genome.fa.s1.2.7.7.80.10.50.1000.30.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  30  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9949634--9949825	74	2.5	75	87	2	260	36	5	11	45	1.65
9950132--9950195	31	2.1	31	91	2	103	25	3	14	57	1.51
9952306--9952351	20	2.3	20	85	7	58	39	17	13	30	1.87
9956928--9957080	72	2.1	72	92	0	252	37	18	13	30	1.89
9958494--9958525	13	2.6	13	90	9	50	40	12	9	37	1.75
9959435--9959595	33	4.7	33	75	21	129	21	21	27	29	1.98
9966287--9966416	39	3.3	39	87	0	188	35	19	11	33	1.88
9969587--9969657	31	2.3	31	80	0	79	29	14	12	43	1.82
9979635--9980934	652	2.0	652	94	0	2271	30	19	20	29	1.97
9989683--9989757	23	3.3	23	80	14	93	53	21	8	17	1.69
9989856--9989890	18	1.9	18	100	0	70	60	22	5	11	1.52
9993173--9993216	21	2.1	21	100	0	88	43	13	9	34	1.76
10005409--10005505	28	3.4	28	77	6	106	48	15	17	18	1.81
10023777--10023819	23	1.9	23	90	4	70	44	0	0	55	0.99
10023775--10023827	23	2.3	23	77	6	63	52	0	0	47	1.00
10029424--10029490	19	3.6	19	79	15	68	4	22	2	70	1.19
10032988--10033282	113	2.6	114	81	4	321	35	17	21	25	1.95
10033194--10033350	75	2.1	75	82	4	183	35	15	21	27	1.94
10033099--10033470	188	2.0	187	82	5	448	34	16	21	26	1.95
10033307--10033760	114	4.0	114	75	11	419	32	17	22	27	1.97
10033304--10033732	229	1.9	227	84	6	580	32	17	22	28	1.96
10033331--10033795	229	2.0	227	81	6	539	32	17	21	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10044015--10044071	21	2.7	21	91	0	87	36	21	38	3	1.70
10044057--10044095	12	3.2	12	88	0	60	41	15	38	5	1.69
10044523--10044663	42	3.3	42	81	7	144	28	24	20	26	1.99
10044775--10044817	16	2.7	16	88	0	59	25	25	2	46	1.65
10049284--10049314	13	2.4	13	94	0	53	51	0	0	48	1.00
10050431--10050491	19	3.1	19	77	13	61	40	9	11	37	1.75
10052151--10052376	43	5.3	42	81	4	224	22	15	28	33	1.95
10052138--10052376	86	2.8	85	83	1	275	23	14	28	33	1.94
10052445--10052512	31	2.2	31	100	0	136	14	29	23	32	1.94
10061010--10061069	30	2.0	30	83	3	75	41	0	38	20	1.52
10061364--10061412	9	5.4	9	90	0	80	38	22	12	26	1.89
10061364--10061414	18	2.8	18	100	0	102	37	21	11	29	1.89
10067976--10068027	28	1.9	26	84	7	68	44	19	3	32	1.69
10068160--10068337	90	2.0	90	97	0	338	35	20	19	24	1.95
10068643--10068802	43	3.7	44	77	12	170	31	27	17	23	1.97
10076535--10076692	43	3.7	41	80	9	129	34	27	14	24	1.94
10077772--10077796	13	1.9	13	100	0	50	40	24	4	32	1.73
10077957--10078000	22	2.0	22	100	0	88	68	9	9	13	1.40
10077971--10078061	25	3.4	27	77	9	87	64	9	8	16	1.47
10077991--10078061	29	2.6	27	82	8	83	64	9	8	16	1.47
10080472--10080756	101	2.8	101	89	1	401	26	17	25	30	1.97
10080472--10080758	51	5.7	51	76	4	226	26	17	26	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10086700--10086946	43	5.8	43	77	5	259	35	24	15	24	1.94
10086656--10086965	85	3.7	85	90	0	460	34	23	17	24	1.96
10087315--10087371	30	1.9	30	85	0	78	29	22	8	38	1.85
10094021--10095061	526	2.0	524	90	3	1655	35	14	16	33	1.89
10099788--10099979	96	2.0	96	90	0	303	39	8	12	39	1.74
10103472--10103529	13	4.5	13	76	8	55	36	10	15	37	1.82
10103574--10103624	16	3.2	16	86	5	68	41	0	25	33	1.56
10103606--10103698	44	2.1	45	84	11	120	31	4	26	37	1.76
10110081--10110110	3	10.0	3	100	0	60	33	33	0	33	1.58
10114921--10114959	20	2.0	20	85	10	53	51	12	10	25	1.71
10116609--10116647	7	5.6	7	84	0	51	33	2	15	48	1.58
10116609--10116647	14	2.8	14	92	0	60	33	2	15	48	1.58
10117721--10117764	22	2.0	22	86	0	61	36	11	15	36	1.84
10118871--10118910	3	14.0	3	84	10	57	67	0	32	0	0.91
10126218--10126268	19	2.6	20	81	12	70	56	5	0	37	1.23
