genome.fa.s1.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr13
Parameters: 2 7 7 80 10 50 1000
Length:  46006518

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  37  of  141  ( 16825 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12350490--12351344	432	2.0	430	94	0	1505	36	7	14	40	1.75
12353769--12353938	19	8.8	19	86	2	241	37	9	16	37	1.81
12353769--12353961	38	4.9	38	90	5	260	36	8	16	37	1.80
12353769--12353945	59	3.1	57	84	4	241	37	9	16	36	1.81
12353769--12353938	78	2.2	76	92	2	277	37	9	16	37	1.81
12353769--12353966	19	10.0	21	77	17	153	36	8	16	37	1.80
12354196--12354234	19	2.1	19	100	0	78	15	20	5	58	1.55
12361032--12361112	9	9.7	9	88	8	102	88	8	0	2	0.59
12361033--12361104	8	8.9	8	83	13	94	88	9	0	1	0.56
12361032--12361112	1	81.0	1	77	0	81	88	8	0	2	0.59
12362382--12362620	132	1.8	132	95	1	435	30	20	25	22	1.98
12362688--12363099	132	3.2	132	88	4	658	29	18	24	28	1.98
12363099--12363566	44	10.8	42	74	11	317	28	20	23	27	1.99
12363190--12363474	128	2.2	128	94	0	489	29	21	20	28	1.98
12363729--12363789	19	3.2	19	85	0	95	37	8	16	37	1.78
12363730--12363816	22	4.2	21	73	20	85	37	6	17	37	1.76
12366923--12366976	16	3.4	16	94	0	90	31	0	35	33	1.58
12366955--12367045	45	2.0	44	85	2	119	31	5	27	35	1.80
12366958--12367064	44	2.6	40	73	16	117	34	5	28	31	1.80
12372146--12372207	22	2.9	21	85	7	79	29	0	4	66	1.12
12372180--12372220	3	14.0	3	80	14	50	34	0	2	63	1.08
12372152--12372232	8	10.1	8	70	23	55	32	2	3	61	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12374068--12374102	16	2.2	16	89	0	52	22	14	20	42	1.88
12374557--12374603	19	2.5	19	82	6	60	27	19	10	42	1.84
12376838--12376885	7	6.7	7	80	19	55	85	14	0	0	0.60
12376838--12376885	14	3.4	14	88	11	71	85	14	0	0	0.60
12378611--12378925	44	7.2	43	61	12	111	25	17	26	30	1.97
12378606--12379132	88	6.0	88	91	0	813	26	18	26	28	1.98
12379292--12379492	100	2.0	99	85	0	267	31	21	21	25	1.98
12380951--12381005	3	18.0	3	78	17	60	32	1	3	61	1.24
12380923--12381005	22	3.7	22	77	14	71	30	2	6	61	1.33
12380951--12381004	14	3.8	14	87	7	65	33	1	3	61	1.25
12380945--12381006	14	4.1	15	78	19	60	33	1	3	61	1.22
12381153--12381203	25	2.0	26	81	11	61	29	7	5	56	1.51
12382995--12383036	19	2.3	18	83	4	57	40	2	0	57	1.12
12383071--12383289	96	2.3	94	80	10	230	33	8	17	40	1.80
12384692--12384869	85	2.1	86	91	3	288	26	27	24	21	1.99
12384692--12384869	43	4.2	43	86	2	252	26	27	24	21	1.99
12389798--12389851	7	7.7	7	85	0	72	44	50	0	5	1.25
12389791--12389851	21	2.9	21	90	0	95	44	47	0	8	1.33
12389940--12389966	7	3.9	7	100	0	54	29	55	0	14	1.40
12389916--12390112	88	2.2	89	90	4	310	41	31	2	24	1.66
12389841--12390110	103	2.8	103	84	11	311	43	28	1	26	1.64
12390199--12390230	14	2.2	15	94	5	57	37	31	0	31	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12390615--12390929	41	7.7	41	86	3	386	29	27	22	20	1.99
12390987--12391062	39	1.9	39	84	5	100	27	22	19	30	1.98
12393055--12393113	23	2.6	23	100	0	118	62	18	3	15	1.45
12393989--12394463	216	2.2	216	90	2	733	26	24	19	29	1.98
12394562--12394768	87	2.4	88	85	1	281	28	25	17	28	1.98
12394561--12394772	44	4.8	45	81	4	245	28	25	17	28	1.98
12400081--12400127	23	2.0	24	87	4	69	38	17	6	38	1.75
12400104--12400178	19	3.8	19	92	3	123	37	16	10	36	1.83
12402743--12402778	13	2.8	13	82	0	54	33	38	11	16	1.84
12404098--12404157	25	2.3	26	80	2	68	50	0	10	40	1.36
12404143--12404193	13	3.8	13	86	2	66	60	3	0	35	1.15
12405068--12405098	13	2.3	14	94	5	55	77	9	12	0	0.99
12405067--12405111	21	2.2	20	84	4	54	80	11	8	0	0.92
12407095--12407146	25	2.0	25	85	10	70	28	5	3	61	1.37
12408461--12408491	16	1.9	16	93	0	53	80	6	3	9	0.99
