	18	28	1.98
45552302--45552474	57	3.1	57	81	5	192	28	22	16	31	1.96
45552605--45552763	53	3.0	53	82	1	185	28	22	12	37	1.90
45555667--45555697	4	7.8	4	100	0	62	0	22	0	77	0.77
45557584--45557625	11	3.6	11	81	12	57	40	0	2	57	1.12
45559795--45559834	18	2.3	18	86	4	64	45	12	12	30	1.79
45559942--45560001	23	2.6	23	94	0	102	30	30	15	25	1.95
45563613--45563649	13	2.9	13	88	4	58	16	0	0	83	0.64
45563613--45563651	8	4.6	8	90	9	60	15	0	0	84	0.62
45563781--45563843	16	3.9	16	85	6	83	31	1	19	47	1.59
45563897--45563951	16	3.4	16	87	0	74	36	14	16	32	1.89
45566172--45566227	25	2.2	25	81	12	69	41	1	0	57	1.09
45566422--45566472	24	2.1	25	82	10	61	68	1	13	15	1.30
45569593--45569617	13	1.9	13	100	0	50	24	8	28	40	1.83
45570271--45570401	64	2.0	64	94	0	226	42	16	15	25	1.87
45574220--45574269	17	2.8	18	71	14	50	36	32	20	12	1.89
45583521--45583560	20	2.0	20	85	9	55	22	5	12	60	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45583748--45583876	20	6.3	20	73	10	82	20	18	8	52	1.71
45583771--45583877	41	2.6	39	80	11	110	20	15	7	56	1.64
45584115--45584153	20	2.0	20	90	10	62	28	15	2	53	1.55
45584176--45584209	18	1.9	17	88	5	50	29	0	0	70	0.87
45584307--45584357	21	2.5	20	81	9	57	41	7	0	50	1.31
45584732--45584921	20	9.5	20	66	22	87	55	9	15	19	1.67
45585240--45585296	20	2.8	20	81	0	78	61	8	12	17	1.55
45585205--45585296	40	2.3	40	83	9	107	58	8	15	17	1.61
45585337--45585423	20	4.3	21	76	12	76	55	5	18	20	1.63
45587544--45587600	21	2.8	20	84	7	62	28	5	1	64	1.25
45587549--45587633	25	3.6	24	78	9	86	30	7	3	58	1.41
45587712--45587840	39	3.2	39	69	18	129	30	10	6	52	1.61
45587676--45587847	81	2.1	82	96	2	321	31	9	5	53	1.56
45587676--45587800	42	3.1	41	66	20	109	32	8	6	53	1.55
45587978--45588024	24	2.0	24	82	0	58	27	4	8	59	1.45
45589743--45589865	38	3.2	38	95	0	210	35	21	9	33	1.86
45591458--45591509	15	3.3	16	86	10	72	32	19	7	40	1.80
45593874--45593952	36	2.2	36	95	0	140	54	5	18	21	1.63
45595288--45595332	5	8.8	5	80	4	54	71	0	26	2	0.98
45595297--45595348	20	2.6	21	82	8	56	71	0	23	5	1.07
45595357--45595395	8	4.6	8	81	12	51	71	0	28	0	0.86
45595338--45595376	20	2.0	20	84	0	51	69	0	25	5	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45595358--45595395	9	4.3	9	83	3	51	73	0	26	0	0.83
45595423--45595450	3	9.3	3	100	0	56	67	32	0	0	0.91
45600234--45600341	54	2.0	54	100	0	216	40	16	20	22	1.91
45617845--45618020	31	5.7	31	89	0	246	30	5	15	48	1.68
45617849--45618020	93	1.9	92	90	1	272	30	5	15	48	1.69
45618142--45618260	43	2.8	42	81	6	143	26	17	27	27	1.98
45621424--45621471	19	2.6	18	83	6	51	31	22	25	20	1.98
45621444--45621480	19	1.9	19	88	0	56	29	24	21	24	1.99
45621961--45621994	11	3.0	11	91	4	50	55	0	0	44	0.99
45630613--45630698	42	2.0	42	95	0	154	37	15	10	37	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141