10126249--10126296	24	2.0	24	84	8	62	45	2	0	52	1.12
10132622--10132680	26	2.2	27	79	11	68	57	15	5	22	1.57
10133656--10133761	39	2.6	41	82	4	108	23	27	24	24	2.00
10135097--10135121	2	12.5	2	100	0	50	52	0	0	48	1.00
10142736--10142933	99	2.0	99	97	0	378	41	4	7	45	1.53
10171849--10172152	157	1.9	157	90	0	482	38	9	20	31	1.84
10173343--10173429	23	3.9	23	84	4	115	19	24	24	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10173400--10173499	23	4.4	23	84	2	132	17	25	23	35	1.95
10181582--10181616	3	11.7	3	100	0	70	68	31	0	0	0.90
10181615--10181650	3	12.0	3	100	0	72	66	0	0	33	0.92
10182234--10182277	22	2.0	22	86	4	61	38	18	6	36	1.77
10185726--10185794	16	4.2	16	96	3	129	24	0	37	37	1.56
10185726--10185794	33	2.1	32	97	2	129	24	0	37	37	1.56
10185775--10185865	45	2.0	45	85	2	121	27	6	28	37	1.82
10192149--10192188	20	2.0	20	85	0	53	27	15	12	45	1.82
10194683--10194727	23	2.0	23	100	0	90	35	22	22	20	1.96
10214990--10215042	27	2.0	26	85	10	72	9	9	13	67	1.41
10217719--10217761	20	2.2	20	86	0	59	39	9	9	41	1.69
10220829--10220874	21	2.4	19	75	25	51	47	4	0	47	1.21
10224217--10224248	12	2.6	13	85	14	50	21	12	9	56	1.64
10229297--10229381	27	3.1	27	80	8	84	38	12	16	31	1.87
10248840--10248919	20	4.2	19	74	13	60	60	1	8	30	1.35
10248858--10248907	21	2.4	20	78	18	57	58	0	8	34	1.28
10248840--10248954	18	6.2	18	68	17	67	59	0	10	29	1.37
10252910--10253026	59	2.0	59	100	0	234	49	22	5	22	1.71
10255773--10255815	13	3.5	13	78	18	56	48	11	0	39	1.40
10255773--10255824	23	2.3	23	93	0	86	50	11	0	38	1.39
10257332--10257379	25	1.9	25	82	0	60	62	6	6	25	1.42
10257405--10257434	14	2.1	14	93	0	51	70	20	3	6	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10257663--10257699	9	4.1	9	92	0	65	45	13	10	29	1.77
10257906--10257964	30	2.0	30	83	6	75	20	37	0	42	1.52
10258035--10258081	20	2.3	20	82	7	60	21	34	0	44	1.52
10260025--10260055	2	16.0	2	93	6	55	48	0	0	51	1.00
10260688--10260765	38	2.1	38	87	0	111	26	5	12	55	1.58
10268144--10268215	33	2.2	33	85	5	92	16	20	27	34	1.95
10268404--10268490	33	2.6	33	80	7	88	22	17	25	34	1.96
10268796--10268867	33	2.2	33	85	5	92	19	22	23	34	1.96
10273169--10273483	174	1.8	174	81	6	397	28	35	10	25	1.89
10275872--10275896	7	3.6	7	100	0	50	88	0	12	0	0.53
10277839--10277871	6	5.5	6	86	13	50	84	0	15	0	0.61
10277839--10277876	16	2.2	16	90	9	58	84	0	15	0	0.63
10282111--10282398	114	2.5	114	79	7	307	38	17	14	29	1.89
10283332--10283369	12	3.2	12	88	7	60	42	15	26	15	1.87
10283332--10283366	11	3.1	11	91	4	52	42	17	22	17	1.88
10286892--10286930	18	2.1	19	85	4	53	56	7	0	35	1.28
10289413--10289463	18	2.6	20	76	20	54	19	35	0	45	1.51
10290418--10290550	70	1.9	67	83	4	167	32	10	13	43	1.78
10298952--10299016	27	2.3	28	81	10	78	52	10	7	29	1.64
10298967--10299027	27	2.3	27	88	0	86	45	9	11	32	1.73
10299009--10299246	80	3.0	80	79	5	241	44	12	12	30	1.78
10299035--10299320	78	3.7	78	82	7	305	43	11	12	32	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10301900--10302149	121	2.1	121	96	0	464	32	8	24	34	1.86
10301926--10302185	121	2.2	120	88	4	371	35	8	23	32	1.86
10314052--10314142	42	2.2	42	87	0	137	24	26	30	18	1.98
10318843--10318910	35	1.9	36	84	3	93	36	17	11	33	1.86
10318834--10318910	35	2.2	35	80	2	91	36	16	11	35	1.86
10322197--10322229	5	6.6	5	100	0	66	81	0	0	18	0.68
10322312--10322346	5	7.0	5	100	0	70	80	0	0	20	0.72
10322197--10322430	117	2.0	117	100	0	468	56	17	5	19	1.62
10322668--10322692	10	2.5	10	100	0	50	76	0	24	0	0.80
10323481--10323530	9	5.6	9	77	13	50	32	2	4	62	1.25

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141