12409443--12409482	13	3.3	13	76	20	50	85	0	10	5	0.75
12409554--12409637	42	2.0	42	84	9	109	27	15	32	25	1.95
12410777--12411124	45	7.8	45	88	0	527	27	16	25	30	1.97
12411134--12411749	132	4.7	132	87	1	868	30	20	24	24	1.99
12411841--12411958	44	2.7	44	73	6	114	27	17	22	32	1.97
12411930--12412037	45	2.4	45	76	3	110	25	18	28	27	1.98
12412512--12412545	16	2.1	16	89	10	52	14	2	0	82	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12413555--12413588	3	11.3	3	87	0	50	32	2	2	61	1.26
12416094--12416393	24	12.8	24	68	14	144	54	4	6	34	1.48
12416171--12416376	70	3.0	69	75	7	191	54	5	6	33	1.48
12417148--12417211	21	3.1	21	77	6	78	14	26	4	54	1.59
12417149--12417211	19	3.2	19	77	6	63	14	26	4	53	1.60
12417149--12417220	21	3.7	20	77	7	76	12	29	4	54	1.56
12418562--12418600	18	2.2	18	85	0	51	61	5	0	33	1.18
12420272--12420442	86	2.0	86	88	2	254	25	25	26	22	2.00
12422259--12422359	27	3.7	26	83	7	121	39	23	16	19	1.92
12422270--12422377	54	2.0	54	87	0	153	39	20	19	20	1.92
12424846--12424896	21	2.4	21	93	0	84	37	7	3	50	1.50
12424870--12424923	27	1.9	29	85	7	76	46	12	1	38	1.53
12424857--12424906	21	2.3	21	86	3	64	42	8	2	48	1.44
12429430--12429482	27	2.1	26	86	10	74	35	5	18	39	1.75
12436822--12436858	16	2.2	17	90	4	58	51	0	8	40	1.32
12437026--12437068	3	14.0	3	80	4	50	62	2	4	30	1.28
12447071--12447873	17	44.7	17	69	14	357	47	10	12	30	1.74
12447154--12447190	19	1.9	19	94	0	65	56	13	5	24	1.58
12447170--12447797	35	17.6	36	72	13	272	47	10	12	29	1.74
12447314--12447724	53	7.7	52	74	11	228	49	10	11	27	1.73
12447076--12447869	18	44.2	17	69	18	320	46	10	12	30	1.75
12449182--12449276	10	10.0	9	76	12	75	1	17	0	81	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12449184--12449280	22	4.4	21	82	7	106	1	18	0	80	0.77
12449182--12449280	12	9.2	11	78	14	109	1	19	0	79	0.78
12449555--12449617	6	10.3	6	91	3	72	0	23	0	76	0.79
12449545--12449585	12	3.6	12	90	6	59	0	19	0	80	0.71
12449544--12449617	22	3.5	21	80	8	69	0	22	0	77	0.78
12449555--12449605	19	2.7	19	87	3	68	0	21	0	78	0.75
12449545--12449620	34	2.2	34	81	4	91	0	25	0	75	0.81
12449564--12449618	3	19.0	3	84	3	69	0	25	0	74	0.82
12450068--12450193	29	4.2	28	81	9	144	40	3	19	37	1.67
12450068--12450193	59	2.1	59	86	4	173	40	3	19	37	1.67
12450386--12451043	76	8.7	76	96	0	1140	36	22	15	26	1.93
12450978--12451104	59	2.1	60	97	2	238	29	23	16	30	1.96
12451992--12452056	6	11.3	6	87	9	100	0	0	15	84	0.62
12451971--12452056	34	2.5	34	88	5	120	0	3	12	83	0.76
12462851--12463544	18	39.0	18	70	14	234	47	10	11	29	1.73
12462857--12463544	35	19.3	35	70	15	267	48	10	11	29	1.73
12463046--12463123	37	2.2	38	84	9	101	42	12	8	35	1.75
12463091--12463498	53	7.7	51	72	15	206	50	11	11	27	1.72
12463208--12463498	52	5.5	51	76	11	239	50	10	10	28	1.70
12462812--12463543	17	41.2	18	71	13	441	47	10	11	30	1.73
12463937--12464010	13	5.7	14	74	20	63	0	22	1	75	0.88
12463935--12464006	12	5.7	13	75	19	64	0	22	1	76	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12463931--12464010	23	3.5	23	83	11	94	0	21	1	77	0.84
12463930--12464009	36	2.2	36	85	12	103	0	21	1	77	0.84
12464275--12464338	6	10.3	6	86	8	67	0	20	0	79	0.73
12464284--12464338	26	2.1	26	89	3	83	0	20	0	80	0.72
12464300--12464342	10	4.0	11	82	14	54	0	23	0	76	0.78
12464701--12464845	30	4.9	28	77	9	130	39	3	20	36	1.70
12469156--12469229	13	5.7	14	74	20	63	0	22	1	75	0.88
12469154--12469225	12	5.7	13	75	19	64	0	22	1	76	0.86
12469150--12469229	23	3.5	23	83	11	94	0	21	1	77	0.84
12469149--12469228	36	2.2	36	85	12	103	0	21	1	77	0.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141